NEXUS
[File created by TreeBASE:  7/26/07  21:02:17]
[Matrix accession#: M1461]

BEGIN TAXA;
	TITLE M1461;
	DIMENSIONS  NTAX=16;
	TAXLABELS
		Alternaria_turkisafria	Alternaria_toxicogenica	Alternaria_solani_8	Alternaria_solani_5	Alternaria_longipes	Alternaria_limicola_2	Alternaria_limicola_1	Alternaria_infectoria	Alternaria_gaisen	Alternaria_conjuncta	Alternaria_citri_UC4s	Alternaria_citri	Alternaria_brassicicola	Alternaria_arbusti	Alternaria_alternata_2	Alternaria_alternata_1
	;
END;

BEGIN CHARACTERS;
	TITLE M1461;
	DIMENSIONS NCHAR=374;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Alternaria_turkisafria        GTCAAACGTCCCTG-TGGCGCGTC-CTGCCCCGCGCCTAGA--TATCATT-CAGGGACG----AGCGCGAACAACAGAGAACAACAGCTAACAACTCTTCTGTGCAACAGGTTCACCTCCAGACCGGTCAATGCGTAAGCTCT--TCTCTCCTC-----AAACATCCAGACGACAGCTAATAGTGTTTTC-AGGGTAACCAAATCGGTGCTGCCTTTTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAACGGCACTTCAGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCACTCGATATTCCATACGGCAGATAAAAGGTCAATACTGATCTATAGCAGGC
		Alternaria_toxicogenica       GTCAAACGTCCCTG-TGGCGCGTC-CTGCCCCGCGCCTAGA--TATCATT-CAGGGACA----AGCGCGAACAACAGAGAACAACAGCTAACAACTCTTCTGTGCAACAGGTTCACCTCCAGACCGGTCAATGCGTAAGCTCT--TCTCTCCTC-----AAACATCCAGACGACAGCTAATAGTGTTTTC-AGGGTAACCAAATCGGTGCTGCCTTTTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAACGGCACTTCAGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCACTCGATATTCCATACGGCAGATAAAAGGCCAATACTGATCTATAGCAGGC
		Alternaria_solani_8           TGCCCACGTCCCTGGTGGCGCGTC-GTGCCCCGCGCCGAGA--TATTATT-CAGGGACA----CGCGCGAACAAGGGAGAACAACAGCTAACACGTCTTGCTTGCAACAGGTTCACCTTCAGACCGGTCAATGCGTAAGTCCTCCTCTCGTCCTCTCC-AGCCGCCCAGACGACAGCTAACAGTATTTTC-AGGGTAACCAAATTGGTGCTGCCTTCTGGCAGACCATTTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAACGGCACTTCAGACCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCACCCGATATTCGATACGGCAGATAAAAGACCAATACTGATCTGTAGCAGGC
		Alternaria_solani_5           TGCCCACGTCCCTGGTGGCGCGTC-GTGCCCCGCGCCGAGA--TATTATT-CAGGGACA----CGCGCGAACAAGGGAGAACAACAGCTAACACGTCTTGCTTGCAACAGGTTCACCTTCAGACCGGTCAACGCGTAAGTTGTCCTCTCATCTCCTCC-AGCCGCCCAGACGACAGCTAACAGTATTTTC-AGGGTAACCAAATTGGTGCTGCCTTCTGGCAGACCATTTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAACGGCACTTCAGACCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCACCCGATATTGGATACGGCAGATAAAAGACCAATACTGATCTGTAGCAGGC
		Alternaria_longipes           GTCAAACGTCCCTG-TGGCGCGTC-CTGCCCCGCGCCTAGA--TATCATT-CAGGGACA----AGCGCGAACAACAGAGGACGACAGCTAACAACTCTTCTGTGCAACAGGTTCACCTCCAGACCGGTCAATGCGTAAGCTCT--TCTCTCCTC-----AAACATCCAGACGACAGCTAATAGTGTTTTC-AGGGTAACCAAATCGGTGCTGCCTTTTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAACGGCACTTCAGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCACTCGATATTCCATACGGCAGATAAGAGGCCAATACTGATCTATAGCAGGC
		Alternaria_limicola_2         CTGCGGCGTCGCCGGTGGCGCGTC-GTGCCCCGCGCCCACA--TATCATT-CAGGGACA----CGCGCCCGCAAGGGACAACATCAGCTAACACGTCTTGCTTGCAACAGGTTCACCTTCAGACCGGCCAATGCGTAAGCTCTCCTCGCGTCCCCTCG-AGCCGCCCGGGCGACAGCTAACAGTGTTTTCCAGGGTAACCAAATTGGTGCTGCCTTCTGGCAGACCATTTCCGGCGAGCATGGTCTCGACGGCTCTGGTGTCTACAACGGCGCGTCAGACCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCGCCCGATACTCGGTACGGCAGATAAAAGACCAATACTGATCTACAGCAGGC
		Alternaria_limicola_1         CTGCGGCGTCGCCGGTGGCGCGTC-GTGCCCCGCGCCCACA--TATCATT-CAGGGACA----CGCGCCCGCAAGGGACAACATCAGCTAACACGTCTTGCTTGCAACAGGTTCACCTTCAGACCGGCCAATGCGTAAGCTCTCCTCGCGTCCCCTCG-AGCCGCCCGGGCGACAGCTAACAGTGTTTTCCAGGGTAACCAAATTGGTGCTGCCTTCTGGCAGACCATTTCCGGCGAGCATGGTCTCGACGGCTCTGGTGTCTACAACGGCACGTCAGACCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCGCCCGATACTCGGTACGGCAGATAAAAGACCAATACTGATCTACAGCAGGC
		Alternaria_infectoria         -TGCCGCCTAGTCG-TGGCGCGTCGCTGCCCCGCGCCGAGA------CTC--AGGGACA-----ACACAAAGAAC-------AACAGCTAACGACGTTTCTCTGCCACAGGTTCACCTTCAGACCGGTCAATGCGTAAGTTTTGATATCGCTCCT----CTGTGTACAGACGACAGCTAACAA---TCTCCAGGGTAACCAAATCGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCCGGTGTCTACAACGGCACCTCGGACCTGCAGCTCGAGCGCATGAATGTCTACTTCAACGAAGTGCGTCCCTCGATTACGCTTTTGGCAGATAAAAGACCAATACTGATCTACAGCAGGC
		Alternaria_gaisen             GTCAAACGTCCCTG-TGGCGCGTC-CTGCCCCGCGCCTAGA--TATCATT-CAGGGACA----AGCGCGAACAATAGAGAACAACAGCTAACAACTCTTCTGTGCAACAGGTTCACCTCCAGACCGGTCAATGCGTAAGCTCT--TCTCTCCTC-----AAACATCCAGACGACAGCTAATAGTGTTTTC-AGGGTAACCAAATCGGTGCTGCCTTTTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAACGGCACTTCAGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCACTCGATATTCCATACGGCAGATAAAAGGCCAATACTGATCTATAGCAGGC
		Alternaria_conjuncta          -TGCCGCCTAGTCG-TGGCGCGTCGCTGCCCCGCGCCGAGA------CTC--AGGGACA-----ACACAAAGAAC-------AACAGCTAACGACGATTCTCTGCAACAGGTGCACCTTCAGACCGGTCAATGCGTAAGTCTACATATCGCTCCT----CTGT--ACAGACGACAGCTAACA----CCCCCAGGGTAACCAAATCGGTGCCGCCTTCTGGCAGACCATTTCCGGCGAGCATGGCCTCGACGGCTCCGGTGTCTACAACGGCACCTCGGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAAGTGCGTCCCCCGATTACGCTTTTGGCAGATAAAAGACCAATACTGATCCACAGCAGGC
		Alternaria_citri_UC4s         GTCAAACGTCCCTG-TGGCGCGTC-CTGCCCCGCGCCTAGA--TATCATT-CAGGGACA----AGCGCGAACAAC--A--------GCTAACAACTCTTCTGTGCAACAGGTTCACCTCCAGACCGGTCAATGCGTAAGCTCT--TCTCTCCTC-----AAACATCCAGACGATAGCTAATAGTGTTTTC-AGGGTAACCAAATCGGTGCTGCCTTTTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAACGGCACTTCAGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCACTCGATATTCCATACGGCAGATAAAAGGCCAATACTGATCTATAGCAGGC
		Alternaria_citri              GTCAAACGTCCCTG-TGGCGCGTC-CTGCCCCGCGCCTAGA--TATCATT-CAGGGACA----AGCGCGAACAACAGAGAACAACAGCTAACAACTCTTCTGTGCAACAGGTTCACCTCCAGACCGGTCAATGCGTAAGCTCT--TCTCTCCTC-----AAACATCCAGACGACAGCTAATAGTGTTTTC-AGGGTAACCAAATCGGTGCTGCCTTTTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAACGGCACTTCAGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCACTCGATATGCCATACGGCAGATAAAAGGCCAATACTGATCTATAGCAGGC
		Alternaria_brassicicola       TTAAGAAGTCGCTG-TGGCGCGTCGCTGCCCCGCGCCTAGAAGTAGCATTTCAGGGACACACAAGCGCGAACAATAGAGAACAACAGCTAACGGCGTTTCT-TGCAACAGGTCCACCTCCAGACCGGTCAATGTGTAAGCTCTCGTCGCTCCTCTACATGAAAACGACAACAGCAACTAACAGC-CTCTC-AGGGTAACCAGATCGGTGCTGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCGGGTGTCTACAACGGCACTTCAGACCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCACTCGATACTCGATACGCCAGATAAAAGGCCAATACTGATCTATAGCAGGC
		Alternaria_arbusti            -TGCCGCCTAGTGG-TGGCGCGTCGCTGCCCCGCGCCGAGA------CTC--AGGGACA-----ACATAAAGAAC-------AACAGCTAACGACGTTTCT-TGCAACAGGTTCACCTTCAGACCGGTCAATGCGTAAGTTTTGATATCGCTCCT----CTGT--ACAGACGACAGCTAACAT---TGCCCAGGGTAACCAAATCGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCCGGTGTCTACAACGGCACCTCGGACCTGCAGCTCGAGCGCATGAATGTCTACTTCAACGAAGTGCGTCCCCCGATTACGCTTTTGGCAGATAAAAGACCAATACTGATCTACAGCAGGC
		Alternaria_alternata_2        GTCAAACGTCCCTG-TGGCGCGTC-CTGCCCCGCGCCTAGA--TATCATT-CAGGGACA----AGCGCGAACAACAGAGAACAACAGCTAACAACTCTTCTGTGCAACAGGTTCACCTCCAGACCGGTCAATGCGTAAGCTCT--TCACTCCTC-----AAACATCCAGACGACAGCTAATAGTGTTTTC-AGGGTAACCAAATCGGTGCTGCCTTTTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAACGGCACTTCAGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCACTCGATATTCCATACGGCAGATAAAAGGCCAATACTGATCTATAGCAGGC
		Alternaria_alternata_1        GTCAAACGTCCCTG-CGGCGCGTC-CTGCCCCGCGCCTAGA--TATCATT-CAGGGACA----AGCGCGAACAACAGAGAACAACAGCTAACAACTCTTCTGTGCAACAGGTTCACCTCCAGACCGGTCAATGCGTAAGCTCT--TCTCTCCTC-----AAACATCCAGACGACAGCTAATAGTGTTTTC-AGGGTAACCAAATCGGTGCTGCCTTTTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCCCTAGTGTCTACAACGGCACTTCAGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAAGTACGTCACTCGATATTCCATACGGCAGATAAAAGGCCAATACTGATCTATAGCAGGC
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 374 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;