#NEXUS [written Wed May 11 14:15:44 CEST 2011 by Mesquite version 2.74 (build 550) at octacore.mikrob.slu.se/130.238.112.219] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=15; TAXLABELS Eurotium_herbariorum_CBS516.65 Eurotium_amstelodamii_CBS518.65 Monascus_floridanus_ATCC64205 Monascus_argentinensis_CBS109402 Monascus_lunisporas_CBS113675 Monascus_pallens_IMI356820 Monascus_kaoliang_CBS302.78 Monascus_paxii1_FRR2193 Monascus_pilosus_FRR2194 Monascus_purpureus_FRR1596 Monascus_ruber_FRR2447 Monascus_sanguineus_IMI356821 Xeromyces_bisporus_FRR0525 Chrysosporium_inops_CBS297.95 Chrysosporium_xerophilum_CBS153.67 ; END; BEGIN CHARACTERS; TITLE Betatubulin_alignment; DIMENSIONS NCHAR=763; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Eurotium_herbariorum_CBS516.65 TGGTAACCAAATCGGTGCTGCTTTCTGGTATGTC-TACA-ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGAGGGTCGGATTAAGTGATATACTAACAGTATCATAGGCAGACTATCTCCGGCGAGCACGGTCTCGACGGCTCTGGTGTGTAAGTACCATCGGGTCTTCGG------------------------------------GATGG--ACGCGT-------ATCGGATAT-----------------------------GGATATCTAATG-GA-----CTGCAGCTACAATGGCTCCTCTGACCTCCAGTTGGAGCGGATGAACGTCTACTTCAACGAGGTTTGTACA-------TTCATTTGTGTT--------TGTGTGGAAACAAGT--------------CTGACAGT-----GACAGGCCTCCAACAACAAATATGTCCCCCGTGCCGTCCTCGTCGACCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTA------------ Eurotium_amstelodamii_CBS518.65 -------------GGTGCTGCTTTCTGGTATGTTTTTAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGA--GATGGATTGGGAGATATACTAACAGTATCACAGGCAGACTATCTCCGGCGAGCACGGTCTCGACGGCTCTGGTGTGTAAGTACAGTCGGGTCTCCGA------------------------------------GATGG--ACGCGT-------ATCGGATAT-----------------------------GGATATCTAACG-GA-----TTTCAGCTACAACGGATCCTCCGACCTCCAGTTGGAGCGTATGAACGTCTACTTCAACGAGGTTTG-CCTA------TCCGTTCGTGTT--------TGTGTGGAAACAGCT--------------CTGACAGT-----GATAGGCCTCCAACAACAAATATGTCCCCCGTGCCGTCCTCGTCGACCTTGAGCCAGGTACCATGGATGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCCGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGTA- Monascus_floridanus_ATCC64205 ------------CGGTGCTGCTTTCTGGTATGTTGTTCA----------------------------------------GTAGATG-AAATTGAGAACGCGAGCGCGCGGGGTCCTCGAGAGGATTTGTTTCCTGCATGAGACTCCGTTGACCACGTGTTTTTCT---------------------------------------------------------------------GAGGGAGTT-TTTGTTGA----C-TGGTCTTATATAGGCAAAACATCTCTGGTGAACACGGCCTTGATGGCTCCGGTGTGTAAGTAGGACCTT-TTC-----------------------------------GTGTCTCCGTTTGGAA-------------GAAGTCGGAAGAGGAGATGG--GAGAGGGACAT-CCATGTCTGATGAGG-----TGATAGTTACCATGGCACTTCCGACCTTCAGTTGGAGCGCATCAACGTTTACTTCAACGAGGTTAGTCCCATGGC--TGGGTTTCTGGTT-------T--------TGGAGTTTGACAAGTTT---CTAATGGTTTGG-AATAGGCCAGTGGACAGAAGTATGTTCCTCGCGCCGTCCTGGTCGACCTTGAGCCTGGTACCATGGATGCCGTCCGCGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTGTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCAC-------------- Monascus_argentinensis_CBS109402 ------------CGGTGCTGCTTTCTGGTATGTTGTTCG----------------------------------------ATGATTG-ATATTGAGAACGTG-------AGAACGCGCGGGCTCC-------TCGGATGAACGGCT-----------------------------------------------------------------------CTGTTGCTTCACGTCGGCGGGGGA-TT-TTTGTTGA----CTCG-TCTTTTATAGGCAGAACATCTCTGGTGAACACGGCCTTGATGGCGCTGGTGTGTAAGTGGGATCTTCTCGAA---------------------------------TCTCTGTTTGCAAGAGATATACGCAATCGGAGAAAAATAAATA----GGAAAGGAGGGACAT-CCATGTCTGATGAGA-----TGATAGTTACCATGGCACTTCCGATCTCCAGTTGGAGCGCATCAATGTTTACTTCAATGAGGTTAGTCCTATGGC--TGAGTTGCTGCTC------TTGAATCAAAAGAAGGTT------------CTGATGGTTT-GAAATAGGCCAGTGGACAGAAGTATGTTCCTCGCGCCGTCCTGGTCGACCTTGAGCCCGGTACCATGGATGCCGTCCGCGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTGTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCAC-------------- Monascus_lunisporas_CBS113675 --------------GTGCTGCTTTCTGGTATGTTGTTCA----------------------------------------ATAATTG-ATATTCAGAACGTG-------GGAACGCGCGGGGTCCC--TCGGAAGGATGTGTTTTCTTGCATGAGGCT----------------------------------------------------------CTTGTCGATCCACGTTCGGGGAGAATTCGATTATTGA----TTAG---TTTTATAGGCAGAACATCTCTGGTGAACACGGCCTTGACGGCGCTGGTGTGTAAGTCTATTCTTTGCGAA---------------------------------CCTCG--------------------AGATAATTGGGAATAGA--------------GGACATCCAATGTCTAATGAGA-----CGATAGTTACCATGGAACTTCCGACCTTCAGTTGGAGCGCATCAACGTCTACTTCAATGAGGTTAGTCATACGGC--T-ACTTTCTAAGC------TTGAAG---AAGAAGT--------------CTGATAGTTTGAAAATAGGCCAGTGGACAGAAGTATGTTCCTCGCGCCGTCCTGGTCGACCTTGAGCCTGGTACTATGGATGCCGTCCGCGCTGGTCCCTTTGGTGAACTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACT------------- Monascus_pallens_IMI356820 --------AAATCGGTGCTGCTTTCTGGTATGTCGTTCA----------------------------------------ATGGATG-ATATTGAGATCGCG-----CAGAACCTCGGAAGGATTCAGTTTTCTGGATGAGGCTTCGGTGATT-CGCGTGTGTTT-----------------------------------------------------------------------GTTCGGTT-TTTGTTGA----CTTTATTCTCTATAGGCAGAACATCTCTAGTGAACACGGCCTTGATGGCTCCGGTGTGTAAGTGGAACCTTCTCC-----------------------------------GTGTCTCTGTTTTGTGATGATATTCAGAGCCGGAGGAAGAAAC----GGAAAAGAAGGGCAT-CAACGTCTGATAAAA-----CTATAGTTACCATGGGACTTCTGACCTCCAGCTGGAGCGTATCAACGTTTACTTCAATGAGGTGTGTCCTATGGC--TAGATTTCTATTCTTTTTTTT--------TGAAGCTCGACAAGTTT---CTGACAGCTTGG-AGTAGGCCAGTGGACAGAAGTATGTCCCACGCGCCGTCCTGGTCGACCTCGAGCCTGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTGTTCGGCCAGTCCGGTGCTGGTAACAACTGGGC------------------------ Monascus_kaoliang_CBS302.78 ------------CGGTGCTGCTTTCTGGTATGTTATTCA----------------------------------------GGC-----GATTGA-----ACGATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTTTGTTTT-------------------------------------------------------------------CTGGGTCCGAGTT-TTTGCTGA----CTTGTTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTAAGTAGAAACCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTACAGGGTGTGAGG----GGAA-A-AGGGGCAT-CAATGTCTAATGTGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGG---TGGATTCCTATT-----------------CCAAGTAGAGCACCTTT---CTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCATCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTA------------ Monascus_paxii1_FRR2193 ------------CGGTGCTGCTTTCTGGTATGTTATTCA----------------------------------------GGCTATTGAAT---------GAATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTTCGTGTTTT-----------------------------------------------------------------CTGGGGTCGAGTT-TTTGCTGA----CTTGTTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTAAGTAGAACCCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTGCAGGGTGTGAGG----GG--GAAAGGGGCAT-CAATGTCTAATGTGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGA---TGGATTCCTATT-----------------CCATGTAGAGCGCCTTT---CTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGTA- Monascus_pilosus_FRR2194 TGGTAACCAAATCGGTGCTGCTTTCTGGTATGTTATTCA----------------------------------------GGCTATTGAAT---------GAATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTTCGTGTTTT-----------------------------------------------------------------CTGGGGTCGAGTT-TTTGCTGA----CTTGTTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTAAGTAGAACCCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTGCAGGGTGTGAGG----GG--GAAAGGGGCAT-CAATGTCTAATGTGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGA---TGGATTCCTATT-----------------CCATGTAGAGCGCCTTT---CTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGTA- Monascus_purpureus_FRR1596 TGGTAACCAAATCGGTGCTGCTTTCTGGTATGTTATTCA----------------------------------------GGCGATTGAAC---------G-ATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTT--TGTTTT-----------------------------------------------------------------CTGGGTCCGAGTT-TTTGCTGA----CTTGTTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTAAGTAGAAACCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTACAGGGTGTGAGG----GG--AAAAGGGGCAT-CAATGTCTAATGTGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGG---TGGATTCCTATT-----------------CCAAGTAGAGCACCTTT---CTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGTA- Monascus_ruber_FRR2447 TGGTAACCAAATCGGTGCTGCTTTCTGGTATGTTATTCA----------------------------------------GGCTATTGAAT---------GAATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTTCGTGTTTT-----------------------------------------------------------------CTGGGGTCGAGTT-TTTGCTGA----CTTGTTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTAAGTAGAACCCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTGCAGGGTGTGAGG----GG--GAAAGGGGCAT-CAATGTCTAATGTGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGA---TGGATTCCTATT-----------------CCATGTAGAGCGCCTTT---CTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGTA- Monascus_sanguineus_IMI356821 ---------------------------------------------------------------------------------------------------TGATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTTTGTTTT-------------------------------------------------------------------CTGGGGTC-AGTT-TTTGCTGA----CTTGCTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTAGAAACCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTACAGAGTGTGAGG----GA---AAAGGGGCAT-CAATGTCTAATGCGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGA---TGGATTCTTATT-----------------CCAAGTAGAGCGCCTTTCTGCTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTA------------ Xeromyces_bisporus_FRR0525 ---------------TGCTGCTTTCTGGTATGTTCATGA----------------------------------------ACGACTGAGCTATACAAAAGATACAGGGACAAGACGGGTATAGCTTCGTTAGCAATTCTAAACGATGCAACTAGTTTTGTTCCTATTCTCTGTCTGTTTTTGG----------------------------------------------------------CTTGTTGGCTGA----C-TGTGTAC--ATAGGCAGCAGATCTCTGGTGAACACGGCCTTGATGGCTCCGGTCTGTAAGTGCGACGTCTTATCTGAACCCAATTCTCCCCGTTTTGCGGCGGCGATATGCAAATATGCAAATTGAGGAGGAAAGGACAATTGGATAACGGGATAATTCAAATCGGCGAC-CAATGTCTAACGGGGTGACG---TAGTTACCAGGGAACTTCGGACCTCCAGCAGGAGCGTTTGAACGTTTACTTCAACGAGGTTTGTACAGCAATGCAACTCTCCGGTCCAAGACGGACTGAAATATCTAA---------------CTGCTTCTTTTA-AACAGGCCCATGGACAAAAGTATGTTCCTCGTGCCGTCCTGGTCGACCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCTTTCGGTGAACTTTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCTGGTGCCGGTAACAACTGGGCCAAGGGTCACTA------------ Chrysosporium_inops_CBS297.95 ---------------------------------------TTTCAGATAATACACTTGTATAAAAGGAAAAAGGGGGAGAAAGAAAAGAAAAGAAAGGGAACGTGGTGGAGCTTCTTCTTGTATTGAGCTCTAGCTTTTTGTTTCCGTTGTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTCCTTCTCTTATCCTTTTTGCCCCTTAACTTCTGGGGT-TCTTT-TTGGCTGA----C-TGGGTGTTTATAGGCAGCAGATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTGAGTACGACCTTTTTTT---------------------TTTTCTCTTTTTGGCGGTTTTGTCTTTACGTTATATTACATATCTGGATTGGGAATTCTGGGTCGATCGATCGAA-CAACGTCTAACCGGG-CGA-TA-TAGCTACCATGGCACTTCGGATCTTCAATTGGAGCGTTTGAACGTTTACTTCAACGAGGTTCGTACC-CTGTCGTGGATTCCCTTTATACGTGGTAAAGGGCACAAAATTTCTAACCTAG---TTGTTTTCGAAA-AATAGGCCAGTGGTCAGAAGTATGTTCCTCGTGCTGTCCTGGTCGACCTTGAGCCTGGTACCATGGATGCCGTCCGTGCCGGTCCGTTCGGTGAACTTTTCCGTCCCGACAACTTCGTTTT-GGCC------------------------------------------------- Chrysosporium_xerophilum_CBS153.67 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGTCTAACGAGAACGA-TACTAGTTACCATGGCACTTCGGACCTTCAACTGGAGCGTTTGAACGTTTACTTCAACGAGGTTTGTACAACTGCAGCAAATTCTCCTTTGATGTTGT--------CGAGGCTTCGAAAATAT---CTGACTCGTCCA-AACAGGCCAGTGGTCAGAAATATGTCCCCCGTGCCGTCCTGGTCGACCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTGAACTTTTCCGCCCCGACAACTTCGTTT------------------------------------------------------- ; END; BEGIN MRBAYES; exclude 40 -244 253 -267 328 -429 445 -449 519 -575; Lset nst = 2 rates = gamma; Prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); mcmcp stoprule = yes stopval = 0.01; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 763; END; BEGIN TREES; Title 'Trees from "Betatubulin-final3.nex.con"'; LINK Taxa = Taxa; TRANSLATE 1 Eurotium_herbariorum_CBS516.65, 2 Eurotium_amstelodamii_CBS518.65, 3 Monascus_floridanus_ATCC64205, 4 Monascus_argentinensis_CBS109402, 5 Monascus_lunisporas_CBS113675, 6 Monascus_pallens_IMI356820, 7 Monascus_kaoliang_CBS302.78, 8 Monascus_paxii1_FRR2193, 9 Monascus_pilosus_FRR2194, 10 Monascus_purpureus_FRR1596, 11 Monascus_ruber_FRR2447, 12 Monascus_sanguineus_IMI356821, 13 Xeromyces_bisporus_FRR0525, 14 Chrysosporium_inops_CBS297.95, 15 Chrysosporium_xerophilum_CBS153.67; TREE Betatubulin_majrule_50_con = (1:0.04495547726562962,2:0.04516755914247161,((((3:0.01794931947005409,4:0.02576015633342332,5:0.06856247578303191):0.02152069512676948,6:0.07339813400996519):0.04392700946187821,((7:0.006115377978180813,10:0.002722268632868799,12:0.009572664692347143):0.005783629449772353,8:0.002842633001928396,9:0.002976020608032113,11:0.002846142321304393):0.03222204085740522):0.03594571022746935,((13:0.08619072466738684,14:0.06999554167748184):0.02832799854012512,15:0.0480257986545641):0.08138223135097304):0.2274794468109556); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 763; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 763; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1305116144788; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5212694745040598026; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1009101070548060479; mqVersion 274; checksumv 0 2 3042809288 null getNumChars 763 numChars 763 getNumTaxa 15 numTaxa 15 short true bits 15 states 15 sumSquaresStatesOnly 189580.0 sumSquares 189580.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 253; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1128 469; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5212694745040598026 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5212694745040598026; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 203; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 875 402; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 875 402; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5212694745040598026 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1131.1305116075624.8068763277645288692; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 875 402; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;