#NEXUS [written Mon Mar 27 15:32:11 SGT 2017 by Mesquite version 3.11 (build 766) at MesemiteAir.local/10.0.1.13] BEGIN TAXA; DIMENSIONS NTAX=23; TAXLABELS Chaunostoma Lepechinia_calycina_BTD20 Lepechinia_bullata_BTD223 Lepechinia_salviae_RSJ Lepechinia_hastata_BTD44 Dorystaechas_hastata Hedeoma_piperitum Melissa_officinalis Perovskia Rosmarinus Salvia_aristata Salvia_axillaris Salvia_californica Salvia_carduacea Salvia_glutinosa Salvia_greatae Salvia_officinalis Salvia_patens Salvia_przewalskii Salvia_roemeriana Salvia_sclarea Salvia_similis Zhumeria_majdae ; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=1624; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Chaunostoma CCATTTACCAACCTAGAGGAATCTACACCAACGCTAAGGTGAGAA--------GAGAGAATCGATGA-TTTGTGCCCATGCATCCT----------------CCTGATTTT-TCAAT-CCTCAC--TTTG----TGCTTTATTGCTAC--------------TAGGTTTCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCATTCTCAGACTTCTATCAGCTCAATCTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGTATGAGTCATACAATATT-----------CTCTGTTG--------------------TTAGATACTGTTACAGATTAAG---TTATATCCTTACTGA-TGCAGGTATGAAAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCGCACAGAGTTGTAACTGTGAGCCCCTACTATGCCGAGGAACTTGTTTCTGGCCCTGATAAAGGAGTTGAGTTGGATAACATCCTCCGTAGCATTAGGTGTTCCGTCTCTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCATTGACTGATAAATACATCGATTATCACTATGATATCACCACTGT----AAGCA----TTGAA----AT-AT----CAT--------GAGAAGGATTCTAAGTC----TTG----CTTATTGAAGTGTACAA----TGTGG--------------------T--------TCTAATT----GAGAATCC-----------ACGTTTCAGGTCATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCAGCAGTGGGGTTGCCTGTTGATAGGAGCATTCCTCTCATTGGATTTATCGGCAGACTTGAAGAACAAAAAGGATCAGATATCCTTGTTGCCGCACTTGATAAATTTATTGGGATGAATGTTCAAGTAGTCATCCTTGTAAGTAGT--------------------TCA--GCAT--------TATCGTT-TAT---CTTGTT-AAAATCGAAC-AC--TGTA----TT---AAGA-CGA-----------GTTTGTTG----TATCAGGGAACCGGGAAGAAGAAGTTCGAGAAGCAGATTGAGCAACTTGAGGAGTTGTACCCTGATAAAGCTAGAGGAGTGGCCAAATTCAATGTGCCCTTGGCCCATATCATAACTGCTGGTGCTGATTTTATGTTGGTTCCTAGTAGATTTGAACCTTGTGGTCTGATCCAGTTACATGCCATGCGATATGGAACCGTAAGA---TTCCTA--------------------------TTTATTTA----------TATTTCATTTAAT-----TTAGATG----------------------------------AGAGT--------------------ATAATAAATATGATTGGTGG-------------------------------------------------------------------------------------------------------------------------------------------ATCAGATACCTATCTGTGCTTCAACA Lepechinia_calycina_BTD20 --ATTTACCAACCTAGAGGAATCTACACCAACGCTAAGGTGAGAA--------GAGAGAATCGATGA-TTTGTGCCCATGCATCTT----------------CCTGATTTT-TCAAT-CCTCAC--TTTT----TGCTTTATTGCTAC--------------TAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCATTCTCAGACTTCTATCAGCTCAACCTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGTATGAGTCATACAATATT-----------CTCTGTTG--------------------TTAGATACTGTTACAGATTAAG---TTATATCCTTACTGA-TGCAGGTATGAAAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCGGGGATTATAGAATCGCAGAGAGTTGTAACTGTGAGCCCCTACTATGCCGAGGAACTTGTGTCTGGCCCTGATAAAGGAGTTGAGTTGGATAACATCCTCCGTAGCATTAGGTGTTCCGTCTCTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCATTGACTGATAAATACATCGATTATCACTATGATATCACCACTGT----AAGCA----TTGAA----AT-AT----CAT--------GAGAAGGATTCTAAGTC----TTG----CTTATTGAAGTGT------------------------------------------TCTAATT----GAGAATCC-----------ACGTTTCAGGTGATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCGGCAGTGGGCTTGCCTGTTGATAGGAGCATTCCCCTCATTGGATTTATCGGCAGACTTGAAGAACAAAAAGGATCAGATATCCTTGTTGCCGCACTTGATAAATTTATTGGGATGAATGTTCAAGTAGTCATCCTTGTGAGTAGT--------------------TCA--GCAT--------TATCGTT-TAT---CTTGTC-AAAATCAAAC-AC--TGTA----TT---AAGA-TGA-----------GTTTGTTG----TATCAGGGAACCGGGAAGAAGAAGTTCGAGAAGCAGATTGAGCAACTTGAGGAGTTGTACCCTGATAAAGCTAGAGGAGTTGCCAAATTCAATGTGCCCTTGGCCCATATCATAACTGCTGGTGCTGATTTTATGTTGGTTCCTAGTAGATTTGAGCCTTGTGGTCTGATCCAGTTACATGCCATGCGATATGGAACCGTAAGA---TTCCTA--------------------------TTTATTTA----------TATTTCATTTAAT-----TTAGATG----------------------------------AGAGT--------------------ATAATAAATATGATTGGGGG-------------------------------------------------------------------------------------------------------------------------------------------ATCAGATACCTATC------------ Lepechinia_bullata_BTD223 --ATTTACCAACCTAGAGGAATCTACACCAACGCTAAGGTGAGAA--------GAGAGAATCGATGA-TTTGTGCTCATGCATCTT----------------CCTGATTTT-TCAAT-CCTCAC--TTTT----TGCTTTATTGCTAC--------------TAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGTAGATTCGCATTCTCAGACTTCTATCAGCTCAATCTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGTATGAGTCATACAATATT-----------CTCTGTTG--------------------TTAGATACTGTTACAGATTAAG---TTATATCCTTACTGA-TGCAGGTATGAAAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCGCACAGAGTTGTAACTGTGAGCCCCTACTATGCTGATGAACTTGTTTCTGGCCCTGATAAAGGAGTTGAGTTGGATAACATCCTCCGTAGCATTAGGTGTTCCGTCTCTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCATTGACTGATAAATACATCGATTATCACTATGATATCACCACTGT----AAGCA----TTGAA----GT-AT----CAT--------GAGAAGGATTCTAAGTC----TTG----CTTATTGAAGTGT------------------------------------------TCTAATT----GAGAATCC-----------ACGTTTCAGGTCATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCAGCAGTGGGCTTGCCTGTTGATAGGAGCATTCCTCTCATTGGATTTATCGGTAGACTTGAAGAACAAAAAGGATCAGATATCCTTGTTGCCGCACTTGATAAATTTATTGGGATGAATGTTCAAGTAGTCATCCTTGTAAGTAGT--------------------TGA--GCAT--------TA-CGTT-TAT---CTTGTC-AAAATCGAAC-AC--TGTA----TT---AAGA-CGA-----------TTTTGTTG----TATCAGGGAACCGGGAAGAAGAAGTTCGAGAAGCAGATTGAGCAACTTGAGGAGTTGTACCCTGATAAAGCTAGAGGAGTGGCCAAATTCAATGTGCCCTTGGCCCATATCATAACTGCTGGTGCTGATTTTATGTTGGTTCCTAGTAGATTTGAACCTTGTGGTCTGATCCAGTTACATGCCATGCGATATGGAACCGTAAGA---TTCCTA--------------------------TTTATTTA----------TATTTCATTTAAT-----TTAGATG----------------------------------AGAGT--------------------ATAATAAATATGATTGGTGG-------------------------------------------------------------------------------------------------------------------------------------------ATCAGATACCTATC------------ Lepechinia_salviae_RSJ --ATTTACCAACCTAGAGGAATCTACACCAACGCTAAGGTGAGAA--------GAGAGAATCGATGA-TTTGTGCCCATGCATCTT----------------CCTGATTTT-TCAAT-CCTCAC--TTTT----TGCTTTATTGCTAC--------------TAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGTAGATTCGCATTCTCAGACTTCTATCAGCTCAATCTACCTGATCAACTCAAGAGCTCTTTTGAGTTCATTGATGGGTATGAGTCATACAATATT-----------CTCTGTTG--------------------TTAGATACTGTTACAGATTAAG---TTATATCCTTACTGA-TGCAGGTATGAAAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCGCACAGAGTTGTAACTGTGAGCCCCTACTATGCTGAGGAACTTGTTTCTGGCCCTGATAAAGGAGTTGAGTTGGATAACATCCTCCGTAGCATTAGGTGTTCCATCTCTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCATTGACTGATAAATACATCGATTATCACTATGATATCACCACTGT----AAGCA----TTGAA----AT-AT----CAT--------GAGAAGGATTCTAAGTC----TTG----CTTATTGAAGTGT------------------------------------------TCTAATT----GAGAATCC-----------ACGTTTCAGGTCATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCAACAGTGGGCTTGCCTGTTGATAGGAGCATTCCTCTCATTGGATTTATCGGTAGACTTGAAGAACAAAAAGGATCAGATATCCTTGTTGCCGCACTTGATAAATTTATTGGGATGAATGTTCAAGTAGTCATCCTTGTAAGTAGT--------------------TGA--GCAT--------TATCTTT-TAT---CTTGTC-AAAATCGAAC-AC--TGTA----TT---AAGA-CGA-----------TTTTGTTG----TATCAGGGAACCGGGAAGAAGAAGTTCGAGAAGCAGATTGAGCAACTTGAGGAGTTGTACCCTGATAAAGCTAGAGGAGTGGCCAAATTCAATGTGCCCTTGGCCCATATCATAACTGCTGGTGCTGATTTTATGTTGGTTCCTAGTAGATTTGAACCTTGTGGTCTGATCCAGTTACATGCCATGCGATATGGAACCGTAAGA---TTCCTA--------------------------TTTATTTA----------TATTTCATTTAAT-----TTAGATG----------------------------------AGAGT--------------------ATAATAAATATGATTGGTGG-------------------------------------------------------------------------------------------------------------------------------------------ATCAGATACCTATC------------ Lepechinia_hastata_BTD44 CCATTTACCAACCTAGAGGAATCTACACCAACGCTAAGGTGAGAA--------GAGAAAATCGATGA-TTTGTGCCCATGCATCTT----------------CCTGATTTT-TCAAT-CCTCAC--TTTT----TGCTTTATTGCTAC--------------TAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCRTTCTCAGACTTCTATCAGCTCAATCTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGTATGAGTCATACAATATT-----------CTCTGTTG--------------------TTWGATACTGTTACAGATTAAG---TTATATCCTTACTGA-TGCAGGTATGAAAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCGCACAGAGTTGTAACTGTGAGCCCCTACTATGCCGAGGAACTTGTTTCTGGCCCTGATAAAGGAGTTGAGTTGGATAACATCCTCCGTAGCATTAGGTGTTCCGTCTCTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCATTGACTGATAAATACATCGATTATCACTATGATATCACCACTGT----AAGCA----TTGGA----AT-AT----CAT--------GAGAAGGATTCTAAGTC----TTG----CTTATTGAAGTGT------------------------------------------TCTAATT----GAGAATCT-----------GCGTTTCAGGTCATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCAGCAGTGGGCTTGCCTGTTGATAGGAGCATTCCTCTCATTGGATTTATCGGCAGACTTGAAGAACAAAAAGGATCAGATATCCTTGTTGCCGCACTTGATAAATTTATTGGGATGAATGTTCAAGTAGTCATCCTTGTAAGTAGT--------------------TGA--GCAT--------TATCGTT-TAT---CTTGCC-AAAATCGAAC-AC--TGTA----TT---AAGA-TGA-----------TTTTGTTG----TATAAGGGAACCGGGAAGAAGAAGTTCGAGAAGCAGATTGAGCAACTTGAGGAGTTGTACCCTGATAGAGCTAGAGGAGTGGCCAAATTCAATGTGCCCTTGGCCCATATCATAACTGCTGGTGCTGATTTTATGTTGGTTCCTAGTAGATTTGAACCTTGTGGTCTGATCCAGTTACATGCCATGCGATATGGAACCGTAAGA---TTCCTA--------------------------TTTATTTA----------TATTTCATTTAAT-----TTAGATG----------------------------------AGAGT--------------------ATAATAAATATGATTGGTGG-------------------------------------------------------------------------------------------------------------------------------------------ATCAGATACCTATCTGTGCTTCAACA Dorystaechas_hastata -----------------------------------------------AAGCTGGAGAGAATCGATGA-TTTGTT----------------------------TCTGATTTT-TTGAT-CTTCAC--TTTT----TGCCTTACTGCTAC------CATA--TATAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCGTTCTCAGACTTCTRCCAGCTCAATCTACCTGATCAACTCAAGAGCTCCTTTGAATTCATTGATGGGT--------------------------------------------------------------------------------------------------------ATGAGAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCAGACAGAGTTGTAACTGTGAGCCCCTATTATGCCAAGGAACTTGTTTCTGGTCCCGATAAAGGAGTTGAATTGGACAACATCCTCCGTAGCATCAATTGTTCTGTCTCTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCATTGACTGATAAATWCATCGATTATCACTTTGATATCACCACCGT----AAGGA-TTATTAAAATA-ATCAT----CATCGT-----------------AACTC----TTG----CTCACTGAAGAGTAGAATTAATGTGG--------------------TTTG-GTT-CCTTATT-------------------------GTTTCAGGTTATGGATGCTAAGCCATTGCTGAAAGAAGCTCTTCAAGCATCAGTGGGCTTGCCTGTTGATAGGAACATTCCTCTCATTGGATTTATTGGCAGACTTGAAGAACARAAGGGATCAGATATCCTTGTCGCTGCACTCGATAAATTTATTGGGATGGATGTTCAAGTAGTCATCCTTGTAAGTACTC-------------------TGG--GCAA--------TATTGTG-TAT---CTTGTC-AAAATCGAAC-AC--TGTA-AAATG---ATGA-CGA---TGAC------TTATTG----CATCAGGGAACTGGGAAGAAGAAGTTCGAGAAGGAGATTGAGAAACTTGAGGAGATGTACCCTGATAAAGCTAGAGGAGTGGCCAAATTCAATGTGCCCTTGGCCCATACCATAACTGCTGGTGCTGATTATATGTTGGTTCCTAGCAGATTTGAACCTTGTGGTCTCATTCAGTTACATGCCATGCGATATGGAACCGTAAGAAGATCCATG----------------------------MGTCTCTATCT--TTATATTTCATTTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Hedeoma_piperitum -------CCAACCTAAAGGAATCTACACAAACGCTAAGGTGACGA--------GA-AGAATAGATCA-TGTACGATCATGCATATT------------AAGGCCACATGTTAACATTGCCTCTG--TTTT----GGGTTTATCGGTTC------TAT-----TAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCATTCTCGGACTTTTATCAGCTCAATCTACCCGATCAACTCAAGAGCTCTTTTGAGTTCATTGATGGGTATGA-----ACAAATAATGTTGGCTGTTGAGTGTTAATCTAAATAAGTGA--------------TGTT--AGATTGAA---TTATACCCTTACCGCCTGCAGGTATGAAAAGCCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATAATAGAATCAGACAGAGTCGTAACCGTGAGCCCCTACTACGCCAAGGAACTCGTTTCGGGTCCTGATAAAGGAGTTGAGTTGGATAACATCCTCCGTAGCATCAAGTGTTCCATCTCCGGTATCGTAAATGGCATGGATACTCAAGAGTGGAACCCCTTGACAGATAAATACATCGATTATCACTATGATATGTCCACTGTAAGTAAGAATTAATTAAA----AC-AC----CATCTTTATAGGAGTAGGAT-----------------------------------------GTGGTTATGCTACACTAAACGGC-------------------------------------TGCACGTTTCAGGTTATGGATGCTAAGCCATTGTTGAAGGAAGCTCTCCAAGCAGAAGTGGGCTTGCCTGTTGATAGGAGCATTCCTCTCATTGGATTTATAGGCAGACTCGAAGAACAAAAGGGATCGGATATCCTCGTCGCTGCACTTCATAAGTTCGTTGGGATGAATGTTCAAGTAGTCATCCTTGTAAGTAGA-AAATGAATGAATCC-----TGA--GCGT----------TCGTT------------C-AAATTGAGAC-----TGCA----TT---GTGA-CGAGA---------TTTTGTTGTATATATAAGGGAACGGGGAAGAAGAAGTTCGAGAAGCAGATTGAGCAACTTGAAGAGTTGTACCCTGATAAAGCTAGAGGAGTGGCCAAATTCAATGTGCCCATGGCCCATAACATAACTGCTGGTGCTGATTTTATGCTTGTTCCTAGTAGATTTGAACCTTGTGGTCTCATCCAATTACATGCCATGCGATACGGAACCGTAAGA---TCCCTA--------------------------CGTATATAG----------ATTTCATTTTAT-----T------AGGTTCACCATGTGTAAAT---------------------GCTGAATGATAGTG-TATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Melissa_officinalis CCATTTACCAACCTAAAGGAATCTACACCAACGCTAAGGTGATAA--------GAGAGAATTGATGA-TTTGTGCCCATGCATCTTCATGATGGTATGAAGGCCACATTTT-TCAAT-CCTCAC--TTTT----TGGTTTATTGCTTC--------------TAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCATTCTCAGACTTCTATCAGCTCAATCTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGTATGA-----ACAATATT-----------CTCTGTTGATCTAAATATGTGATG----TTGGATGCTGCTACAGATTAGA---TTATATCCTTACTGA-TGCAGATATGAAAAACCAGTCAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCACACAGAGTTGTAACTGTGAGCCCCTACTACGCCAAGGAACTTGTTTCTGGTCCTGATAAAGGAGTTGAGTTGGATAACATCCTCCGTAGCATTAAATGTTCCGTCTCTGGCATCGTAAATGGTATGGATACTCAAGAGTGGAACCCATTGACCGATAAATACCTCGATTATCACTATGATATCACCACTGT----AAGAA----TTGAA----AT-AT----CAA--------GAGAAAGATTTTAA-----------------------TAGTACAA----TGTGGTTACT----------CGGT------GTT-TCTTATT----GA-AATCC-----------ATGTTTCAGGTTATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCAGCAGTCGGCTTGCCTGTTGATAAGAGCATTCCTCTGATTGGATTTATCGGCAGACTTGAAGAGCAAAAAGGATCAGATATCCTTGTGGCCGCACTAGATAAATTTATGGGGATGAATGTTCAAGTAGTCATCCTTGTAAGTAAT-AAATGAACCTCTGCAATCTTGA--GCAT--------CATCATT-TAT---CTTGTC-AAAAT------------TA----TT---ATGA-TGA-----------TTTTTCTG----TATCAGGGAACCGGGAAGAAGAAGTTCGAGAAGCAGATTGAACAACTTGAGGAGTTGTATCCTGATAAAGCTAGAGGAGTGGCCAAATTCAATGTGCCCTTGGCCCATACCATAACTGCTGGTGCTGATTTTATGTTGGTTCCTAGTAGATTTGAACCTTGTGGTCTGATCCAGTTACATGCCATGCGATATGGAACCGTAAGA---TCCCTA---------------------------------------------GTTATATTTCAT-----TTAGATGAGGTTAGTAGTACTAGTACGGTAC-----------------------------------ATAATATGCATGATTGGTGGTTCCTAGTAGATTTGAACCTTGTGGTCTGATCCAGTTACATGCCATGCGATATGGAACCGTAAGATCCCTAGTTATATTTCATTTAGATGAGGTTAGTAGTACTAGTACGGTACATAATATGCATGATTGGTGAATGAAATCAGATACCTATCTGTGCTTCAACA Perovskia CCATTTACCAACCTAGAGGAATCTACACCAACGCTAAGGTGAGAA----GCTAGAGAGAATCGATGA-TTTGTTCCCCTGCA--------------------CCTGATTTT-TCAAT-CCTCAC--TTTT----TGCTTCATTGCTAC------TATA--TATAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTTGCATTCTCAGACTTCTATCAGCTCAACCTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGTATGA-----ACAATATTAA-------TTCCGTGTTGATCTAAATAAGTACTGG-TGTTAGATACTGTTACTGATTAAA---TTATA-----------TGCAGTTATGAGAAACCAGTGAAGGGAAGGAAGATTAACTGGATGAAGGCCGGGATTATAGAATCACACAGAGTTGTAACTGTGAGCCCCTACTACGCCAAGGAACTTATTTCTGGTCCTGATAAAGGAGTTGAGTTGGACAACATCCTTCGTAGCATTAGTTGTTCTGTCTCTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCACTGACTGATAAATACATCGATTATCACTTTGATATCACCACTGT----AAGAA-TAATTGAA----AT-AT----CATCTT-----------------AAGTC----TTG----CTTATTGAAGAGTGCAA----TGTGG--------------------TTT-------CTTATTTCATGAAAATCC-----------ATGCTTCAGGTTATGGATGCTAAGCCGTTGCTGAAGGAAGCTCTTCAAGCATCAGTCGGCTTGCCTGTTGATAGGAGCATTCCGCTCATTGGATTTATCGGCAGACTTGAAGAACAAAAGGGATCAGATATCCTTGTCGCTGCACTTCATAAATTTATTGGGATGGATGTTCAAGTAGTCATCCTTGTAAGTAGTC-------------------TGA--GCAT--------TATTGTT-TGT---CTTGTG-AAAATCGAAC-AC--TGTA----TG---ATGATCGAGGA-------TC-TTGTTG----TATCAGGGAACGGGGAAGAAGAAGTTCGAGAAGGAGATTGAGCAACTTGAGGAGATGTACCCTGATAAAGCTAGAGGAGTGGCCAAATTCAATGTGCCGTTGGCCCATACCATAACTGCTGGTGCTGATTATATGTTGGTTCCTAGTAGATTTGAACCTTGTGGTCTCATCCAGTTACATGCCATGCGATATGGAACCGTAAGA---TCCCTA--------------------------TTTTTATATTTA-------ATTTCATTTCAT-----TTAGATG----------------------------------AGAGTTGGTGAATGATATATATATA----------T-GTTGTTGG-------------------------------------------------------------------------------------------------------------------------------------------ATCAGATACCTATCTGTGCTTCAACA Rosmarinus --ATTTACCAACCTAGAGGAATCTACACGAACGCTAAGGTGAGAA----GCCAGAGAAAATCAATGT-ATTGTGCCCATATATGCC----------------CCTAATTTT-ACAAT-CCTCAT--TTTT--------TTTTTGCTAC------TATA--TATAGGTGGCCTTGKGCATCCCCAACATTGCCTATCAGGGAAGATTCGCATTCTCAGACTTCTATCAGCTCAATCTACCTGATCAACTCAAGAGCTCTTTTGAGTTCATTGATGGGT--------------------------------------------------------------------------------------------------------ATGAGAAACCAGTGAAAGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCGCACAGGGTTGTAACTGTGAGCCCCTATTACGCCAAGGAACTTGTTTCTGGTCCTGATAAAGGAGTTGAGTTGGACAACATCCTCCGTAGCATTACCKGTTCCGTCTCTGGCATCGTAAATGGCAAGGATACTCAAGAGTGGAATCCACTGACAGATAAATACATCGATTATCACTTTGATATTACCACTGT----AAGAA-TAATTGAACCATAT-AT----TATATT-----------------AAGTC----TTG----CTTA----------CAATTAAT------------------------------------TAAT----GAAAATCCYATACATACGTATGTTTTAGGTTATGGATGCCAAGCCATTGCTGAAGGAAGCTCTTCAAGCATCAGTTGGCTTGCCTGTTGATAGGACCATTCCTCTCATTGGATTTATTGGTAGACTTGAAGAACAAAAGGGATCAGATATCCTTGTTGCCGCAATTGATAAATTTATTGGGATGAATGTTCAAGTAGTCATCCTTGTAAGTATTC-------------------TGA--GCATTAA-----TATTGTA-TAT---CTTGTG-AAAATCGAAC-ACACTGTA----TG---ATGATCGG---TGA----TCTTTATTG----CACCAGGGGACGGGGAAGAAGAAATTCGAGAAGGAGATTGAGCAACTCGAGGAGCTGTACCCTGATAAAGCTAGAGGAGTCGCCAAATTCAATGTGCCGTTGGCCCATACGATAACTGCTGGTGCTGATTATATGTTGGTTCCAAGTAGATTCGAACCTTGTGGTCTCATCCAGTTACATGCCATGCGATATGGAACCGTAAGA---TCACGC---RCCCTCCA-------------------------------TATTTTTCATTTC----------GATG----------------------------------AGA------GAATGAAATA----------TCTCTTGTGTTGTTGG-------------------------------------------------------------------------------------------------------------------------------------------ACCAGATACCTATCTGTGCTTCAACA Salvia_aristata ----------ACCTAGAGGAATCTACGCCAATGCAAAGGTGAGAAGGAAGCTAGAGAGAATCGATGA-TTTCTT----------------------------TCTGATTTT-TCAAT-CCTCAC--ATTT----TGCTTCACTGCAACTGAATGTATATCTATAGGTTGCCTTGTGCATCCACAACATTGCCTATCAAGGAAGATTTGCGTTCTCAGACTTCTCTCAGCTGAATCTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGTATGA-----ACAA--TTAATATG-----CTGTGTTGATCTAAATAAGTGGTG----TTAGATAGTGTTACAGATTGAAAATTTATA-----------TGCAGGTATGAGAAACCAGTGAAGGGGAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCAGACAGAGCTGTAACTGTGAGCCCCTACTATGCCAAGGAACTTGTTTCTGGTCCTGATAAAGGAGTTGAGTTGGACAACATCCTCCGTA------CTTGTTCTGTCACTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCAATGACTGATAAACACATCGATTATCACTTTGATATCACCACTGT----AAGGA-TAATTTCA----ATCAT----CATCTT-----------------AGGTC----TTG----CTTATTGAAGATTACAATTAATATTG--------------------TTTG---------------------------------GTACATTTCAGGTCACGGATGCTAAGCCATTGCTGAAGGAAGCTCTCCAAGCGTCAGTTGGCTTACCTGTTGACAGGAACATTCCTCTCATTGGATTTATTGGCAGACTTGAAGAGCAAAAGGGATCAGATATCCTTGTTGCTGCACTTGATAAATTTATTGGGATGGATGTTCAAGTGATCGTCCTTGTAAGTAGTC-------------------TCA--GCAT--------TATTCTT-TAT---CTTGTC-AAAATCAAAAAAC--TGTATGTATGTTTATGA-CGA---TCAC------TTGTGG----CATCAGGGAACGGGGAAGAAGAAGTTCGAGAAAGAGATTGAGAAACTTGAGGAGATGTACCCTGACAAAGCCAGAGGAGTGGCCAAATTCAATGTGCCACTGGCCCATACCATAACTGCTGGTGCTGATTTTATGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Salvia_axillaris CCCTTTACCAACCTAGAGAAATTTACACCAACGCAAAGGTGAGAATGAAGCTGGAGAGAATCAACAA-ACTGTTC---------------------------CCTG-TTTT-TCAAT-CCTCAC--TTTT-----GCTTTTCTGCTTC------TATA--TATAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCRTTCTCAGACTTCTATCAGCTTAATCTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGTT--------------------------------------------------------------------------------------------------------ATGAGAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCAGACAGAGTTGTAACTGTGAGCCCCTATTATGCCGAAGAACTTGTTTCTGGTCCCGATAAAGGAGTTGAGTTGGACAACATCCTCCGTAGCATTAGTGATTCTGTCACTGGTATTGTAAACGGCATGGATACTCAAGAGTGGAACCCAGCAACTGATAAACACATTGATTATCACTTTGATATCACCACTGT----AAGGA-TAGTTGAA----AT-ATT---CATCTC-----------------AAGTCATGCTTG----CTTATTGAATAGTAGAATTAATGTGC--------------------TTTG-GTTGTGTTATT-------------------------GTTTCAGGTTATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCATCAGTGGGCTTGCCTGTTGATAGGAACATTCCTCTCATTGGATTTATTGGGAGACTTGAAGAACAAAAGGGATCAGATATCCTTGTCGCTGCACTCGAGGAATTTATTGGGATGAATGTTCAAGTAGTCATCCTTGTAAGTAGTC-------------------TGACTGTAT---ATTAGTATTGTT-TAT---CTTGTC-AAAGTCGAAG-AC--TGTA----TT---ATGA-CGA---TCAC------T-GTTG----CATCAGGGAACCGGGAAGAAGAAGTTCGAGAAGGAGATTGAGAAACTTGAGGAGCTGTACCCTGATAAAGCTAGAGGAGTGGCCAAATTCAATGTGCCCTTGGCCCATGCCATAACTGCTGGTGCTGATTATATGTTGGTTCCTAGCAGATTCGAACCTTGTGGACTCATCCAGTTACATGCAATGCGATATGGAACCGTAAGAATATCAATG-----CCTTACTATATGTTTTGA-----------------------TTTCATTTCTT-----ATAAATG----------------------------------AATGA-ATTGAATGAAATAT----------CT-----GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Salvia_californica CCCTTTACCAACCTAGAGGAATCTATGCCAACGCTAAGGTGAGAATGAAGCTGGAGAGAATCGACAA-TTTGTT----------------------------CCTGATTTT-TCAAT-CCTCAC--TTTT----TGCTTCTCTGCTCC------TATA--TATAGGTTGCATTGTGCATCCACAACATTACCTATCAGGGAAGATTCGCGTTCTCAGACTTCTATCAGCTCAATTTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGAT--------------------------------------------------------------------------------------------------------ATGAGAAACCAGTGAAGGGGAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCAGACAGAGTTGTAACTGTGAGCCCATATTATGCCAAGGAACTTGTTTCTGGTCCTGATAAAGGAGTTGAATTGGACAACATCCTCCGTAGCATTAATTGTTCTGCCTCTGGCATTGTAAATGGCATGGATACTCAAGAATGGAACCCGTTGACTGATAAATACATCGATTATCACTTTGATAGCACCACTGT----AAGGA-TAATTGAA----AT-ATT---CATCTC-----------------AATTC----TTG----CTTATTGAAGAGAAGAATTAATGTGG--------------------TTTG-GTTACCTTATT-------------------------GTTTCAGGTTATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCATCAGTGGGCTTGCCTGTTGATAGGAACATTCCTCTCATTGGATTTATTGGCAGACTTGAAGAACAAAAGGGATCAGATATCCTTGTCGCTGCACTTGATAAATTTATTGGGATGGATGTTCAAGTAGTCATCCTTGTAAGTAGTC-------------------TGA--GCAT--------TATTGTT--AT---CTTGTC-AAACTTGAAC-AC--TTTA----TT---ATGA-CAA---TCAC------TTGTTG----CATCAGGGAACCGGGAAGAAGAAGTTCGAGAAGGAGATTGAGAAACTTGAGGAGATGTACCCTGATAAAGCTAGAGGAGTGGCCAAATTCAATGTGCCCTTGGCCCATACCATAACTGCTGGTGCTGATTATATGTTGGTTCCTAGCAGATTCGAACCTTGTGGTCTCATCCAGTTACATGCCATGCGATATGGAACCGTAAGAATATCCATA-----CCTCCCTATATGTTTATAT---------------------GTTTCAATTCAT-----CTTGATG----------------------------------AGAGT-GCTGAATGAAATAT----------CT-----GTTGTTGG-------------------------------------------------------------------------------------------------------------------------------------------ATTAGATACCTATCTGTGCTTCAACA Salvia_carduacea CCAATTATCAACCTAGAGGAATCTACACCAACGCTAAGGTGAGAAGGAAGCT-GA-AGAATCGATGA-TTTGTT---------------------------------------CAAT-CCTTAC--TTTT-----GCCTAACTGCTACAGTACGTATATGTATAGGTTGCCTTGTGCATCCACAACATTGCCTATCAAGGAAGATTCGCGTTCTCAGACTTCCACCAGCTCAATCTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGT--------------------------------------------------------------------------------------------------------ATGAGAAGCCAGTGAAGGGAAGGAAGATTAACTGGATGAAGGCCGGGATTATAGAATCAGACAGAGTTGTAACTGTGAGCCCCTACTATGCCAAGGAACTTGTTTCTGGTCCTGATAAGGGGGTTGAGTTGGACAACATCCTCCGCAGCATTGATCGTCCTGTCTCTGGCATTGTGAATGGCATGGATACTCAAGAGTGGAACCCATTGACCGATAAACACATCGATTATCACTTTGACATCACCACTGT----AAGAA-TAACTGAA----AT-TGACAGCATCTT----------------TAAGCC----TTG----TTTCTTGAAGAGTGGAATTAATGTGG-------------------TTTTG-GTT-TTTTACT-------------------------GTTTCAGGTTATGGATGCTAAGCCATTACTGAAGGAAGCTCTTCAAGCCTCAGTGGGCTTGCCTGTTGATAGGAACATTCCTCTCATTGGATTTATTGGGAGACTCGAAGAACAAAAGGGATCGGATATCCTTGTCGCTGCAGTTGAGAGATTTATTGGGATGGATGTTCAAGTAGTCATCCTTGTAAGTAGTC-------------------TGA--GCAC--------TATTGTC-CAT---CTTGTC-AGAATCGAAA-ACCGTATA----ATATAATGA-CAA---TCAC------TTGCTG----CATCAGGGAACCGGGAAGAAGAGGTTTGAGAAGGAGATTGAGAAACTTGAGGAGATGTACCCTGATAAAGCTAGAGGAGTGGCTAA??------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Salvia_glutinosa CCATTTACCAACCTAGAGGAATCTACACCAATGCTAAGGTGAGAATGAAGCTAGAGAGAATCAATGA-TTTGTT----------------------------CCTTATTTT-TCAAT-CCTCGC--TTTTAATATGCTTCACTGCTAC------TATA--TATAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCGTTCTCAGACTTTTATCAGCTCAATCTACCTGATCAACTCAAGAGCTCTTTTGAGTTCATTGATGGGTATGA-----ACAGTACA-----------CTGCGTTGATCTAAATAAGTGGTGTATGTCAGATATTGTTACAGATTAAG---TTATA-----------TGCAGGTATGAGAAACCGGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCAGACAGAGTTGTAACTGTGAGCCCCCACTACGCCAAGGAACTTATTTCTGGTCCTGAAAAAGGAGTTGAGTTGGACAACATCCTCCGTAGCATTCCTTGTTCTGTCTCTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCATTGACTGATAAATACATCGATTATCACTTTGATATCACCACTGT----AAGAA-TAACTGAG----AT-AT----CAT------------------------------------CTTATTCAA------------TGTGG--------------------TTTG-GTT-CTTTATT----GAAAAA--------TGTGTACGTTTCAGGTTATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCATCAGTCGGCTTACCTGTTGATAGGAACATTCCTCTCATTGGATTTATTGGCAGACTTGAAGAACAAAAGGGATCAGATATCCTTGTCGCAGCAATTGATAAATTTATTGGGATGGATGTTCAAGTAGTCATCCTTGTAAGTAGTC-------------------CGA--GCAT--------TATTGTT-TAG---CTTGTC-AAAATCAAAC-AC--TGTA----AT---ACGA-GGA---TC--------TTGTTG----CATCAGGGAACCGGGAAGAAGAAGTTCGAGAAGGAGATTGAGAAACTTGAGGAGATGTACCCTGATAAAGCCAGAGGAGTGGCCAAATTCAATGTGCCCTTGGCCCATACCATAACTGCTGGTGCTGATTATATGTTGGTTCCTAGCAGATTCGAACCTTGTGGTCTCATCCAGTTACATGCCATGCGATATGGAACCGTAAGAAGATCCCTA-----GCTCCA--GATGTTAATA-----------------------TTTCATTTCGT-----TTAGATG----------------------------------AGAGT-GTTGAATGAATGAGATATAT----CT-----GTTGTTGG-------------------------------------------------------------------------------------------------------------------------------------------ATCAGATACCTATCTGTGCTTCAACA Salvia_greatae CCATTTACCAACCTAGAGGAATCTATGCCAACGCTAAGGTGAGAATGAAGCTGGAGAGAATCGACAA-TTTGTT----------------------------CCTGATTTT-TCAAT-CCTCAC--TTTT----TGCCTCTCTGCTAC------TATA--TATAGGTTGCATTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCGTTCTCAGACTTCTATCAGCTCAATTTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGT--------------------------------------------------------------------------------------------------------ATGAGAAACCAGTGAAGGGGAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCAGACAGAGTTGTAACTGTGAGCCCCTATTATGCCAAGGAACTTGTTTCTGGTCCTGATAAAGGAGTTGAATTGGACAACATCCTCCGTAGCATTAATTGTTCCGTCTCTGGCATTGTAAATGGCATGGATACTCAAGAGTGGAACCCATTGACTGATAAATACATCGATTATCACTTTGATATCACCACTGT----AAGGA-TAATTGAA----AT-ATT---CATCTC-----------------AACTC----TTG----CTTATTGAAGAGAAGAATTAATGTGG--------------------CTTG-GTTCCCTTATT-------------------------GTTTCAGGTTATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCATCAGTGGGCTTGCCTGTTGATAGGAGCATTCCTCTCATTGGATTTATTGGCAGACTTGAAGAACAAAAGGGATCAGATATCCTTGTCGCTGCACTTGATAAATTTATTGGGATGGATGTTCAAGTAGTCATCCTTGTAAGTAGTC-------------------TGA--GCAT--------TATTGTT--AT---CTTGTC-AAACTTGAAC-AC--TTTA----TT---ATGA-CAA---TCAC------TTGTTG----CATCAGGGAACCGGGAAGAAGAAGTTCGAGAAGGAGATTGAGAAACTTGAGGAGATGTACCCTGATAAAGCTAGAGGAGTGGCCAAATTCAATGTGCCCTTGGCCCATACCATAACTGCTGGTGCTGATTATATGTTGGTTCCTAGCAGATTCGAACCTTGTGGTCTCATCCAGTTACATGCCATGCGATATGGAACCGTAAGAATATCCATA-----CCTCCCTATATGTTTATAT---------------------ATTTCAATTCAT-----CTTGATG----------------------------------AGAGT-GCTGAATGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Salvia_officinalis CCATTTACCAACCTAAAGGAATCTACACCAGTGCTAAGGTGAGAA--------GAGAGAATCGAYRATTTTGTACCCATATATGCT----------------CCTGATTTT-TCAAT-CCTCAT--TTTT----TGCTCCACTTKTAC------TATA--TATAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCRTTCTCAGACTTCTATCAGCTCAACCTACCTGATCATTTTAAGAGCTSTTTTGAATTCATTGATGGGTATGA-----ACAATAGTATTAATTAATTCTGTGTTGATYTAAATAARTAGTGG-----------TGTTACAGCTTAAA---TCRTA-----------TGCAGGTATGAGAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCYGACAGAGTTGTAACTGTGAGCCCCTACTAYGCCCAGGAACTTGTTTCTGGTCCTGATAAAGGAGTTGAGTTGGACAACATCCTCCGTAGCATTAGTTGTTCMGTCTCTGGCATCGTGAATGGCATGGATACTCAAGAGTGGAACCCAATGACTGATAAATACATTGATTATCACTTTGATATTACCACTGT----AAGAA-TAATTGAACTATAT-AT----CATCTC-----------------AAGTC----TTG----CTTATTGAAGAGTACAAT-----------------------------------------ATT----GAAAATCCG-----TATGTWTGTTTCAGGTCATGGATGCTAAGCCATTGTTGAAGGAAGCTCTTCAAGCATCAGTGGGGTTGCCTGTCGATAGGAGCATTCCTCTCATTGGATTTATAGGCAGACTTGAAGAACAAAAGGGATCAGATATTCTTGTGGCTGCACTTCATAAATTTATYGGGATGGATGTTCAAGTAGTCATCCTTGTAAGTAGTC-------------------YGA--GCAT--------TATTGTYWTGT---CTTGTG-AAAATGGAAC-ACGCTGTA----TG---ATGATCGACA-TGACGCCTC-TTGTTG----TATCAGGGAACGGGGAAGAAGAAGTTYGAGAAGGAGATTGAGCAACTTGAGGAGATGTACCCTGATAAGGCCAGAGGAGTRGCTAAATTCAACGTKCCGTTGGCCCATACCATAACTGCTGGTGCTGATTATATGTTGGTTCCTAGTAGATTTGAACCTTGTGGTCTCATYCAGTTACATGCCATGCGATATGGGACYGTAAGA---TCCCYA--------------------------AGTTTCTATTT-CATTTC-ATTTCATTTCAT-----TTAGATG------------------------AGATGAGATTAGAGTTGGTGAATGAAAAATGTAT----GTCTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Salvia_patens CCATTTACCAGCCTAAAGGAATGTACACCAACTCTAAGGTGAGAAAGAATCTGTAGAGAATTGAAAA-TTCGTT----------------------------CCTGATTTT-TGAAT-CCTCACACTTTT-----GCTTATCTGCTAC------TTTA--TATAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGGTTCGCGTTCTCCGACTTCTATCTGCTCAATCTACCTGATAACCTCAAGAGCTCTTTTGAATTCATTGATGGAT--------------------------------------------------------------------------------------------------------ATGAGAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCTGGGATTATAGAATCAGACAGAGTTGTAACTGTGAGCCCCTATTACGCCGAGGAACTTGTTTCTGGTCCTGATAAAGGAGTTGAGTTGGACAACATCCTCCGTTGCATTAATTTTCCTGTCTCTGGCATTGTAAACGGCATGGATACTCAAGAGTGGAACCCATTGACTGATAAACACATAGACTATCACTTTGATATCACCACTGT----AAGGA-TAATTGAA----AT-ATT---CATGTC-----------------AAGTC----TTGAATGTTTATTGAAGAGTAGAATTAATGTGG--------------------TTTG-GTTCCATTATT-------------------------GTTTCAGGTTACGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCATCAGTGGGCTTGCCTGTTGATAAGAACATTCCTCTCATTGGATTTATTGGGAGACTTGAAGAACAAAAGGGATCAGATATCCTTGTCGCTGCACTTGATAAATTTATTGGGATGGATGTTCAAGTAGTCATCCTTGTAAGTAGTA-------------------TGA--GCAT---AT-ACTATTGTT-TAT---CTTGTC-AAAGTCGATC-AC--TGTA----TT---ATGA-CGA---TTGC------TCGTTG----CATCAGGGAACCGGGAAGAAGAAGTTCGAGAAGGAGATTGAGAAACTTGAGGAAATGTACCCTGATAAAGCTAGAGGAGTGGCTAAATTCAATGTGCCCTTGGCCCATACCATAACTGCTGGTGCTGACTTTATGTTGGTTCCTAGCAGATTCGAACCGTGTGGTCTCATCCAGTTACATTCCATGCGATATGGAACCGTAAGAATATCCATA-----CCTCCCTATATGTTTACA-----------------------TTTCATTTCAT-----ATAGATG--------------------------------------------AATGAAATA----------TCT-----GTTGTTGG-------------------------------------------------------------------------------------------------------------------------------------------ATCAGGTACC---------------- Salvia_przewalskii CCATTTACCAACCTAGAGGAATCTACACCAATGCTAAGGTGAGAACGAAGYTTGAGAGAATCAATGA-TTTGTT----------------------------CCTTATTTT-TCA-T-CCTCAC--TTTTAATRTGCTTCACTGCTAC------TATA--TGTAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCGTTCTCAGACTTTTATCAGCTCAATCTACCTGATCAACTTAAGAGCTCTTTTGAGTTCATTGATGGGTATGA-----ACAATA-------------------TGATCTAAATAAGTMGTGTATGTCAGATATTGTTACAKATTAAG---TTATA-----------TGCAGGTATGAGAAACCGGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCAGACAGAGTTGTAACTGTGAGCCCCCACTACGCCAAGGAACTTGTTTCTGGTCCCGATAAAGGAGTTGAGTTGGACAACATCCTCCGTAGCATTCCTTGTTCTGTCTCTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCATTGACTGATAAATACATCGATTATCACTTTGATATCACCACTGT----AAGAA-TAATTGAA----AT-AT----CAT------------------------------------CTTATTCAA------------TGTGG--------------------TTTG-GTT-CCTTATT----SAAAA---------TGTGCACGTTTCAGGTTATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCATCAGTCGGCTTASCTGTWGATAGGAACATTCCTCTCATTGGATTTATAGGCAGACTTGAAGAACAAAAAGGATCAGATATCCTTGTCGCAGCAATTGATAAATTTATTGGGATGGATGTTCAAGTAGTCATCCTTGTAAGTAGTC-------------------TGA--GCGT--------TATTGTT-TATGATCTTGTC-AAAATCGAAC-AC--TGTA----AT---ATGA-GGA---TC--------TTGTTG----CATCAGGGAACCGGGAAGAAGACGTTCGAGAAGGAGATTGAGAAACTTGAGGAGATGTACCCTGATAAAGCCAGAGGAGTGGCCAAATTCAATGTGCCCTTGGCCCATACCATAACTGCTGGTGCTGATTATATGTTGGTTCCTAGCAGATTCGAACCTTGTGGTCTCATCCAGTTACATGCCATGCGATATGGAACCGTAAGAAGATSCCTAGGCTAGCTCCC--TATGTTAATA-----------------------TTTCATTTCKT-----TTAGATG----------------------------------AGAGT-GTTGAATGAAAGAGATATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Salvia_roemeriana CCATTT-CCAACSTAAAGGAATCTACACCAATGCTAAGGTGAGAA--------GAGAGAATCAATGATTTTGTACTCCTGAA--GT----------------CCTGATTTT-TCAAT-CCTCAT--TTTT----TGCTTCACTGCTGC------TATA--TATAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTCGCATTCTCAGACTTCTATCAGCTCAACCTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGTACAA-----ACAATATTAT-----AATTCTGTGTT-ATCTAAATAAGTACTGG-----------TGTTACAGATTGAA---TTATA-----------TACAGGTATGAGAAACCAGTGAAGGGGAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCACATAGAGTTGTAACTGTGAGCCCATACTATGCCCAGGAACTTATTTCTGGTCCGGACAAAGGAGTTGAGTTGGACAACATCCTCCGTAGCATTAGTTGTTCCGTCTCTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCAATGACTGATAAATACATTGATTATCACTTTGATATTACCACTGT----AAGAA-TAAGTGAACTACTT-AT----CA----------------------AGTC----TTG----ATTATTGAAGAGTACAAT-----------------------------------------ATT----GAAACTCTG-----TACTTATGTATCAGGTCATGGATGCTAAGCCATTGTTGAAGGAAGCTCTACAAGCATCAGTGGGGTTGCCTGTTGATAGGAGCATTCCTCTAATTGGATTTATTGGCAGACTTGAAGAACAAAAGGGATCAGATATCCTTGTGGCTGCACTTCATAAATTTATTGGGATGGATGTTCAAGTAGTCATCCTTGTAAGTAGTC-------------------TGA--GCAT--------TATTATTTTAT---CTGGTG-AAAATGGAAC-ACAAGGTA----TG---ATGATCGACA------CCTC-TTGTTG----CATCAGGGAACGGGGAAGAAGAAGTTCGAGAAGGAGATTGAGCAACTTGAGGAGATGTACCCCGATAAGGCTAGAGGAGTGGCCAAATTCAACGTGCCGTTGGCCCATACCATAACAGCTGGTGCTGATTATATGTTGGTTCCTAGTAGATTTGAACCTTGTGGTCTCATCCAGTTACATGCCATGCGATATGGGACCGTAAGA---TCCCTA--------------------------TATTTCCATTT------C-ATTTCATTTCATTAAAATGAGATG-----------------------------AGACTAGAGTTGGTGAATGAAATGT------ATGTCTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Salvia_sclarea --------------------------------------------------------------------------CTCATCTATGCT----------------TCTGATATT-TCAAT-CCTCAT--TTTT---TTGCTTCATTGCTAC------TATA--TATAGGTTGCCTTGTGCATCCACAACATTGCGTATCAGGGAAGATTCGCATTCTCAGACTTCTATCAGCTCAACCTACCTGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGTATGA-----WCAATATTAATTAT---TTCTGTGTTGATGTAAATTAGTAGTGG-----------TGTTAAAGATTAAA---TTATA-----------TACAGGTATGAGAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCACACAGAGTCGTAACTGTGAGCCCCTACTATGCCCAGGAACTCGTTTCTGGTCCTGATAAAGGAGTTGAGTTGGACAACATCCTCCGTAGCATTACTTGTTCCGTCTCTGGCATCGTAAATGGAATGGATACWCAAGAGTGGAACCCAATGACTGATAAATACATTGATTATCACTTTGATATTACCACTGT----AAGAA-TATTTGAACTAYAT-AT----CATTTT-----------------AAGTC----TTG----CTTATTGAAGATTACAAT-----------------------------------------ATY----GAAAATCCGG----GATGTACGTTTCAGGTCATGGATGCTAAGCCATTGTTGAAGGAAGCTCTTCAAGCATCAGTGGGGTTGCCTGTTGATAGGAACATTCCTCTTATTGGATTTATAGGCAGACTTGAAGAACAAAAGGGATCAGATATTCTTGTGGCTGCACTTCATAAATTTATCGGGATGGATGTTCAAGTAGTCATCCTTGTAAGTCGTC-------------------TGA--GCAC--------TATTTTT-TGT---CTGGT--------GAAC-ACATTGTA----TG---ATGATCGACA-CGAGACTTC-TTGCTG----TATCAGGGAACGGGGAAGAAGAAATTCGAGAAGGAGATTGAGCAACTCGAGGAGATGTACCCTGATAAGGCTAGAGGAGTGGCTAAATTCAATGTGCCGTTGGCCCATACCATAACGGCTGGTGCTGATTATATGTTGGTTCCTAGTAGATTTGAACCTTGCGGTCTCATCCAGTTACATGCCATGCGATATGGGACCGTAAGA---TCCCTA---------------TGTTTCTATTCTATTTCTATTTCTATTTCTATTTCATTTCAT-----TTAAATG------------------------ATATGGGATTAGAGTTGGTGAATGAAAT--GTAT----GTCTCTTGTGTTGTTTG-------------------------------------------------------------------------------------------------------------------------------------------ATCAGATACCTATCTGTGCTTCAACA Salvia_similis CCATTTACCAACCTCAAGGAATCTACACCAAYGCTAAGGTGAGAATGAAGCTAGAGAGAATCGAGAA-TTTGTT----------------------------CCTGTTTTT-TCAAT-TCTCAC--AYTT-----GCTTCTCTGCTAC------TATACATATAGGTTGCCTTGTGCATCCACAACATTGCCTATCAGGGAAGATTTGCGTTCTCAGACTTCTATCTGCTCAATCTACCKGATCAACTCAAGAGCTCTTTTGAATTCATTGATGGGT--------------------------------------------------------------------------------------------------------ACGAGAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAGTCTGACASAGTTGTAACTGTGAGCCCCTATTATGCCAAGGAACTTGTTTCTGGTCCCGATAAAGGTGTTGAGTTGGACAACATCCTACGTAGCATTCCTCTTTGTGTGTCTGGCATTGTAAACGGCATGGATACTCAAGAGTGGAACCCATTGACTGATAAACACATCGACTATCACTTTGATATCACCACTGT----AAGGA-TAGTTGA------T-ATT---AAACTC-----------------AAGTC----TTA----CTCATTGAAGASTAGAGTTAATGTGGGTTTTTTTT----------YTTTT--YCCTGTTATT-------------------------TTTTCAGGTTATGGATGCTAAGCCATTGCTGAAGGAAGCTCTTCAAGCATTAGTGGGCTTGCCTGTTGATAAGAACATTCCTCTCATAGGATTTATTGGCAGACTTGAAGAACAAAAGGGATCAGATATCCTTGTCGCTGCRGTTGAAAAATTTATTGGGATGGATGTTCAAGTAGTCATMCTTGTAAGTATTC-------------------TGA--GCAT---GT-ACGATTGTT-TAT---CTTGTC-AAGGTCGAAC-TC--TGTC----TT---ATGA-CAA---TCAC------TGGTTG----CATCAGGGAACTGGGAAGAAGAAGTTCGAGAAGGAGATTGAGAAACTTGAGGAGCTGTACCCTGATAAAGCTAGAGGAGTGGCCAAATTCAATGTGCCATTGGCCCATGCCATAACTGCCGGTGCTGATTACATGTTGGTTCCTAGCAGATTCGAACCTTGTGGGCTCATCCAGTTACATGCCATGCGATATGGAACCGTAGGAATATCCTTG-----CCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zhumeria_majdae -----------------------------------------------------------ATCGAT-A-TTTGTT----------------------------CCTGATTTT-TCAAT-CCTCAC--ATTT----TGATTCACTGCTACTGTATGCATATATATAGGTTGCCCTGTGCATCCACAACATTGCCTATCAAGGAAGATTCGCGTTCTCAGATTTCTCTCTGCTGAACCTACCTGATCAACTCAAAAGCTCTTTTGAATTCATTGATGGGTATGA-----ACAA--TTAATACA-----CTGTGTTGATCTAAATAACTGGTG----TTAGATATTGTTACAGATTGAAAATTTATA-----------TGCAGGTATGAGAAACCAGTGAAGGGAAGGAAAATTAACTGGATGAAGGCCGGGATTATAGAATCAGACAGGGTTGTAACTGTGAGCCCCTACTACGCCAAGGAACTTGTTTCTGGTCCAGATAAAGGAGTTGAGTTGGACAACATCCTCCGTAGCATTCCTTGTTCTGTCACTGGCATCGTAAATGGCATGGATACTCAAGAGTGGAACCCAATGACTGATAAATACGTCTATTATCACTTTGATATCACCACTGT----AAGAA-TAATTTAA----ATCAT----CATCTT-----------------AAGTC----TTG----CTTATTGAAGAGTATTATTAATGTGG-------------------TTTTG---------------------------------GTACGTTTCAGGTCATGGATGCAAAGCCATTGCTGAAGGAAGCTCTTCAAGCATCAGTCGGCTTGCCTGTTGACAGGAACATTCCTCTCATTGGATTTATTGGCAGACTTGAAGAGCAAAAGGGATCAGATCTCCTTGTTGCTGCACTTGATAAATTTATAGGGATGGATGTTCAAGTGATAATCCTTGTAAGTAGTC-------------------TGA--CCAT--------TACTGTTTTAT---CTTGTC-AAAGCCGAAC-AC--TGTA----TGTTTATGA-TGA---TCAC------TTGTTG----CATCAGGGAACGGGGAAGAAGAAGTTCGAGAAGGAGATTGAGAAACTTGAGGAGATGTACCCTGATAAAGCCAGAGGAGTGGCCAAATTCAATGTGCCACTGGCCCATACCATAACTGCTGGTGCTGATTATATGTTGGTCCCTAGCCGATTCGAACCTTGTGGGCTGATCCAGTTACATGCCATGCGATATGGAACCGTAAGAAGATCCACG-----CCTCCC--TATCTTTATA-----------------------TTTCATTTAGA-----TATTATG----------------------------------AGAGT-GGTGAATGAAATAT----------CT-----GTTGATGG-------------------------------------------------------------------------------------------------------------------------------------------ATCAGATACC---------------- ; END; BEGIN paup; charset exclude = 131 -135 282 -305 650 -662 698 -701 728 -747 776 -788 983 -1001 1011 -1018 1053 -1055 1059 -1062 1065 -1067 1076 -1078 1083 -1088 1095 -1098 1312 -1316 1335 -1357 1381 -1404 1435 -1451 1460 -1598; END; BEGIN SETS; CHARSET excluded = 131 - 135 282 - 305 650 - 662 698 - 701 728 - 747 776 - 788 983 - 1001 1011 - 1018 1053 - 1055 1059 - 1062 1065 - 1067 1076 - 1078 1083 - 1088 1095 - 1098 1312 - 1316 1335 - 1357 1381 - 1404 1435 - 1451 1460 - 1598; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1624; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1624; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1624; END; BEGIN TREES; Title Salvia_waxy_names_truncated_MrBayes; ID 015b0e967b4d11; LINK Taxa = Taxa; TRANSLATE [0] 1 Chaunostoma, [1] 2 Lepechinia_calycina_BTD20, [2] 3 Lepechinia_bullata_BTD223, [3] 4 Lepechinia_salviae_RSJ, [4] 5 Lepechinia_hastata_BTD44, [5] 6 Dorystaechas_hastata, [6] 7 Hedeoma_piperitum, [7] 8 Melissa_officinalis, [8] 9 Perovskia, [9] 10 Rosmarinus, [10] 11 Salvia_aristata, [11] 12 Salvia_axillaris, [12] 13 Salvia_californica, [13] 14 Salvia_carduacea, [14] 15 Salvia_glutinosa, [15] 16 Salvia_greatae, [16] 17 Salvia_officinalis, [17] 18 Salvia_patens, [18] 19 Salvia_przewalskii, [19] 20 Salvia_roemeriana, [20] 21 Salvia_sclarea, [21] 22 Salvia_similis, [22] 23 Zhumeria_majdae; TREE con_50_majrule = (7:0.044204,((8:0.030039,(5:0.005609,(1:0.005579,2:0.011649):0.001582,(3:0.001694,4:0.004575):0.003561):0.012619):0.004929,((10:0.049057,(9:0.017749,(20:0.029902,(17:0.016723,21:0.032314):0.004545):0.014698):0.00469):0.005406,(((11:0.035149,23:0.026202):0.022923,(15:0.011224,19:0.007028):0.019573):0.004656,(6:0.030723,(14:0.061372,((13:0.010182,16:0.003471):0.01539,(18:0.043508,(12:0.041218,22:0.056335):0.007916):0.00666):0.007673):0.003094):0.005837):0.011595):0.020261):0.044204); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1490599931381; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2164039741465629037; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 159591008923090466; mqVersion 311; checksumv 0 3 1573669174 null getNumChars 1624 numChars 1624 getNumTaxa 23 numTaxa 23 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 627398.0 sumSquares -1.7063238268181335E20 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 221; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 989 644; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2164039741465629037 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSourceEditMode #mesquite.trees.StoredTrees.StoredTrees; tell It; laxMode; setTreeBlock -2147483647; toggleUseWeights off; endTell; setAssignedID 1532.1490598327312.7862068895976113879; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 768 572; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(7:0.044204,((8:0.030039,(5:0.005609,(1:0.005579,2:0.011649):0.001582,(3:0.001694,4:0.004575):0.003561):0.012619):0.004929,((10:0.049057,(9:0.017749,(20:0.029902,(17:0.016723,21:0.032314):0.004545):0.014698):0.00469):0.005406,(((11:0.035149,23:0.026202):0.022923,(15:0.011224,19:0.007028):0.019573):0.004656,(6:0.030723,(14:0.061372,((13:0.010182,16:0.003471):0.01539,(18:0.043508,(12:0.041218,22:0.056335):0.007916):0.00666):0.007673):0.003094):0.005837):0.011595):0.020261):0.044204);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; setEditMode 'Tree recovered from: con 50 majrule [Trees stored in block "Trees from "waxy_MrBayes.tre""] [Stored Trees] [Stored Trees] [Stored Trees]'; desuppressEPCResponseNORESET; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #159591008923090466 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 768 572; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;