#NEXUS [written Wed Apr 07 14:07:13 EDT 2010 by Mesquite version 2.71 (build 514) at clitocybe1.bio.utk.edu/160.36.155.106] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=11; TAXLABELS EU526853Uncultured_Sebacinacea DQ974764Uncultured_Sebacinales EF417824Uncultured_Sebacinales FM202813Uncultured AJ893256Uncultured_Sebacinacea AJ893260Uncultured_Sebacinacea FN687610 AJ966757Sebacina_dimitica EF611157Uncultured_Sebacinacea FN687611 AF291268Outgroup_Auricularia_a ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=648; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX EU526853Uncultured_Sebacinacea TTGATTGCGAATCGTTGCCTTCTGTGCTGGCCAGCTC---TGGCAAGTGCACGTCGGTGACTTT-CATCCAATACCC-TGTGAACCTTTGGCCTCTGC-TAGC-TTCGGCCGGCAGGGGAA-TTTACACACACTCGAATGTAATGAAA--TTTATTGTCGTGCGCAAGCACTAATGTACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACC-CTTTGGCATTCCGAAGGGTATGCTC-GTTTGAGTGTCATT-GTACTCTCACACTCCC--AGTCTTT---GGATT----GGG-AGG--TGGACTTGGGTG-TTGCTGCTTTACC-GTGGCTCACCTC-AAATGGATTC-G-TGCAACTCTTGGTTGGACA-TAGTACGGCGTGATAA-GTGT-TTCGCCGGCACCTCACT-----AGA--GGGTGGCTGAT-CGGGAGCTCTGTGCT-------T-CAAA----CCGTCTTC-GG--ACAATGA-----CT--GACAAC-TTG-ACCTCAAATCGA-GTA-GGACCACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA DQ974764Uncultured_Sebacinales TTGATTGCGAATCGTTGCCTTCTGTGCTGGCCAG?????--GGCAAGTGCACGTCGGTGACTTT-CATCCAATACCC-TGTGAACCTTTGGCCTCTGC-TAGC-TTCGGCCGGCAGGGGAA-TTTACACACACTCGAATGTAATGAAA--TTTATTGTCGTGCGCAAGCACTAATGTACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAA?TGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACC-CTTTGGCATTCCGAAGGGTATGCTC-GTTTGAGTGTCATT-GTACTCTCACACT--CCCAGTCTTT---GGATT----GGG-AGG--TGGACTTGGGTG-TTGCTGCTTTACC-GTGGCTCACCTC-AAATGGATTC-G-TGCAACTCTTGGTTGGACA-TAGTACGGCGTGATAA-GTGT-TTCGCCGGCACCTCACT-----AGA--GGGTGGCTGAT-CGGGAGCTCTGTGCT-------T-CAAA----CCGTCTTC-GG--ACAATGA-----CT--GACAAC-TTG-ACCTCAAATCGA-GTA-GGACCACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA EF417824Uncultured_Sebacinales TTGATTGCGAATCGTTGTCTCCAGTGCTGGCCAGTCCTTCTGGCAAGTGCACGTTGGCGGCTTTTCATCCAATACCCCTGTGAACCTTTGGCCTCTTGCTAGCCTT-GGCCGGCAGAGGAATTTTACACCCACTCGAATGTAATGAAA--T-TATTGTTGTGCGTAAGCACTAATGTACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACC-CTTTGGCATTCCGAAGGGTATGCTC-GTTTGAGTGTCATT-GTACTCTCACACT-TCTGATCCTTT---GGATT----GGG-AGCGGTGGACTTGGGTG-TTGCTGCTTTGCG-GTGGCTCGCCTC-AAATGCATT-AG-TGCAACTCTTGGTTGGACA-TAGTACGGCGTGATAA-GTGTCTTCGCCGGCACCTCGC-----AAGA--GGGTGGCTGAT-CAGGAGCTCTGTGCC-------TCCAA-CGGTCTGTCTTCA-G--ACAA---CAA--CTT-GACAAC-TTG-ACCTCAAATCGA-GTA-GGACCACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA FM202813Uncultured --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACC-CTTTGGCATTCCGAAGGGTATGCTC-GTTTGAGTGTCATT-GTACTCTCACACT-TCTGATCTTTT---GGATT----GGG-AGCGGTGGACTTGGGTG-TTGCTGCTTTGCG-GTGGCTCGCCTC-AAATGCATT-AG-TGCAACTCTTGGTTAGACA-TAGTACGGCGTGATAA-GTATCTTCGCCGGCACCTCGC-----AAGA--GGGTGGCTGAT-CAGGAGCTCTGTGCT-------TCCAA-CAGTCTGTGTTCA-G--ACAA---CAA--CT--GACAAC-TTG-ACCTCAAATCGA-GTA-GGACCACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA AJ893256Uncultured_Sebacinacea T-GATTACGAATGGTTGCCTTCCGTGCTGGCCAGAAACT--GGCAAGTGCACGTCGGTGGCTTT-CATCCAATACCC-TGTGAACCTTTGGCCTCTTGCTAGC-TTCGGCCGGCAGAGGAACTTTACACAAACTCGAATGTAATGAAA--TCTATTGTCGTGCGCAAGCACTAATGTACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACC-CTTTGGCATTCCGAAGGGTATGCTC-GTTTGAGTGTCATT-GTACTCTCACACT-CCCGATCTTTC---G-ATT----GGG-AGCGGTGGACTTGGGTG-TTGCTGCTTACC--GTGGCTCACCTC-AAATGGATTC-G-TGCATCTCTTGGTTGGACA-TAGTACGGCGTGATAA-GTATCTTCGCCGGCGCCTCACTT--C--GA--GGGTGGCCGAT-CGGGAGCTCTGTGCT-------T-CAAA----CCGTCTTC-GG--ACA-C--CAA--CT--GACAAC-TTG-ACCTCAAATCGA-GTA-GGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA AJ893260Uncultured_Sebacinacea -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-GTACTCTCACACTCTCTGATCCTTT---GGATTT--GGGG-AGCGGTGGACTTGGGTGCTTGCTGCTTCCTT-GTGGCTCACCT-GAAATGCAT-CAG-TGCATCTCTTGATTGGACA-TAGTACGGCGTGATAA-GTGTCTTCGCCGGCACCTCAT-----AAGA--GGGTGGCCGAT-CGGGAGCTCTGTGCT------TT-CAAA----CTGTCTTC-GG--ACAAC--C----CT--GACAAC-TTG-ACCTCAAATCGA-GTA-GGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA FN687610 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGTGA-TCATCGAATCTTTGAACGCACATTGCGCC-CTTTGGAATTCCCCGGGG-GTGC-GTGTTCTAGCGTGATTTGACCTCTCACCCTCTCTGGTCCTTT---GGATTT--GGGG-AGCGGTGGACTTGGGTGCTTGCTGCTTCCTT-GTGGCTCACCT-GAAATGCAT-CAA-TGCATCTCTTGATTGGACA-TAG-ACGGCGTGATAA-GTGTCTTCCCCGGCACCTCAT-----AAGA--GGGTGGCCGAT-CGGGAGCTCTGTGCT------TT-CAAA----CTGTCTTC-GG--ACAAC--C----CT--GACAAC-TTG-ACCTCAAATCGA-GTA-GGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA AJ966757Sebacina_dimitica -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-GTACTCTCACTCTCTCTGATCCTTT---GGATTC-A-GGG-AGTGGTGGACTTGGGTGTTTGCTGCTTCCTT-GTGGCTCACCTC-AAATGCGT-CAG-TGCACCTCTTGATTGGACA-TAGTACGGCGTGATAA-GTATCTTCGCCGGCACCTCG-----CAAGA--GGGTGGCCGATT-GGGAGCTCTGTGCT------TT-CAAA----CCGTCTTC-GG--ACAA----TTT-CT--GACAAC-TTG-ACCTCAAATCGA-GTA-GGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA EF611157Uncultured_Sebacinacea -----------------------------------TGTCGCAAATCCCACACACCTGTGCACCTATGACTCTGAGTACCG--CTTTGCATGGGCCCCTCAAAGGCCCTGGTACTCGAGTACTTTTACACACTCTGGA-TGTAATG-GAATGTCTATTGTACAATGTACAACTAA--AACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACC-CTTTGGTATTCCGAAGGGTACACCC-GTTTGAGTGTCATT-GTAATCTCA-CCCCTTTGACTTTTTTGTTGA-TC-----G--GTG-TGGACTTGGATG-TTGCTGTGTAACAAACGGCTCGTCT-GAAATGCCT-GAG-TGTA-CCCTGCTTTGCGGCGTATTT-GGTGTGATAAA-T--CTTCACCAGAGTTGACTTTTTCAA------GTCGC-GCTT--GTACCTGTGGGCTCTATGCTTCCAA-----CCGTCCT---G--ACAA-GACAAT-CTTTGACAA-TTTG-ACCTCAAATCGG-GT-GGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA FN687611 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTCTTTGGTATTCCGAAGGGCATGCCCTGTTTGAGTGTCATT-GAAATCTCA-CCCCTTTGACTTTTTTGTTGA-TCG-------ATG-GGGACTTGGATG-TTGCTGTGTAACAAACGGCTCGTCT-GAAATGCCT-GAG-TGTA-CCCTGCTTTGCGGCGTATTT-GGTGTGATAAA-T--CTTCACCAGAGTTGATTTTTTCAA------GTCGC-GCTT--GTACCTGTGGGCTCTATGCTTCCAA-----CCGTCCT---G--ACAA-GACAAT-CTTTGACAA-TTTG-ACCTCAAATCGG-GT-GGGACTACCCGCTGAACTTAAGCATATCAATAACCGGAGGAA AF291268Outgroup_Auricularia_a AAGATT-CTYGGGGTTCGTCCCCCAAACTTCATTCAGCTGTGCGCTTCGGCTGCACGCTG-GACGAAAATCTCACACCTGTGCACCTTT----TCGGTCGCGGTTTCGGCCGCTTCCGC---TTTACATGCAACTACAAAAGTCCAGAATGTGATCTAAACGATAAAAGT--AA----CAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCT-CCTTGGTATTCCATGGAGCATGCCT-GTTTGAGTGTCAC--GTAAACCCTCA-CCCTCGCGATGTAAC---AGTCG---CCCGCGG-TGGACTTGGACCGT-GCCGT--AA-T--CGGCTCGTCTTGAAATGCATT-AGCTGGCGCTTTTAGAGTGCTGGGCG-ACGGTGTGATAA-TTATCTGCGCCAATAGCCCT----------GGGCCT-----CTTCAGCGGCGCTG--CT-TA----------CAG-CCGTCCCTCGTGGACAACTATTTTAAA--G-C---TTTGG-CCTCAAATC-AGGTA-GGACTACCCGCTGAACTTAAGCATATCAA------------ ; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE 1 EU526853Uncultured_Sebacinacea, 2 DQ974764Uncultured_Sebacinales, 3 EF417824Uncultured_Sebacinales, 4 FM202813Uncultured, 5 AJ893256Uncultured_Sebacinacea, 6 AJ893260Uncultured_Sebacinacea, 7 FN687610, 8 AJ966757Sebacina_dimitica, 9 EF611157Uncultured_Sebacinacea, 10 FN687611, 11 AF291268Outgroup_Auricularia_a; TREE Imported_tree_0 = ((10:0.03556995558853939,9:0.011440706600673287)89:0.44262788717216073,((4:0.02292599034622626,3:0.0112175418852998)84:0.013925143083146081,((5:0.025161245798918652,((7:0.05883728643997817,6:2.01601772686662E-6)60:0.024099183347999233,8:0.050750777337740326)61:0.0900239720604931)39:0.026244803454082588,(1:2.01601772686662E-6,2:2.01601772686662E-6)99:0.03421117104264226)20:0.03214236928507788)87:0.3534735483690016,11:0.9886902398711774); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 648; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 648; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 648; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7074557454301532641; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3149877727308999858; checksumv 0 2 2613668874 null; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 467; setLocation 156 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7074557454301532641 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7074557454301532641; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 400; setLocation 156 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7074557454301532641 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 2628.1270646752433.3676178231175619579; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 400; setLocation 156 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(11:0.4943451199355887,((9:0.011440706600673287,10:0.03556995558853939)89:0.44262788717216073,((3:0.0112175418852998,4:0.02292599034622626)84:0.013925143083146081,((1:2.01601772686662E-6,2:2.01601772686662E-6)99:0.03421117104264226,(5:0.025161245798918652,(8:0.050750777337740326,(6:2.01601772686662E-6,7:0.05883728643997817)60:0.024099183347999233)61:0.0900239720604931)39:0.026244803454082588)20:0.03214236928507788)87:0.3534735483690016):0.4943451199355887);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;