#NEXUS [written Fri Apr 09 12:18:29 EDT 2010 by Mesquite version 2.7 (build 510) at dhcp128036183245.central.yale.edu/128.36.183.245] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=25; TAXLABELS Mirabilis_glabrifolia Nyctaginia_capitata Okenia_hypogaea Boerhavia_alata Boerhavia_anisophylla Boerhavia_coccinea Boerhavia_diffusa Boerhavia_erecta Boerhavia_gracillima Boerhavia_spicata Boerhavia_xantii Commicarpus_arabicus Commicarpus_brandegeei Commicarpus_plumbagineus Commicarpus_scandens Cyphomeris_crassifolia Cyphomeris_gypsophiloides Anulocaulis_annulatus Anulocaulis_eriosolenus Anulocaulis_hintoniorum Anulocaulis_leiosolenus_gypsogenus Anulocaulis_leiosolenus_howardii Anulocaulis_leiosolenus_lasianthus Anulocaulis_leiosolenus_leiosolenus Anulocaulis_reflexus ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=41; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7"; CHARSTATELABELS 1 Duration / annual perennial, 2 Mucilaginous_rings_on_stems / absent present, 3 Leaf_arrangement / evenly_distributed_along_the_stem concentrated_on_the_lower_half, 4 Leaf_consistency / herbaceous succulent 'leathery-succulent', 5 Leaf_margin / entire sinuate_to_undulate crenulate, 6 Leaf_apex_angle / acute obtuse, 7 Pustules_on_leaves / absent present, 8 Inflorescence_ramification / absent present, 9 Ramification_pattern / monopodial sympodial, 10 Minimum_flowering_unit_arrangement / umbelliform racemiform monochasium, 11 Pedicel_subtending_the_flowers / absent present, 12 Number_of_bracts_subtending_a_single_flower / 1. 2. 3. 4. 5., 13 Floral_bract_texture / herbaceous chartaceous scarious, 14 Floral_bract_shape / lanceolate ovate widely_ovate, 15 Pustules_on_floral_bracts / absent present, 16 Bracts_persistence_in_mature_fruits / deciduous persistent_not_accrescent persistent_accrescent, 17 Perianth_limb_color / white_to_pink violet_to_magenta 'reddish-orange' 'yellow-green', 18 Perianth_shape / campanulate 'funnel-shaped', 19 'Chasmogamous flower length (mm)' / '0.1-6.2' '6.2-12.5' '12.5-20.0' '20.0-26.8' '26.8-31.8' '31.8-38.0', 20 Perianth_indumentum / absent present, 21 Perianth_pubescence / puberulent villous, 22 Stigma_surface / smooth papillate, 23 'Anther width (mm)' / '0.2-1.1' '1.3-2.3', 24 'Exerted portion of the filaments (mm)' / '0.2-9.5' '12.0-40.0_', 25 Fruit_shape / turbinate biturbinate fusiform obovoid_to_obpyramidal claviform ellipsoid, 26 'Fruit length (mm)' / '2.3-4.4' '4.4-7.0' '7.0-9.6', 27 'Fruit width (mm)' / '0.4-2.0' '2.0-3.4' '3.4-4.9' '4.9-7.4', 28 Fruit_symmetry_in_the_transverse_plane / bilateral asymmetric, 29 Fruit_symmetry_in_the_longitudinal_plane / symmetric asymmetric, 30 Fruit_rib_number / '4-5' 10, 31 Ribs_profile_in_polar_view / triangular 'round-obtuse' linear, 32 Equatorial_crest_on_the_fruit / absent present, 33 Hyaline_glands_on_fruits / absent present, 34 Verrucose_glands__on_fruits / absent present, 35 Mucilage_on_wet_fruits / absent present, 36 Tubercles_on_wet_fruit / absent present, 37 Raphides_on_fruit / absent present, 38 Stalk_in_fruit / absent present, 39 Fruit_orientation_with_pespect_to_the_stalk / straight inclined, 40 Raphides_in_cotyledons / absent present, 41 'chromosomal Number (N)' / 12. 13. 20. 22. 24. 26. 27. 58. ; MATRIX Mirabilis_glabrifolia 101(0 1)0001120412021011010030010010101110-0? Nyctaginia_capitata 1001(1 2)0(0 1)0-00-0(0 1 2)12213110(0 1)(0 1)01(1 3)1011000101100? Okenia_hypogaea 000(0 1)(0 1)(0 1)(0 1)0--0221(0 1)01131(0 1)00052300--000000110? Boerhavia_alata 000110(0 1)1100(0 1)2(0 1)100000-0003001000000100100? Boerhavia_anisophylla 10(0 1)2101112(0 1)(1 2)2201101100003001001000100100? Boerhavia_coccinea 10000001100(0 1)2(0 2)0010010000(3 4)001001010101100(0 5) Boerhavia_diffusa 1010(0 1)(0 1)0110002200100100003001001010101100(1 5 6 7) Boerhavia_erecta 0(0 1)0000(0 1)1100(0 1 2)20100000-00030010000001011005 Boerhavia_gracillima 10101001120220101001000040010010101011(0 1)0? Boerhavia_spicata 0(0 1)0010(0 1)1110020100000-00030010010001011005 Boerhavia_xantii 0(0 1)011011110(0 1)2(0 1)100000-(0 1)003001000000101100? Commicarpus_arabicus 10001001101(1 2 3)0000011100004101011011(0 1)011112 Commicarpus_brandegeei 10001001101000000111000041010110(0 1)1001111? Commicarpus_plumbagineus 10001001101(1 2)00000111000042010110110011112 Commicarpus_scandens 10001001101(1 2)00003100-0004201011001001111? Cyphomeris_crassifolia 11011(0 1)00-1102000111101004201111000111110(1 3) Cyphomeris_gypsophiloides 11010000-11020001110-10042011110001111103 Anulocaulis_annulatus 11(0 1)22(0 1)11000(1 2)2(0 2)110111100020100120000000-04 Anulocaulis_eriosolenus (0 1)1122111020(3 4)2211011110000011012000(0 1)101004 Anulocaulis_hintoniorum 11122(0 1)11120322111121000021100120000100-0? Anulocaulis_leiosolenus_gypsogenus 11122111020022110150-0111130011100100100? Anulocaulis_leiosolenus_howardii 11122111020022111140-0111120011100100100? Anulocaulis_leiosolenus_lasianthus 1112211102002211014100111120011100100100? Anulocaulis_leiosolenus_leiosolenus 11122111020021110150-01111200111001001004 Anulocaulis_reflexus 11122111020022110120-01(0 1)1120011100100100? ; OPTIONS MSTAXA = POLYMORPH; END; BEGIN TREES; Title 'Hernandez-Ledesma-et al SB 09-25'; LINK Taxa = Taxa; TRANSLATE 1 Mirabilis_glabrifolia, 2 Nyctaginia_capitata, 3 Okenia_hypogaea, 4 Boerhavia_alata, 5 Boerhavia_anisophylla, 6 Boerhavia_coccinea, 7 Boerhavia_diffusa, 8 Boerhavia_erecta, 9 Boerhavia_gracillima, 10 Boerhavia_spicata, 11 Boerhavia_xantii, 12 Commicarpus_arabicus, 13 Commicarpus_brandegeei, 14 Commicarpus_plumbagineus, 15 Commicarpus_scandens, 16 Cyphomeris_crassifolia, 17 Cyphomeris_gypsophiloides, 18 Anulocaulis_annulatus, 19 Anulocaulis_eriosolenus, 20 Anulocaulis_hintoniorum, 21 Anulocaulis_leiosolenus_gypsogenus, 22 Anulocaulis_leiosolenus_howardii, 23 Anulocaulis_leiosolenus_lasianthus, 24 Anulocaulis_leiosolenus_leiosolenus, 25 Anulocaulis_reflexus; TREE t1 = (1,((5,(((25,(22,23,(21,24))),(20,(18,19))),(2,3))),(9,(7,(6,(((16,17),(13,(15,(12,14)))),(10,(8,(4,11))))))))); TREE t2 = (1,((5,(((25,(22,23,(21,24))),(20,(18,19))),(2,3))),(9,(7,(6,(((16,17),(15,(14,(12,13)))),(10,(8,(4,11))))))))); TREE t3 = (1,((9,(7,(6,((16,17),(13,(12,(14,15)))),(10,(8,(4,11)))))),(5,(((25,(22,23,(21,24))),(20,(18,19))),(2,3))))); TREE t4 = (1,((5,((20,((25,(22,23,(21,24))),(18,19))),(2,3))),(9,(7,(6,(((16,17),(13,(15,(12,14)))),(10,(8,(4,11))))))))); TREE t5 = (1,((5,((19,(18,(20,(25,(22,23,(21,24)))))),(2,3))),(9,(7,(6,(((16,17),(13,(15,(12,14)))),(10,(8,(4,11))))))))); TREE t6 = (1,((5,((20,((25,(22,23,(21,24))),(18,19))),(2,3))),(9,(7,(6,(((16,17),(15,(14,(12,13)))),(10,(8,(4,11))))))))); TREE t7 = (1,((5,((19,(18,(20,(25,(22,23,(21,24)))))),(2,3))),(9,(7,(6,(((16,17),(15,(14,(12,13)))),(10,(8,(4,11))))))))); TREE t8 = (1,((9,(7,(6,((16,17),(13,(12,(14,15)))),(10,(8,(4,11)))))),(5,((20,((25,(22,23,(21,24))),(18,19))),(2,3))))); TREE t9 = (1,((9,(7,(6,((16,17),(13,(12,(14,15)))),(10,(8,(4,11)))))),(5,((19,(18,(20,(25,(22,23,(21,24)))))),(2,3))))); TREE t10 = (1,((5,((18,19,20,(25,(22,23,(21,24)))),(2,3))),(9,(7,(6,((16,17),(12,13,14,15)),(10,(8,(4,11)))))))); END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 3 5 - 11 15 17 - 18 20 - 25 - 28\3 41, ord: 4 12 - 14 16 - 19\3 26 - 27; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 41; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3790907883240441630; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 726534868437299956; checksumv 0 2 2379105566 null; endTell; getWindow; tell It; suppress; setResourcesState true false 327; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 986 553; setLocation 217 77; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #726534868437299956 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 217 77; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; endTell; end;