NEXUS
[File created by TreeBASE:  7/26/07  21:02:34]
[Matrix accession#: M1496]

BEGIN TAXA;
	TITLE M1496;
	DIMENSIONS  NTAX=11;
	TAXLABELS
		Methanosarcina_mazei	Methanococcus_jannaschii	Methanobacterium_thermoautotrophicum	Pyrococcus_abyssii	Pyrococcus_horikoshii	Pyrococcus_furiosus	Sulfolobus_solfataricus	Pyrobaculum_aerophilum	Aeropyrum_pernix	Haloferax_volcanii	Halobacterium_species
	;
END;

BEGIN CHARACTERS;
	TITLE M1496;
	DIMENSIONS NCHAR=251;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = -  ;
	MATRIX
		Methanosarcina_mazei                       ENMIGAVQIPLGVAGLLKVNGEEYYIPLATTEGALVASVNRGCSVIANVRVFEDEMTRAPVFFYDWVEQMKQAAEKTTRFLLSVKPFVYLRFSYDTKDAMGMNMVTIATDAVMHLIAHPVTLSGNMTVVAEVTIPQEIVKCTPESMFEVNYSSARAGAMFAANIIAAVYLACGQDAAHVVEITSMEIHCSVTLPLPVGTVGGGGLGTQRDCLNILGVSRKIVASAVLAGEISLIGAQAAGHLARAHAQLGR
		Methanococcus_jannaschii                   ENMIGAIQIPLGFAGPLKINGEEFYIPLATTEGALVASVNRGCSIIATVRVIDDKMTRAPCLVRDWIERIKEVAESTTRHLIKIEPLIYPRFVFKTGDAMGMNMVTIATEKACNFIVKTVAVSGNASIVAEVFLTEKEVNTTSQAIAEVNRLSAISNSMFYANIIGAIFLATGQDEAHIVEITMAELYFSVTLPVPIGTVGGGRVETQKECLEMLGCALKIVGAAVLAGELSLLGALAAGHLGKAHQELGR
		Methanobacterium_thermoautotrophicum       ENPIGVVQIPLGVAGPLRVRGEEYYVPLATSEGALVASVNRGCSVIATVRVTGDSMTRAPVILREWIDALREEAESTTRHLVKIDPIVYPRFVYTTGDSMGMNMVTIATERALELLAHVIALSGNLSITAEITVPGEMVETTPEAVVEVNTASAAAGSMFYANIIGAIFLATGQDEAHIVEVTIAELYFAVNLPVPLATVGGGGLETASECLDIMGVVHAIVGGAVLAGELSLMGALAAGHLARAHSELGR
		Pyrococcus_abyssii                         ENMIGVVQIPMGVAGPLKINGEEFYIPLATTEGALVASVNRGCSALVVTTILDDKMTRAPLIVAEWVNYLQEAVAKVTRHLRDVKPFIYLRFEFETGDAMGMNMVTIASEEIMKVIVRYLALSGNLTVVAEAIVPREIVETTPELIAEVNYFSAQAGSYFFGNIVGAIFLATGQDEAQITEITIAELYISITMPLEIGTVGGGRVPTQREALSIMGVAKKIVAGAVLAGELSLLAAIAAKHLARAHKMLGR
		Pyrococcus_horikoshii                      ENMIGVVQIPMGVAGPLKINGEEFYIPLATTEGALVASVNRGCSALVVTTLIDDKMTRAPLIVAKWVDYLQEAVSKVTRHLRGVKPFIYLRFEFETGDAMGMNMVTIASEEIMKVIVRYLALSGNLTVIAEAVVPRKIVETTPELIAEVNYFSAQAGSYFFANIVGAIFLATGQDEAQITEITIAELYISITMPLEIGTVGGGRVPSQREALEIMGVAKKIVAGAVLAGELSLLAAIAAKHLARAHKMLGR
		Pyrococcus_furiosus                        ENMIGVVQIPMGIAGPLKINGEEFYIPLATTEGALVASVNRGCSALVYTTLIDDKMTRAPLLVAEWVDYLQEAVSKVTRHLRGVKPFIYLRFEFETGDAMGMNMVTIASEEIMKVIVKYLALSGNLTIIAEAVVPREIVKTTPELIAEVNYLSAQAGSYFFANIVGAIFLATGQDEAQITEITLAELYISITMPLEIGTVGGGRVPPQREALEIMGVAKKIVAGAVLAGELSLLAAIAAKHLARAHKMLGR
		Sulfolobus_solfataricus                    ENVIGAIQIPLGIVGPIRVNGDDFYVPMATTEGALIASVNRGIKAVVRAKVLKDEMTRAPVFFLKFIEKIRNIANSTSHHLKSITPFVWLRFSFETGDAMGMNMVTIAVEKVCEFIADCLAVSGNMTVVAEALIKKDVIRSNAQLIHDINLRTARAGSLFFANIVTAIFIATGQDVAQIVEYTWTELYISVTLPLEVGTVGGGRLPTQKEALSIMGVAKKIIASTVLSGELNLLAALSNKELGKAHAKLGR
		Pyrobaculum_aerophilum                     ENVIGAVQIPVGVAGPLLVRGDYFYVPLATTEGALVASVNRGAKFVARVKVLKDGMARAPLFLVEWVEELKKVAESTTRFLKDIQHFIWLRLVFSTGDAMGMNMVTIASEAVAKFIAKLIALSGNMTVVAEAVIKKEILEITPEDVHNVNVRSALAHSYFFANIIAAIFIATGQDVAQVVEITSTELYISVFLPLEVGTVGGGGLPTQREALELLGVALKIIAAAVLAGELNLLIALARNELASAHKKLGR
		Aeropyrum_pernix                           ENPIGAVQVPVGVAGPLRINGDDFYIPLATTEGALVASVNRGAKAIARAKVIKDGMTRAPLLLAMWVEDLRSVVAGVTRHLQHIYPYIWLRLSFSTGDAMGMNMVTISSDRICRYIAKCIALSGNMYVVAEAVIKGEVVKTTPQNINLVNVTSAAAGSHFFANIIAAIFIATGQDAAQVVEYTWTELYISVTLPLEVGTVGGGRLPTQRELLALLGVALKIIASAVLAGELNLLSAIAAGQLARAHELLGR
		Haloferax_volcanii                         ENMVGSIQVPMGVAGPVSVDGGEKYLPLATTEGALLASVNRGCSVIATARVLKSGMTRAPVFLVSWTAALKEAAEETTNHLLDVTPYVYLRFRYDTKDAMGMNMATIATEAVCGVVASLVALSGNLSVTADVRIPREVVETTPERGRELNTRSAKAASLFVANVVAAMFLATGQDEAQVVEITTAELYVSVSIALEVGTVGGGKLPTQSEGLDILGVADACIAVGSLAGELSLLSALASRHLSSAHAELGR
		Halobacterium_species                      ENLTGGAQLPLGVAGPVALSGGEYYLPMATTEGALVASVNRGCSAIANARVTKTGMTRAPVFVAQWADALAAAAESTTSHLTDVTPYVYLRFRYDTKDAMGMNMATIATEAASELVAELVAVSGNLTVTADVTIPQDVVETTPAAIEEANTRSAKAGSLFAANVVAAVFLATGQDAAQVVEITTVELYASVNLALEVGTVGGGTLPTQREALDVLGVADAIIAVGALAGEINLLAALASRRLSAAHADLGR
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;