NEXUS
[File created by TreeBASE:  7/26/07  21:02:34]
[Matrix accession#: M1501]

BEGIN TAXA;
	TITLE M1501;
	DIMENSIONS  NTAX=17;
	TAXLABELS
		Phycomyces_blakesleeanus	Aspergillus_terreus_1	Candida_utilis	Saccharomyces_cerervisiae_1	Schizosaccharomyces_pombe_1	Gibberella_fujikuroi	Strongylocentrotus_purpuratus	Blattella_germanica	Dendroctonus_jeffreyi	Ips_paraconfusus	Xenopus_laevis	Oryctolagus_cuniculus	Rattus_norvegicus	Cricetulus_griseus	Agrotis_ipsilon	Drosophila_melanogaster	Homo_sapiens
	;
END;

BEGIN CHARACTERS;
	TITLE M1501;
	DIMENSIONS NCHAR=251;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = -  ;
	MATRIX
		Phycomyces_blakesleeanus            ENVIGYMPIPVGVAGPMNIDGDLIHIPMATTEGCLVASTARGCKAIASTIVIADGMTRGPCVCKLWIDIVTNAFNSTSRFLRKLKIALFIRFSTTTGDAMGMNMISKGCEKALSIIMQIISLSGNYSVVTEAVIPGAIVETTVAALVELNISSAMAGSVFAANILTAIYLATGQDPAQNVEITLMKLHISCTMPIEVGTIGGGILPPQQSMLDMLGVAQRIICAAVMAGELSLCAALAAGHLVKAHMAHNR
		Aspergillus_terreus_1               ENVVGYLPLPLGVAGPMVIDGQALFIPMATTEGVLVASASRGCKAIATTMLKGDGMTRGPCLAQRWVEVLAAAFNATSRFLQTLTVAQYIRFRTTTGDAMGMNMISKGVEKALEAMMHTVTLSGNFSVIAEATIPAETVRTDVDALVELNTASAMAGSLFASNLVQAVFLATGQDPAQNVEITTMKLHIAVSMPMEVGTIGGGILEAQGAMLDLLGVARRIVAAAVLAGELSTCAALAAGHLVNAHMQHNR
		Candida_utilis                      ENVIGYMPLPVGVAGPLIIDGKPYHIPMATTEGCLVASAMRGCKAIVTTVLTKDGMTRGPCVCKLWLEEMKKAFNSTSRFLQHLQTALFIRFRTVTGDAMGMNMISKGVEYALKQMMMVVSVSGNYSVVAEASIPKDAVVSSVKAVVDVNVNSAMAGSVFAANMVTAVYLALGQDPAQNVEITLMTLKVSVSMPIEVGTIGGGILDPQGSMLELLGVARQIVASIVLSGELSLVSALAAGHLVQSHMQHNR
		Saccharomyces_cerervisiae_1         ENVIGYMPIPVGVIGPLIIDGTSYHIPMATTEGCLVASAMRGCKAIATTVLTKDGMTRGPVVCKIWLNSIKKAFNSTSRFLQHIQTCLFMRFRTTTGDAMGMNMISKGVEYSLKQMMEVVSVSGNYSVVAEATIPGDVVKSDVSALVELNISSAMAGSVFAANLVTALFLALGQDPAQNVEITLMKLRISVSMPIEVGTIGGGVLEPQGAMLDLLGVARQIIACAVLAGELSLCSALAAGHLVQSHMTHNR
		Schizosaccharomyces_pombe_1         ENVIGYMPLPLGVAGPLIIDGKPFYIPMATTEGALVASTMRGCKAIAVTVLTRDQMSRGPCVAKIWLEVMKKAFNSTSRFLQHIKTALFIRFCTSTGDAMGMNMISKGVEHALVVMMQVISVSGNYSVIAEAIIPGDAVKTTVEDLVKLNVDSAMAGSVFAANIVTAVYLATGQDPAQNVEITLMDLQLSVSMPIEVGTIGGGVLEPQGAMLDLLGVSRQVVAAAVMAGELSLCSALASGHLVKSHIGLNR
		Gibberella_fujikuroi                ENVIGYMPLPVGVAGPLVIDGQSYFIPMATTEGVLVASASRGCKAIAITVLTADGMTRGPCVAKLWLDMMKKAFNSTSRFLQSMKTALYIRFKTTTGDAMGMNMISKGVEHALSVMMQIISVSGNYGVVAEAIIPGEVVRSDVDSLVELNVASAMAGSVFAANIVAAIFLATGQDPAQVVEITIMKLQISVSMPLEVGTLGGGILEPQGAMLDILGVARRIIGAAVLAGELSLCSALAAGHLVRAHMQHNR
		Strongylocentrotus_purpuratus       ENVIGYMPVPVGVAGPLLLDGQEFQVPMATTEGCLVASTNRGCRALIHSVLIGDGMTRGPLVIKQWLAAIKERFESTSRFLKSIQTALFLRFKALTGDAMGMNMISKGTEQALHALIEIMSLSGNYSVVCEATVPAHIVQTSASALVDLNIHSAMAGSIFAANIVTAIYIATGQDAAQNIAMTLMELYLSCTMPIELGTVGGGVLPPQSACLQMMDVASQIVCATVMAGELSLMSALAAGHLVKSHMKHNR
		Blattella_germanica                 ENVIGYMPVPVGVAGPLNLDGRLVHVPLATTEGCLVASTNRGMRALVTSRIVADGMTRGPVVAMLWMEQIKKNFDSTSRFLSKIHIRVFIRFIATTGDAMGMNMLSKGTEVALAYVMEILSLSGNFSVVCEAIVPADIIKTSVQALMDVNITSAVAGSIFAANIVTAIFIATGQDPAQNVGMTLMELYVSCTMPIEIGTIGGGVLPPQAACLDMLGVANTIVCGTVLAGELSLMSALAAGHLVKSHMRHNR
		Dendroctonus_jeffreyi               ENVIGYMPIPVGYAGPLLLDGRELYIPMATTEGCLVASTNRGCRALVTSSVVADGMTRGPVVAMQWIKKIKEQFDSSSRFLQRLTLKIFIRFIATTGDAMGMNMLSKGTEYSLKLVMEILSLSGNFSVVCEAIVPAKIISTNVHALVDVNNISAVAGSIFAANIVTAIFLATGQDPAQNVSMTLMELYISCTMPIEIGTIGGGILPAQSACLDILGVACQIVCGTVLAGELSLMSALTAGHLVKSHLRHNR
		Ips_paraconfusus                    ENVIGYMPIPVGYAGPLVLDGKEIYVPMATTEGCLVASTNRGCRALVTSRIVADGMTRGPVVAMQWIDGIKEQFDSSSRFLQRVTMKIFIRFVATTGDAMGMNMLSKGTEYSLKFVMEILSLSGNFSVVCEAIVPAKIVATNVHALVDVNNSSAVAGSIFAANIVTAIFLATGQDPAQNVGMTLMELYISCTMPIEIGTIGGGILPPQGTCLEMLGVASQIVGATVLAGELSLMSALAAGHLVRSHLRHNR
		Xenopus_laevis                      ENVIGYMPIPVGVAGPLLLNNKEYQVPMATTEGCLVASTNRGCRAIAKSRVLADGMTRGPVVVKAWLKVIKDAFDSTSRFLGRLQNCVYIRFQSKTGDAMGMNMISKVTEQALARLLHVLAVSGNYSVVCEAIIPAKVVRSSTEALVEVNINSAMAGSIYAANIVTAIYIACGQDAAQNVGITIMELYISCTMPIEIGTVGGGNLAPQQACLQMLGVACQIVCSTVMAGELSLMAALAAGHLVKSHMVHNR
		Oryctolagus_cuniculus               ENVIGYMPIPVGVVGPLCLDGKEFQVPMATTEGCLVASTNRGCRAIASSRVLADGMTRGPVVVKAWLAVIKEAFDSTSRFLQKLHISMYIRFQSRTGDAMGMNMISKGTEKALSKLMQILAVSGNYTVVCEAVIPAKVVRTTTEAMIDVNINSAMAGSIYAANYVTAIYIACGQDAAQNVGITLMELYISCTMPIEIGTVGGGNLLPQQACLQMLGVARQIVCGTVMAGELSLMAALAAGHLVKSHMIHNR
		Rattus_norvegicus                   ENVIGYMPIPVGVAGPLCLDGKEYQVPMATTEGCLVASTNRGCRAIASSRVLADGMSRGPVVVKSWLAVVKEAFDSTSRFLQKLHVTLYIRLQSKTGDAMGMNMISKGTEKALLKLLQILAVSGNYTVVCEAVIPAKVVRTTTEAMVDVNINSAMAGSIYAANIVTAIYIACGQDAAQNVGITLMELYISCTMPIEIGTVGGGNLLPQQACLQMLGVARQIVCGTVMAGELSLMAALAAGHLVRSHMVHNR
		Cricetulus_griseus                  ENVIGYMPIPVGVAGPLCLDGKEYQVPMATTEGCLVASTNRGCRAIASSRVLADGMTRGPVVVKAWLAVIKDAFDSTSRFLQKLHVTMYIRFQSKTGDAMGMNMISKGTEKALLKLMQILAVSGNYTVVCEAVIPAKVVRTTTEAMIDVNINSAMAGSIYAANIVTAIYIACGQDAAQNVGITLMELYISCTMPIEIGTVGGGNLLPQQACLQMLGVARQIVCGTVMAGELSLMAALAAGHLVRSHMVHNR
		Agrotis_ipsilon                     ENVIGYVGVPVGYAGPLVVDGKPYMIPMATTEGALVASTNRGAKAIVTSVVEDVGMTRAPAICRQWIAVIKEAFDSTSRFLQEIHIGVYLRFRATTGDAMGMNMVSKGAENALKLLMEVISLSGNYRVVCETTITSDSLRTDAKTLARCNKISALAGSINAANMVTAIYIATGQDPAQNVTSTNMELYVTCTMPLEVGTVGGGILTGQGACLDILGVSARLICATVLAGELSLMAALVNSDLVKSHMRHNR
		Drosophila_melanogaster             ENVLGYVPIPVGYAGPLLLDGETYYVPMATTEGALVASTNRGCKALVRSVVEDVGMTRAPCVAKSWIRVVKTEFDSTSRFLKDCHIAMYIRFVAITGDAMGMNMVSKGAEMALRRIMQIISLSGNFRVVTECTISAATLRTDAKTLVECNKLSAMAGSINAANMVTAVFLATGQDPAQNVTSTAMELYMTCTMPLEVGTVGGGGLPGQSACLEMLGVAKKIVCATVMAGELSLMAALVNSDLVKSHMRHNR
		Homo_sapiens                        ENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIASSRVLADGMTRGPVVVKAWLAVIKEAFDSTSRFLQKLHTSIYIRFQSRSGDAMGMNMISKGTEKALSKLMQILAVSGNYSVVCEAVIPAKVVRTTTEAMIEVNINSAMAGSIYAANIVTAIYIACGQDAAQNVGITLMELYISCTMPIEIGTVGGGNLLPQQACLQMLGVARQIVCGTVMAGELSLMAALAAGHLVKSHMIHNR
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;