NEXUS
[File created by TreeBASE:  7/26/07  21:02:34]
[Matrix accession#: M1502]

BEGIN TAXA;
	TITLE M1502;
	DIMENSIONS  NTAX=13;
	TAXLABELS
		Giardia_lamblia	Trypanosoma_brucei	Leishmania_major	Schizosaccharomyces_pombe	Saccharomyces_cerevisiae	Candida_albicans	Arabidopsis_thaliana	Oryza_sativa	Dictyostelium_discoideum	Caenorhabditis_elegans	Drosophila_melanogaster	Mus_musculus	Homo_sapiens
	;
END;

BEGIN CHARACTERS;
	TITLE M1502;
	DIMENSIONS NCHAR=269;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = -  ;
	MATRIX
		Giardia_lamblia                 STIFGHLAVLSGSVSMRERTRTALADTYNKTFSYAFLLDTNDEERQRGVTMDVELGDNYSVPHTVFLQDCPGHRDFVPSLIRAVSQPDAAVLVLDATREHLQLLMIFGVKHIMVAVNKLDDWNEGRFVEIFIPVSGIDGSHNDWVHTSLGEEIQIKGEKTSPTIILFDVCVVESGILQSDSIVHLPSMYLFQIVSIVDAVAYDTVTLYISVGDVYDCYVGSSRVEARVHKINAQINPLVGKSAYVRMTLIAVIVKEFSKSKLMGRMILR
		Trypanosoma_brucei              STTIGHLLLMLGKVTQSEVDRNKNARQMKKSFKFAWLLDQSEEERRRGVTIDAGSYCFETEHRRIHVLDAPGHKDYVLNMMSSAAQADAALLVVTATKEHLVILKMLGVGHIVVAVNKMDGYSQERYDFVFCPVSGIQGTNIPWYPSLVVRLDESRMMGTLLRLSVQDVCKVECGNVQGEKLLFVPADVKVQVRSIKPAFAGDTIVIDILPGARFTMVCHALTVQLQVLVLVSKMDKCIPKSTQAIIVFRKVALEPAEVCRSLGRFVLQ
		Leishmania_major                STTLGHLLLLLGRVSIQDVERNKADRTHHKSFKYAWLLDQCEEERRRGVTIDSGSFCFETEHRRVHILDAPGHKDFVLNMISSATQADAALLVVTATKSHLLVLKTLGVGSIVVAVNKMDAYSQERYDYVFCPISGMTGVNIPWYLSLIEMIDESRLVNSPLRLSLQDVAKVESGRLFGDMVHFVPSEVRVTIKSIKPAFAGETVEISILPGASFTIIVHALTVRVHVAALISKMDKCVPPAAQAMMLFRPVALEPATECRALGRFVLQ
		Schizosaccharomyces_pombe       STMLGRIMFELGEINSRSMQKLNEAANSGKSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSTREHAYLLRALGISEIVVSVNKLDSWSEDRFQEIFVPISAISGTNLKWYPTLLSALDPEKPYRKPLRLSIDDVGRVEAGNVQNQVLYDVSSQEDAYVKNVRNAVAGDTVTLQILSGSTLVLHLGRTVT-SVSLKIVTVNNRHIASRKRALVRISLFPLCLAEECPALGRFILR
		Saccharomyces_cerevisiae        STLMGRLLYDLNIVNQSQLRKLRESETMGKSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCTKEHMLLASSLGIHNLIIAMNKMDDWSQQRFEEIWVPISGFSGEGVQWYPNLMSTLEEGINKDDPFLFSVLEIGKLESGSIQGESLTIYPSEQSCIVDKIVGAIKGDFVTLKLLPGTPFILFIGVKEQPARIKRLISFIDRHLGSKQRAFVEIEWIPLLTAHENDRLGRVVLR
		Candida_albicans                STLMGRLLYDFGIIDAKTVNKLKEAEKAGKSFALAWVMDQTEEERSHGVTVDICATDFETDTTKFTAIDAPGHKDFVPQMISGVSQADFALLVVDSTKEHTILAKNFGLEKICVAVNKMDNWDEHRFDAIFIPISGLTGNNVKWYPTLAEYIERDSLASEPFFLSVHDVGKVSSGVISGETIVALPSGESLQVQSLVSAISGELAQIALLVGTPFVLFRNNTQVPARVSKIVEVVNLHLVSRQTAIVEIAALPVTKFDDNKVLGRIVIR
		Arabidopsis_thaliana            STLSGRLLHLLGRISQKQMHKYKEAKLQGKSFAYAWALDESAEERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDATREHARVLRGFGVEQVIVAINKMDGYSKERFDLIWIPLSAMENQNLSWYPCLLDAVDPDRDVSKPLLMPICDAGKLEAGAVRGSKVMVMPSGDQGTIRSLRDARAGDNVALAILLGSQLEFHVHHAKEAATVVKLVAMLDRCLTAKQSAMLEVSPVCVETFSESRALGRVFLR
		Oryza_sativa                    STLSGRLLHLLGRISKKDMHKNKEAKEKGKSFAYAWAMDESSEERERGVTMTVAVAYLETNKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDATKEHAQLIRSFGVEQLIVAVNKMDGYSKERFEFIWIPLSAVENQNLSWYFCLLDAIDPSRDVSKPLILPICDVGKLETGAIRGSKVLISPCGEVATVKSIRDARAGDNVAVSILIGYQVEFHIHHVKEAARVTKIVALLDRFLKSKQNAVVQVTPVCVEEFSKCRALGRAFLR
		Dictyostelium_discoideum        STTIFHILFKLGYVDKRTMSKFNESNRMGKSFHFAWVLDEQEEERERGVTMDVCVRYFETEHRRITLLDAPGHRDFIPNMISGTTQADVAILLINATKEHALLAKSLGIMELIVAVNKMDEWDQSRYDYIFIPISGFTGENLKWYPTLIECIDGERLLNKPFRMNISDVGKIEAGLLGGDKILISPGNDICTIKSIRNAVGGDNVDLSMTNGYQVVFHAHSMEEPATITRLISLLDRCISDTCTALVEITLSCLELYSSYRQLGRFTLR
		Caenorhabditis_elegans          STLMGHLLHDLEVVDSRTIDKFHEAARNGKSFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATKEHALLLRSLGVTQLIVAVNKLDDWSQDRFDEIFVPVSGFTGENLDWYPCLLELIDPQPPSDGPLRIGISDVGKIESGEVEDDKVYIMSSVTAATVKECANCFAGDYILLTIIKGAKAELYAHSLCVPCTFTNLLYTINRFIAKGASAVVEIEDIAIETFTSCRALGRVTFR
		Drosophila_melanogaster         STLMGHLLYDTGNVSQRVMHKHQESKKLGKSFMYAWVLDETGEERARGITMDVGQSRIETKTKIVTLLDAPGHKDFIPNMISGATQADVALLVVDATREHAILVRSLGVNQLGVVINKLDGWSQDRFTEIFTPCSGLTGENLNWYRHLLDVIEPERAIDRPLRMSVSDIGRVETGVLCNDKVLVGASREQAQVKSLMNVFAGDQVSVTITMGFPVLLHHQSLIEPAVVCKLTASIHRCLGNNSCALVELEPICIERYADFKELGRVMLR
		Mus_musculus                    STLMGHMLYLLGNVNKRTMHKYQESKKAGKSFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDATREHGLLVRSLGVTQLAVAVNKMDNWQQERFQEIFIPTSGLSGENLTWYMCLLEQIDPQRSIDKPFRLCVSDVGKIEAGYIQGDRLLAMPPNETCTAKGILHAAAGDHVNLTITKGFPVLLHYQTVSEPAVIKRLISVLNKLLTKGQNALVELQPVALELYKDFKELGRFMLR
		Homo_sapiens                    STLMGHMLYLLGNINKRTMHKYQESKKAGKSFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDATREHGLLVRSLGVTQLAVAVNKMDNWQQERFQEIFIPTSGLSGENLKWYLCLLEQIDPQRSIDKPFRLCVSDVGKIEAGYIQGDRLLAMPPNETCTVKGILHAAAGDHVSLTITKGFPVLLHYQTVSEPAVIKRLISVLNKFLTKGQNALVELQPIALELYKDFKELGRFMLR
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;