#NEXUS [written Tue May 17 18:19:54 BRT 2016 by Mesquite version 3.04 (build 725) at Gustavo-PC/192.168.1.103] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS Acidovorax_citrulli_AAC_213_49 Acidovorax_citrulli_AAC_213_41 Acidovorax_citrulli_AAC_213_42 Acidovorax_citrulli_AAC_213_44 Acidovorax_citrulli_AAC_213_45 Acidovorax_citrulli_AAC_213_47 Acidovorax_citrulli_AAC_213_48 Acidovorax_citrulli_AC_05 Acidovorax_citrulli_AAC_213_61 Acidovorax_citrulli_AAC_213_60 Acidovorax_citrulli_AAC_213_59 Acidovorax_citrulli_AAC_213_58 Acidovorax_citrulli_AAC_213_55 Acidovorax_citrulli_AAC_213_54 Acidovorax_citrulli_AAC_213_53 Acidovorax_citrulli_AAC_213_52 Acidovorax_citrulli_AAC_213_51 Acidovorax_citrulli_AAC_213_50 Acidovorax_citrulli_AC_50 Acidovorax_avenae_NC_015138 ; END; BEGIN CHARACTERS; TITLE Matrix_pilT.nex; DIMENSIONS NCHAR=899; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Acidovorax_citrulli_AAC_213_49 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGATCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_41 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGATCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_42 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGATCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_44 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGATCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_45 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGATCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_47 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGATCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_48 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGATCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AC_05 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_61 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_60 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_59 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_58 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_55 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_54 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_53 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_52 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_51 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AAC_213_50 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_citrulli_AC_50 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCCCTCGACCACAAGACCGTGCACGCCATGGTGTACGACATCATGAGCGACGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAGCTCAACGCCCCGCGCATCTTCGCCGACCTTGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACCGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAATACGGGCACATCCTGACGGTGGAAGACCCGATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAAATGCGCGACCTCGAAACCATCCGCCTGGCCATGACCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACTTCCAGCGCGGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC Acidovorax_avenae_NC_015138 TCCGCGTGCATGGCGACGTGCGCCGCATCAACGTCGATGCGCTCGACCACAAGACGGTGCATGCCATGGTGTACGACATCATGAGCGATGCCCAGCGCAAGGTGTACGAGGAGTTCCTGGAAGTGGACTTCTCGTTCGAGATCGAGGGCCTGGCGCGCTTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCGGCCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCACGCTCGAGCAACTCAATGCCCCGCGCATCTTCGCCGACCTCGCCCTCAAGCCGCGCGGCCTCGTGCTCGTCACCGGCCCCACGGGCTCGGGCAAGTCCACCACGCTCGCGGCCATGGTGAACCACCTCAACGAGACCGAGTACGGGCACATCCTCACGGTGGAAGACCCGATCGAGTTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCGCCGCGCTGAAATCCGCGCTGCGCGAAGACCCGGACGCCATCCTCGTGGGTGAAATGCGCGACCTCGAGACCATCCGCCTGGCCATGACGGCCGCCGAGACGGGCCACCTCGTGTTCGGCACCCTGCACACCTCCAGCGCCGCCAAGACCATCGACCGGATCATCGACGTGTTCCCCGCCGAGGAAAAGGAGATGGTGCGCGCCATGCTGTCCGAATCGCTGCAGGCCGTGATCTCCCAGACGCTGTGCAAGACCAAGGACGGCCAGGGCCGCGTGGCGGCGCACGAGATCATGCTGGGCACCAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAACCTCACCGACCTCGTGCGGCGC ; END; BEGIN TREES; Title Tree_pilT.nex; LINK Taxa = Taxa; TRANSLATE [0] n0 Acidovorax_citrulli_AAC_213_49, [1] n1 Acidovorax_citrulli_AAC_213_41, [2] n2 Acidovorax_citrulli_AAC_213_42, [3] n3 Acidovorax_citrulli_AAC_213_44, [4] n4 Acidovorax_citrulli_AAC_213_45, [5] n5 Acidovorax_citrulli_AAC_213_47, [6] n6 Acidovorax_citrulli_AAC_213_48, [7] n7 Acidovorax_citrulli_AC_05, [8] n8 Acidovorax_citrulli_AAC_213_61, [9] n9 Acidovorax_citrulli_AAC_213_60, [10] n10 Acidovorax_citrulli_AAC_213_59, [11] n11 Acidovorax_citrulli_AAC_213_58, [12] n12 Acidovorax_citrulli_AAC_213_55, [13] n13 Acidovorax_citrulli_AAC_213_54, [14] n14 Acidovorax_citrulli_AAC_213_53, [15] n15 Acidovorax_citrulli_AAC_213_52, [16] n16 Acidovorax_citrulli_AAC_213_51, [17] n17 Acidovorax_citrulli_AAC_213_50, [18] n18 Acidovorax_citrulli_AC_50, [19] n19 Acidovorax_avenae_NC_015138; TREE 'tree 1+' = (((((((((((((((((((n0:0.0,n1:0.0):0.0,n2:0.0):0.0,n3:0.0):0.0,n4:0.0):0.0,n5:0.0):0.0,n6:0.0):1,n7:0.0):0.0,n8:0.0):0.0,n9:0.0):0.0,n10:0.0):0.0,n11:0.0):0.0,n12:0.0):0.0,n13:0.0):0.0,n14:0.0):0.0,n15:0.0):0.0,n16:0.0):0.0,n17:0.0):0.0,n18:0.0):9.5,n19:10.5); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = Matrix_pilT.nex) = unord: 1 - 899; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = Matrix_pilT.nex) = universal: 1 - 899; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = Matrix_pilT.nex) = 'Jukes-Cantor': 1 - 899; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1463519994545; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3178852636708703890; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5778228786863576985; mqVersion 304; checksumv 0 3 14863454 null getNumChars 899 numChars 899 getNumTaxa 20 numTaxa 20 short true bits 15 states 15 sumSquaresStatesOnly 279217.0 sumSquares 279217.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 233; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3178852636708703890 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3178852636708703890; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 467 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3178852636708703890 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 4668.1463519564834.2682315824086250187; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 467 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((((((((((((((((((1:0.0,2:0.0):0.0,3:0.0):0.0,4:0.0):0.0,5:0.0):0.0,6:0.0):0.0,7:0.0):1,8:0.0):0.0,9:0.0):0.0,10:0.0):0.0,11:0.0):0.0,12:0.0):0.0,13:0.0):0.0,14:0.0):0.0,15:0.0):0.0,16:0.0):0.0,17:0.0):0.0,18:0.0):0.0,19:0.0):9.5,20:10.5);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5778228786863576985 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 467 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;