#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=89; TAXLABELS Pardofelis_sp._212075 Prionailurus_sp._150853 Lynx_rufus_133135 Prionailurus_sp._130416 Otocolobus_manul_105890 Caracal_aurata_105890 Otocolobus_manul_213566 Prionailurus_vivverinus_125972 Pardofelis_marmorata_133135 Prionailurus_sp._150951 Leopardus_pardalis_150951 Prionailurus_benegalensis_212075 Panthera_onca_5313 Prionailurus_benegalensis_161275 Panthera_onca_chB1.32M Otocolobus_manul_139216 Felis_silverstris_silvestris_203464 Pardofelis_badia_146417 Pardofelis_marmorata_216524 Otocolobus_manul_215122 Pardofelis_badia_150162 Pardofelis_marmorata_216162 Felis_sp._105890 Prionailurus_sp._ch1.181M Pardofelis_marmorata_150853 Prionailurus_sp._134463 Felis_nigripes_150951 Lynx_sp._154966 Caracal_caracal_133135 Neofelis_neofelis_212733 Prionailurus_sp._chA1.248M Leopardus_geoffroyi_chD4.80M Prionailurus_planiceps_212075 Lynx_canadensis_73133 Otocolobus_manul_212331 Felis_nigripes_212075 Leopardus_sp._133135 Leopardus_tigrinus_213798 Lynx_canadensis_106256 Caracal_serval_101187 Puma_yagouaroundi_101187 Lynx_lynx_204133 Prionailurus_vivverinus_164336 Felis_nigripes_99643 Pardofelis_marmorata_106256 Panthera_unica_134292 Pardofelis_marmorata_145617 Lynx_pardinus_106256 SINEC_Fc_R Otocolobus_manul_73133 Felidae_sp._203464_ Lynx_sp._139216_ Panthera_sp._782 Pantherinae_sp._chA1.248M Felidae_sp._214534 Leopardus_colocolo_122236 Felidae_sp._122236 Priondontidae_115304 Neofelis_neofelis_199572 SINEC_Fc2 Feliformia_sp._99534 Feliformia_sp._180515 Feliformia_sp._131713 Feliformia_sp._199572 Cryptoprocta_ferox_131713 Feliformia_sp._194731 Feliformia_sp._135256 Feliformia_sp._95036 Feliformia_sp._117885 Feliformia_sp._95892 Feliformia_sp._217179 Feliformia_sp._134929 Feliformia_sp._151787 Feliformia_sp._203536 Feliformia_sp._4743 Feliformia_sp._213652 Feliformia_sp._99463 Feliformia_sp._212906 Feliformia_sp._206155 Feliformia_sp._145754 Feliformia_sp._145617 Feliformia_sp._150913 Feliformia_sp._106256 Feliformia_sp._164336 Feliformia_sp._174511 Feliformia_sp._107176 Feliformia_sp._101187 Feliformia_sp._136949 Feliformia_sp._179189 ; END; BEGIN CHARACTERS; TITLE Subfamily_Tree_Short_Names; DIMENSIONS NCHAR=136; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Pardofelis_sp._212075 GGG--CCTGGGTGGGGCAGTCGGTTAAGGGTCCGAA-------TTCAGC-CAGGTCACGATTTCGTGATCCGGGAGT-TTGAGCCCCGGCTCAGGCTT--TGGGGTGATGGCTTAGCGCCTGGAGCCTG-TTTCCG Prionailurus_sp._150853 GGGCGCCTGGGTGGTGCAGTCGGTTAAGCGTCC-AC-------TTCAAC-CCGGTCACGATCTCCCGGTCCCTGAGT-TCCAACCCCGCGTCGGGCTC--TGGGCTGATGGCTTAAAACCTGGAACCTG-GTTCCC Lynx_rufus_133135 GGG--CCTGGGTGGGGCAGTCGGTTAAGTGTCCGAC-------TTCAGC-CAGGTCACGATTTCGCGGTCCGTGGAT-TCGAGCCCCGTGTCGGGCTT--TGGGGTGATGGGTCAGAGCCTGGAGCCTG-TTTCCT Prionailurus_sp._130416 GGGCACCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCAGTTTGGGAGT-TCGAGCCCCGCGTCAGGCTT--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Otocolobus_manul_105890 GGGCGCCTGGGTGGCGCAGTCGGTTAAGGGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCCGAGGGCTCGGAGTCGGGAGCCTG-TTTCGG Caracal_aurata_105890 GGGCGCCTAGGTGGCGCAGTTGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TTGAGCCCCGCGTCGGGCTC--TGTGCTGACTGCTCAGAGCCTGGAGCCTG-TTTCCG Otocolobus_manul_213566 GGGCCCCTGGGTGGCGCGGTCGGTTAAGCATCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGGGT-TCGAGCCCCGCGTCAGGCTCT-GGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Prionailurus_vivverinus_125972 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTTAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCAGGCTT--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTTTG Pardofelis_marmorata_133135 GGGCGCCTGGGTGGCGCAGTCGGTTGGGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCAGTCCGTGAGT-TCGAGCCCTGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Prionailurus_sp._150951 GGGCGCCTGGGTGGCACAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATTTCGCGGTCCATGAGT-TCGAGCCCCGCGTCGGGCTT--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Leopardus_pardalis_150951 GGGCACCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGACCTCGTGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGACTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Prionailurus_benegalensis_212075 GGGCG-CTGGGTGGCGCAGTCGGTTAAGCATCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAACCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCCG-TTTCCG Panthera_onca_5313 GGGCGCCTGGGTGGCGTAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCGG Prionailurus_benegalensis_161275 GGGCGCCTGGGTGGCACAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTTGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCCC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Panthera_onca_chB1.32M GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTGACGATCTCACGGTCCATGAGT-TCGAGCCCCGCGTCAGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Otocolobus_manul_139216 GGG--CCTGGGTGGCGCAGTCGGTTAAGCATCCGAC-------TTCAGC-CAGGTCACGATCTCGCGCTCCGTGAGT-TCGAGCCCCGCGTCAGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Felis_silverstris_silvestris_203464 GGGCGCCTGGGTGGCGCAGTTGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCG- Pardofelis_badia_146417 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCC Pardofelis_marmorata_216524 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCA Otocolobus_manul_215122 GGGCACCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Pardofelis_badia_150162 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCATCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Pardofelis_marmorata_216162 GGGCGCCTGGGTGGCACAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Felis_sp._105890 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCAGGGTCCGTGAGT-TCGAGCCCCGCGTCAGGCTCTGTGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Prionailurus_sp._ch1.181M GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTTGCGGTCCGTGAGT-TCGAGCCCCACGTCAGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Pardofelis_marmorata_150853 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCTGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TTGAGCCCCGCGTCAGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Prionailurus_sp._134463 GGGCGCCTGGGTGGCGCAGTCCGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCATCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Felis_nigripes_150951 GGGCGCCTGGGTGGCACAGTCGGTTAAGCATCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTGTTTTCCG Lynx_sp._154966 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGCCAGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Caracal_caracal_133135 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TAGAGCCCCGCGTCAGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Neofelis_neofelis_212733 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCAGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Prionailurus_sp._chA1.248M GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATGTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCAGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Leopardus_geoffroyi_chD4.80M GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCTG Prionailurus_planiceps_212075 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGGGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Lynx_canadensis_73133 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-CTTCCG Otocolobus_manul_212331 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGCTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Felis_nigripes_212075 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Leopardus_sp._133135 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Leopardus_tigrinus_213798 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCGGTCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Lynx_canadensis_106256 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCG-TCTGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAAAGCCTGGAGCCTG-TTTCCG Caracal_serval_101187 GGGCGCCTGGGTGGCCCCGTCGGTTAAGCGTCCGAC-------TTCAGC-CCGGTCACGATCTCGCG-TCCGTGAGT-TCGAGCCCCGCGTCGGGCTT--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Puma_yagouaroundi_101187 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCG-TCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Lynx_lynx_204133 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCACG-TCCGGGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Prionailurus_vivverinus_164336 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCTTCCGAC-------TTCAGC-CAGGTCATGATCTCACG-TCCGTGAGT-TCGAGCCCCGCGTCAGGCTC--TGGGCTGATGGCTCGGAACCTGGAGCCTG-TTTCCG Felis_nigripes_99643 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCATCCGAC-------TTCAGC-CAGGTCACGATCTCGCG-TCCGTGAGT-TCGAGCCCCGCGTCAGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCA Pardofelis_marmorata_106256 GGGCGCCTGGGTGGCACAGTCGATTAAGCATCCGAC-------TTCAGC-CAGGTCACGATCTCGCG-TCCGTGAGT-TTGAGCCCCGCGTCAGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCTG Panthera_unica_134292 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCG-TCTGTGAGT-TCGAGCTCCGCGTCAGGCTC--TGGACTGATGGCTCGGAGCCTGGAGCCTG-TTTCCG Pardofelis_marmorata_145617 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCG-TCTGGGAGT-TCGAGCCCCGCGTCAGGCTC--TGGGC--------------CTGGAGCGTG-TTTCCG Lynx_pardinus_106256 GGGCGCCTGGGTGGC-CAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACTATCTCGCG-TCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG SINEC_Fc_R GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGC-CAGGTCACGATCTCGCG-TCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTT??? Otocolobus_manul_73133 GGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGAC-------TTCAGCTCAGGTCACGATCTCGCGGCCTGTGAGT-TCGAGCCCCGCGTCAGGCTC--TGGGCTGATGGCTCAGAGCCTGGAGCCTG-TTTCCG Felidae_sp._203464_ GGGCGCCTGTGTGGCTCAGTCAGTTAAGCTTCTGAC-------TTCAGTTCAAGTCATGATCTCGCA-TCTGTGAGT-TCAAACCCCATGTCGGGCTG--TATGCTAACAGCTTGGAGCCTGGAGCCTA-CTTCAG Lynx_sp._139216_ GGGCGCC-GGGTGGCTCAGTCGGTTAAGCATCCGAC------TTTCAGCTCAGGTCACGATCTCACGGTCCGTGAGT-TTGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-CTTCCG Panthera_sp._782 GGGCGCCTGGGTGGCTCAGTCGGTTGAGTGTCCGAC-------TTCAGCTCAGGTCATGATCTCACACTCTGTGAGT-TCGAGCCCCGCATCGGGCTC--TGTGCTGATGGCTCAGAGCCTGGAGCCCG-CTTCAG Pantherinae_sp._chA1.248M GGGCGCCTGGGTGGCTCAGTCGGTTAAGCGTCCGAC-------TTCGGCTCAGGTCATGATCTCGCGGTCCGTGAGT-TCGAGCCCTGCGTCGGGCTC--TGTGCTGACAGCTCAGAGCCTGGAGCCTG-TTTCAG Felidae_sp._214534 GGGCGCCTGGGTGGCTCAGTCGGTTAAGCGTCCGAC-------TTTGGCTCAGGTCACGATCTCGCGGTATGTGAGT-TCGAGCCCTGCGTCGGGCTC--TGTGCTGACTGCTCAGAGCCTGGAGCCTG-TTTCAG Leopardus_colocolo_122236 GGGCGCCTGGGTGGCTCAGTCGGTTGAGCGTCCGAC-------TTCGGCTCAGGTCATGATCTCGCA-TCCGTGAGT-TCGAGCCCCGCGTTGGGCTC--TGTGCTGACCGCTCAGAGCCTGGAGCCTG-TTTCAG Felidae_sp._122236 GGGCACCTGGGTGGCTCAGTCGGTTGAGCGTCCGAC-------TTCGGCTCAGGTCGTGATCTCGCA-TCCGTGAGT-TCGAGCCCCATGTCGGGCTC--TGTGCTGACCGCTCAGAGCCTGGAGCCTG-TTTCCG Priondontidae_115304 GGGCACCTGGGTGGCTCAGTCGGTTGAGCGTCCGAC-------TTGGGCTCAGGTCATGATCTCGCA-TCTGTGAGT-TCGAGCCCCATGTCGGGCTC--TGTGCTGACAGCTCAGAGCCTGGAGCCTG-TTTCGG Neofelis_neofelis_199572 GGGCGCCTGGGTGGCTCAGTCGGTTGAGCGTCCGAC-------TTCAGCTCAGGTCACGATCTCGCG-TCCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGGGCTGATGGCTCGGAGCCTGGAGCCTG-CTTCCG SINEC_Fc2 GGGCGCCTGGGTGGCTCAGTCGGTTAAGCGTCCGAC-------TTCGGCTCAGGTCATGATCTCGCG-TTCGTGAGT-TCGAGCCCCGCGTCGGGCTC--TGTGCTGACAGCTCAGAGCCTGGAGCCTG-CTT??? Feliformia_sp._99534 GGGCACCTGGGGGGCT--GTTGGTTAAGTGCCCAACTCTTGGTTTTGGCTCAGATCATGATCTCATG-TTCGTGAGT-TCGAGCCCCATGTCAGGCTC--CATGCTGATGG-------TATAGAGCCTG-CTTGGG Feliformia_sp._180515 GGGCACCTGGGTGGCTCAGTCAGTTAAGCGTCCAACTCTTGATTTCAGCTCAAGTCATGATCTCACA-TTCATGAAT-TCAAGCCCCACATTGGGCTC--TGTGCTGACAT-------CTCAGACCCTG-CTTGGG Feliformia_sp._131713 GGGCTCCTGGGTGGCTCAGTCAGTTAAGCGTCCAACTCCTGATTTCAGCTCAGATCATGATCTCATT-TTTGTGAGA-TCAAGCCCCACATTGGGCTC--TGTACTGACAG-------CCA-GAGCCTG-CTTGGG Feliformia_sp._199572 GAGTATCTGGGGGGCTCAGTCGGTTAAGCATCAGGCTCTTGATTTCAGCTCAGATCATGATCTCATG-TT-GTGGGA-TCGAGCCCCATGTCAGGCTC--TGCACTGACAG-------CACGGAGCCTG-CTTGGG Cryptoprocta_ferox_131713 GGCCACCTGGGCGGCTCAGTCAGTTAAGCATCCGACTCCTGATTTTGGCTCAGGTCATGATCTCACT-TTTGTGAGA-TCAAGCCCCATGTTGGGCTC--TGTGCTGACAG-------TGCAGAGCCTG-CTT-GG Feliformia_sp._194731 GGGCACCTGGGGGGCTCGGTGGGTTAAGCGTCCAACT--GGATTTCAGCTCAGGTCATGATCTCACG-TTCATGGGA-TCGAGCCCCACAGCGGGCTC--TGTGCTGACCA-------TGCAGAGCCTG-CTTGGG Feliformia_sp._135256 GGGTACTTGGGTGGCTCGGTTGGTTAAGCACCTGACTCTTGATTTCTGCTCAGGTCATGATCTCTGG-TTCATGAGA-TCGAGCCCCACGTCAGGCTC--TGCACTGACAG-------CACAGAGTCTG-CTTGGG Feliformia_sp._95036 GGTTATCTGGGTGGCTCAGTTGGTTGAGCATCTGACTCTTGATTTCAGCTCAGGTCATGATCCCAGG-TT-ATGGGC-TCAAGCCTCACGTT-GGCTC--TGCACTGAG---------CATGGAGCCTG-CTTGTG Feliformia_sp._117885 GAGTACCTAGGTGGCTCAGTCAGGTAAGCGTCAGGCTCTTGATTTTGGCTCAGGTCATGATCTCACA-TTCATGAAA-TAGAGCCCCATGTTGGGCTC--CGTGCTGGG---------CACGGAGCCTG-CTTAAG Feliformia_sp._95892 GGGCACCTGGGGGGCTCAGTTGGTTAAACATAGGACTCTTGATTTCTGCTTAGGTCATGATCTCCTG-TTTGTGAGC-TAGAGCCCCAAGTCAGGCTC--TGCACTGACAG-------CAGGGAGCCTG-CTTGGG Feliformia_sp._217179 GGGCGCCTGGGTGGCTCAGTCAGTTAAGCATCTGACTCTTGATTTTGGCTTAGGTCATGATCTCACG-AT-GTGAGA-TAGAGCCCTATGTTAGGCTC--TGTGCTGAG---------CATGGAGCCTG-CTTAAG Feliformia_sp._134929 GGGGGCCTGAGTGACCCAGTTGGTTAAGCATCTGAATCTTGATTTCTGCTCAGATCATGATCTCCTG-TTCCTGAGA-TAGAGCCTTGAGTCAGGCTC--TGCACTGAGAG-------CATGGAGCTTA-CTTGGG Feliformia_sp._151787 GGGCGCCTGGGTGGCTCAGCCGGTGAAGCGTCCAACTCTTGATTTCAGCTCAGGTCACGATCTCACC-TTCGTGAGA-TCGAGCCCCACGTCA-GCTC--TGTGCTGGTGG-------CTTGGAGCCTG-CTTGGG Feliformia_sp._203536 GGGCACCTGGGTGGCTCAGTCGGTTGAGCATCTGACTCTTGATTTTGGCCCAGGTCATGATCCCAGG-TT-GTGGGA-TGGAGCCCCAT-GCCGGCTC--CATGCTGAG?--------TGTGGAGCCTG-CTTAAG Feliformia_sp._4743 GGGATCCAAGGTGTCTCAGTCAGTTAAGCGTCCAACTCTTGATTTCAGCTCAAGTCATGATCTCACG-TTCATGAGT-TTGGGCCCCGCATCA-GCTC--TGCGCTGACAG-------TGCAGAGCCTG-CTTGGG Feliformia_sp._213652 GGGCACCTGGGTGGCTCAGTCAGTTAAGCATCTGACTCTTGGTTTTGGCTCAGGTCATGACCTCACGCTTTGTGGGA-TCGATCCCCATGTCAGGCTC--TGCGCTGGCCG-------TGCAGAGCCTG-CTTGGG Feliformia_sp._99463 GGGCACCCGGGTGGCTCAATCAGTTAAGTATCTGACTCTTGGTTTCGGCTCAGGTCATGATCTCCCG-TTCGTGGGT-TCGAGCCCCATGTC-GGCTC--TGTGCTGATGG-------TGTGGAGCCTG-CTTGGG Feliformia_sp._212906 GGGCGCCTAGGTGGCTCAGTCAGTTGAGCATCTGACTCTTGATTTCGACTCAGGTCATGATCCCAGG-TC-CTGGGA-TCGAGCCCCATGTTGGGCTC--TGTGCTGAGTG---------TGAAGCCTA-CTTAAG Feliformia_sp._206155 GGGTGTGTGAGTGGCTCAGTTGGTTGAGCATCTGACTCTTGATTTCAGCTCAGGTCATGATCCCAGG-TT-GTGGGA-TTGAGCTGCACTTTGGGCTC--CATGCTGAGTG---------TGGAGCCTG-CTTAAG Feliformia_sp._145754 GGGCACCTGGGTGACTTAGTTGGTTGAGCATCTGACTCTTGATTTCAGCTCAGGTTGTGATCCCAGG-TT-GTGGGA-TCGAGCCCCATATCGGGCTG--CTTACTGTGTG---------TGGAGGCTG-CTTAAG Feliformia_sp._145617 GAGCACCTGGGTGGCTCAGTCAGTTGAGCACCTGACTCTTGATTTTGGCTCAGGTCATGATCCCAGG-TT-GTGGGA-TCGAGCCCCATGTTGGGCTC--TGCACTGAGTG---------TGGAGCCTG-CTTAAG Feliformia_sp._150913 CGCCTCCTCGGTGGCTCAGTTGGTTGAGCCTCCACCTCTTGATTTCGGCTCAGGTCATGATCCCAGG-TT-GTGGGA-TCGAGCCCCATGTTGGGCTC--TGCGCTGAGTG---------TGGAACCTG-CTTAAG Feliformia_sp._106256 GGGCACCTGGATGGCTTGGTTGGTTGAGCATCTGACTCTTGATTTCTGCTCAGGTCATGATCCCAGG-TT-GTGG-A-TCGAGCCCTGCGTCGGGCTC--CATGCTGAGTG---------TGGAACCTG-CTTAAG Feliformia_sp._164336 GGGCATCTGGGCAGCTCAGTCAGTTGAGCATCTGACT--TGATTTCAGCTCAGGTCATGATCCCAGA-T-CCTGAGA-TCGAGCCCCATGTCA-GCTC--TGTGCTGAGTG---------TGGAGGCTG-CTTGGG Feliformia_sp._174511 GGA?GTCTGGGTGGCTCATTTGGTTGAGCATCTGACTCTTGATTTCAGCTCAGGTCATGATCCCAGG-T-CATG-GA-TTGAGTCCCATGTTGGGCTC--CATGCTGGGTG---------TGGAGCCTG-CTTGAG Feliformia_sp._107176 GGGCACCTGGGTGGCTCAGTCGGTTGAGCATCCCACTCTTGATTTCAGCTCAGGTCATGATCCCAGG-T-CATGGGA-TCAAGCCCTGTGTT-GGCTC--CATGCTGAGTG---------TGGAGCCTG-CTTAAG Feliformia_sp._101187 GAGCACCTGGGTGGCTCAGTTGGTTGAGCATCTGATTCTTGATTT-GGCTCAGGTCATGATCCCAGG-TCATTGG-A-TCAAGCCCCACATT-GGCTC--TGAGCTGAGCG---------TGGAGCCTG-CTTATG Feliformia_sp._136949 GGGCACYTGGGTGGCTCAGTCGGTTGAGCATCYGACTCTTGATTTCAGCTCAGGTCATGATCCCAGG-T-CATGGGA-TTGAGCCCCGCATCGGACTC--CATGCTGAGTG---------TGGAGCCTG-CTTGAG Feliformia_sp._179189 GGGCGCCTGGGTGACTCAATCAATTGAGCATCCAACTCTTGATTTCTGCTCAGGTCATGATCCCAGG-T-CATGGGA-CCTAGCCCTGTGTCAGGCTT--CATGCTGAGTG---------TGGAGCCTG-CTTAAG ; END; BEGIN TREES; Title Subfamily_Short_Names; LINK Taxa = Taxa; TRANSLATE 1 Pardofelis_sp._212075, 2 Prionailurus_sp._150853, 3 Lynx_rufus_133135, 4 Prionailurus_sp._130416, 5 Otocolobus_manul_105890, 6 Caracal_aurata_105890, 7 Otocolobus_manul_213566, 8 Prionailurus_vivverinus_125972, 9 Pardofelis_marmorata_133135, 10 Prionailurus_sp._150951, 11 Leopardus_pardalis_150951, 12 Prionailurus_benegalensis_212075, 13 Panthera_onca_5313, 14 Prionailurus_benegalensis_161275, 15 Panthera_onca_chB1.32M, 16 Otocolobus_manul_139216, 17 Felis_silverstris_silvestris_203464, 18 Pardofelis_badia_146417, 19 Pardofelis_marmorata_216524, 20 Otocolobus_manul_215122, 21 Pardofelis_badia_150162, 22 Pardofelis_marmorata_216162, 23 Felis_sp._105890, 24 Prionailurus_sp._ch1.181M, 25 Pardofelis_marmorata_150853, 26 Prionailurus_sp._134463, 27 Felis_nigripes_150951, 28 Lynx_sp._154966, 29 Caracal_caracal_133135, 30 Neofelis_neofelis_212733, 31 Prionailurus_sp._chA1.248M, 32 Leopardus_geoffroyi_chD4.80M, 33 Prionailurus_planiceps_212075, 34 Lynx_canadensis_73133, 35 Otocolobus_manul_212331, 36 Felis_nigripes_212075, 37 Leopardus_sp._133135, 38 Leopardus_tigrinus_213798, 39 Lynx_canadensis_106256, 40 Caracal_serval_101187, 41 Puma_yagouaroundi_101187, 42 Lynx_lynx_204133, 43 Prionailurus_vivverinus_164336, 44 Felis_nigripes_99643, 45 Pardofelis_marmorata_106256, 46 Panthera_unica_134292, 47 Pardofelis_marmorata_145617, 48 Lynx_pardinus_106256, 49 SINEC_Fc_R, 50 Otocolobus_manul_73133, 51 Felidae_sp._203464_, 52 Lynx_sp._139216_, 53 Panthera_sp._782, 54 Pantherinae_sp._chA1.248M, 55 Felidae_sp._214534, 56 Leopardus_colocolo_122236, 57 Felidae_sp._122236, 58 Priondontidae_115304, 59 Neofelis_neofelis_199572, 60 SINEC_Fc2, 61 Feliformia_sp._99534, 62 Feliformia_sp._180515, 63 Feliformia_sp._131713, 64 Feliformia_sp._199572, 65 Cryptoprocta_ferox_131713, 66 Feliformia_sp._194731, 67 Feliformia_sp._135256, 68 Feliformia_sp._95036, 69 Feliformia_sp._117885, 70 Feliformia_sp._95892, 71 Feliformia_sp._217179, 72 Feliformia_sp._134929, 73 Feliformia_sp._151787, 74 Feliformia_sp._203536, 75 Feliformia_sp._4743, 76 Feliformia_sp._213652, 77 Feliformia_sp._99463, 78 Feliformia_sp._212906, 79 Feliformia_sp._206155, 80 Feliformia_sp._145754, 81 Feliformia_sp._145617, 82 Feliformia_sp._150913, 83 Feliformia_sp._106256, 84 Feliformia_sp._164336, 85 Feliformia_sp._174511, 86 Feliformia_sp._107176, 87 Feliformia_sp._101187, 88 Feliformia_sp._136949, 89 Feliformia_sp._179189; TREE tree_1 = ((2:0.097048,4:0.027509,6:0.031975,7:0.028833,8:0.022447,9:0.026839,10:0.013851,11:0.023809,12:0.014382,14:0.014415,16:0.002415,17:0.00561,18:0.002945,19:0.003438,20:0.003575,21:0.002288,22:0.002406,24:0.013325,25:0.010635,26:0.015631,27:0.001862,28:0.00832,29:0.004397,30:2.64E-4,31:0.007411,32:0.002055,33:6.88E-4,34:0.003197,35:0.00237,36:0.0,37:0.0,38:0.0,39:0.005923,40:0.023463,41:0.0,42:0.005238,43:0.020927,44:0.005154,45:0.021683,46:0.017809,47:0.010026,48:0.006282,49:0.0,50:0.00916,52:0.016417,59:0.008277,(1:0.081797,3:0.049038):0.027424,(5:0.040256,13:0.008316):0.001614,(15:0.016039,23:0.008101):0.002038):0.00947,(51:0.138478,53:0.04949,56:0.017222,60:0.008058,(57:0.01642,58:0.025121):0.019942,(54:0.007554,55:0.030253):0.014257,(73:0.066247,(61:0.099915,62:0.061633,63:0.061302,64:0.064457,66:0.080823,67:0.078919,68:0.060226,69:0.11521,70:0.071717,71:0.048446,72:0.127436,74:0.04975,75:0.095209,77:0.052941,78:0.056121,80:0.08988,81:0.037661,82:0.082332,83:0.050837,84:0.075661,87:0.062244,88:0.026085,(79:0.063816,85:0.045123):0.027507,(65:0.055743,76:0.070039):0.031437,(86:0.016394,89:0.081555):0.025593):0.022674):0.035064):0.009469); END;