NEXUS
[File created by TreeBASE:  7/26/07  21:02:17]
[Matrix accession#: M1464]

BEGIN TAXA;
	TITLE M1464;
	DIMENSIONS  NTAX=14;
	TAXLABELS
		Alternaria_turkisafria	Alternaria_toxicogenica	Alternaria_tangelonis_2	Alternaria_tangelonis_1	Alternaria_perangusta	Alternaria_mali	Alternaria_limoniasperae	Alternaria_gaisen	Alternaria_citri	Alternaria_citrarbusti	Alternaria_arborescens	Alternaria_alternata_4	Alternaria_alternata_2	Alternaria_alternata_1
	;
END;

BEGIN CHARACTERS;
	TITLE M1464;
	DIMENSIONS NCHAR=464;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Alternaria_turkisafria         GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGCCTGGCTGACGGTACTACTGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAATGGAAGGGTCCCCTTCTTGACATCCAAGGAAAGAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAACGGTGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCACCATCACCGGCATTGCCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATTGATGCGTCCGACGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAACCA
		Alternaria_toxicogenica        GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACTGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAGTGGAAGGGTCCTCTTCTTGACATCCAAGGAAAGAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAATGGTGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCACCATCACCGGCATTACCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATTGATGCGTCCGACGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAACCA
		Alternaria_tangelonis_2        GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACTGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAGTGGAAGGGTCCTCTTCTTGACATTGAAGGAAAGAAGATCACTGTCAAGGGCGCTGAGGGATCTGTTCTCAACGGCGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCTCCATCACCGGCATTACCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATTGATGCGTCCGACGGCGACAAGGATGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAACCA
		Alternaria_tangelonis_1        GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACTGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAGTGGAAGGGTCCTCTTCTTGACATTGAAGGAAAGAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAACGGCGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCTCCATCACCGGCATTACCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATTGATGCGTCCGACGGCGACAAGGATGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAACCA
		Alternaria_perangusta          GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACTGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAATGGAAGGGTCCCCTTCTTGACATCCAAGGAAAGAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAACGGTGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCACCATCACCGGCATTGCCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATTGATGCGTCCGACGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAACCA
		Alternaria_mali                GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACTGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAATGGAAGGGTCCCCTTCTTGACATCCAAGGAAAGAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAACGGTGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCACCATCACCGGCATTACCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATTGATGCGTCCGACGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAACCA
		Alternaria_limoniasperae       GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACTGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAATGGAAGGGTCCCCTTCTTGACATCCAAGGAAAGAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAACGGTGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCACCATCACCGGCATTACCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATTGATGCGTCCGACGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAATCA
		Alternaria_gaisen              GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACTGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAGTGGAAGGGTCCTCTTCTTGACATTCGAGGAAACAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAACGGAGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTTACCGACTCCTCCATCACCGGCATTACCATCAAGAACCCTCCTGTCCAAGTCGTTAGCATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATTGATGCGTCCGATGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATCGGCTCCAGCAACAACGTCATCATCGATGGCGCTAAGGTTTACAACCA
		Alternaria_citri               GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACCGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAGTGGAAGGGTCCTCTTCTTGACATCCAAGGAAAGAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAACGGTGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCACCATCACCGGCATTACCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATCGATGCGTCCGACGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAACCA
		Alternaria_citrarbusti         GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACTGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAGTGGAAGGGTCCTCTTCTTGACATCCAAGGAAAGAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAACGGTGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCACCATCACCGGCATTACCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATTGATGCGTCCGACGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAACCA
		Alternaria_arborescens         GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACCGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAGTGGAAGGGTCCTCTTCTTGACATCCAAGGAAAGAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAACGGTGATGGTGCTCGCTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCACCATCACCGGCATTACCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATCGATGCGTCCGACGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAACCA
		Alternaria_alternata_4         GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACCGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCGGAGTGGAAGGGTCCTCTTCTTGACATCCAAGGAAAGAAGATCACTGTCAAGGGCGCTGAGGGATCTGTTCTCAACGGTGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACCAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCACCATCACCGGCATTACCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATCGATGCGTCCGACGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAACCA
		Alternaria_alternata_2         GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACTGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCAGAGTGGAAGGGTCCTCTTCTTGACATCCAAGGAAAGAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAACGGTGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACTAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCACCATCACCGGCATTACCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATTGATGCGTCTGACGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGATGGCGCTAAGGTTTACAACCA
		Alternaria_alternata_1         GTTCTTTCCGACGTTGCCGTCCCTTCAGGCACAACTTTGGACCTCTCTAGTCTGGCTGACGGTACTACTGTCATCTTCGAGGGTACCACCACCTGGGGCTACTCAGAGTGGAAGGGTCCTCTTCTTGACATCCAAGGAAAGAAGATCACTGTCAAGGGCGCCGAGGGATCTGTTCTCAACGGTGATGGTGCTCGTTGGTGGGACGGTAAGGGTGGAAATGGTGGAAAGACTAAGCCCAAGTTCTTCTCCGCTCACAAACTGACCGACTCCACCATCACCGGCATTACCATCAAGAACCCTCCCGTCCAAGTCGTTAGTATCAACGGCTGCGATGGTCTTACCATTACAGACATGACTATTGATGCGTCTGACGGCGACAAGGACGAGCAGGGCCACAACACAGATGGTTTCGATATTGGCTCCAGCAACAACGTCATCATTGGTGGCGCTAAGGTTTACAACCA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 464 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;