NEXUS
[File created by TreeBASE:  7/26/07  21:02:53]
[Matrix accession#: M1553]

BEGIN TAXA;
	TITLE M1553;
	DIMENSIONS  NTAX=9;
	TAXLABELS
		Ighermia_pinifolia	Pluchea_purpurascens	Rhodogeron_coronopifolius	Sachsia_divaricata_1	Sachsia_divaricata_2	Sachsia_polycephala_BAHAMAS	Sachsia_polycephala_FLORIDA	Sachsia_Tricephala	Vierea_laevigata
	;
END;

BEGIN CHARACTERS;
	TITLE M1553;
	DIMENSIONS NCHAR=712;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	CHARSTATELABELS
		72 GAP, 90 GAP, 107 GAP, 135 GAP, 138 DOUB, 139 DOUB, 140 DOUB, 144 GAP, 151 GAP, 167 GAP, 171 GAP, 208 GAP, 212 GAP, 247 GAP, 278 5.8, 279 5.8, 280 5.8, 281 5.8, 282 5.8, 283 5.8, 284 5.8, 285 5.8, 286 5.8, 287 5.8, 288 5.8, 289 5.8, 290 5.8, 291 5.8, 292 5.8, 293 5.8, 294 5.8, 295 5.8, 296 5.8, 297 5.8, 298 5.8, 299 5.8, 300 5.8, 301 5.8, 302 5.8, 303 5.8, 304 5.8, 305 5.8, 306 5.8, 307 5.8, 308 5.8, 309 5.8, 310 5.8, 311 5.8, 312 5.8, 313 5.8, 314 5.8, 315 5.8, 316 5.8, 317 5.8, 318 5.8, 319 5.8, 320 5.8, 321 5.8, 322 5.8, 323 5.8, 324 5.8, 325 5.8, 326 5.8, 327 5.8, 328 5.8, 329 5.8, 330 5.8, 331 5.8, 332 5.8, 333 5.8, 334 5.8, 335 5.8, 336 5.8, 337 5.8, 338 5.8, 339 5.8, 340 5.8, 341 5.8, 342 5.8, 343 5.8, 344 5.8, 345 5.8, 346 5.8, 347 5.8, 348 5.8, 349 5.8, 350 5.8, 351 5.8, 352 5.8, 353 5.8, 354 5.8, 355 5.8, 356 5.8, 357 5.8, 358 5.8, 359 5.8, 360 5.8, 361 5.8, 362 5.8, 363 5.8, 364 5.8, 365 5.8, 366 5.8, 367 5.8, 368 5.8, 369 5.8, 370 5.8, 371 5.8, 372 5.8, 373 5.8, 374 5.8, 375 5.8, 376 5.8, 377 5.8, 378 5.8, 379 5.8, 380 5.8, 381 5.8, 382 5.8, 383 5.8, 384 5.8, 385 5.8, 386 5.8, 387 5.8, 388 5.8, 389 5.8, 390 5.8, 391 5.8, 392 5.8, 393 5.8, 394 5.8, 395 5.8, 396 5.8, 397 5.8, 398 5.8, 399 5.8, 400 5.8, 401 5.8, 402 5.8, 403 5.8, 404 5.8, 405 5.8, 406 5.8, 407 5.8, 408 5.8, 409 5.8, 410 5.8, 411 5.8, 412 5.8, 413 5.8, 414 5.8, 415 5.8, 416 5.8, 417 5.8, 418 5.8, 419 5.8, 420 5.8, 421 5.8, 422 5.8, 423 5.8, 424 5.8, 425 5.8, 426 5.8, 427 5.8, 428 5.8, 429 5.8, 430 5.8, 431 5.8, 432 5.8, 433 5.8, 434 5.8, 435 5.8, 436 5.8, 437 5.8, 438 5.8, 439 5.8, 440 5.8, 441 5.8, 457 GAP, 518 GAP, 554 GAP, 622 GAP, 640 GAP, 675 END, 676 END, 677 END, 678 END, 679 END, 680 END, 681 END, 	682 END
	;
	MATRIX
		Ighermia_pinifolia                TCGAAGCCTATAAA-GCAGAAAGACCCGTGAACGTGTAACAACAATAGCGCGTCATAGGGATCAGGCTTTTCATTTGTGACCTATG---GACCCTCGTCGATTTG-GCATCCATGGACGCCTCTTCGGAGCCT-GCCTT-GG-GTGTC-AGAAAAGGCGTAACAAACAAAGCCC-GGCGCGGCATGTGCCAAGGAAAACTCAAATTTCAGGCAAGGCGTCATGCCATGTTGCCCCGTTCGCGGTG-GTGTGCATGGGATGTGGCTTCTTTTTAACCACAAACGACTCTCGGCAACGGATATCTTGS-TCACGCATCGATGAAGAACGTAGCAAAATGCGATACTTGGTGTRAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGGCTGAGGGCACGTMTGCCTGGGCGTCACGCAT-CG-GTCGCTCC-GTCATCTTGCCTCCTCAAAGGGGTATACTGGATAGGAGCGGATACTAGTCTCCCGTGCCT-GATGGT-GCGGTTGGCCAAAATAGAAGTCTCCTTCGCAAGGACACAGGGCAAGTGGTGGTTGACAAAACCTTAGTCTCGTGTTGTGTGTCCTGAGTTGTAAAGCCGAAGACCTCGTAAGTA-GCCCTAACGTGTTGTCTAGTGACGACGCTTCGACCGCGACCCCAGGTCAG-----------------------
		Pluchea_purpurascens              TCAAAACCTGCATA-GCAGAACGACCCGAGAACCTGTACAAACTGTCTGGTGTCAAAGGGGTCAGGCTT--GATGTTTGACCGTTGTGACTGCCTTGTTGATTTGCCCATCCATGGTTCCC-CTTTGGGGTCT-GCGT--GGTCCGTC-AGAATCAACACAACAACCAAAGCCCCGGCACGGCATGTGCCAAGGACAACTTAACTT-GAAGCAAGGGCCTATGCCATGCCACCACGTTCGCGATGGCTGTGCATGACATGTGGCTTCTTTGTAACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT-GCGTCGCCCCCCTCATCGTGCTTCCCTTATGGGGATACACGGGGTCGGGCGGATATTGGTCTCCCGTTTCC-GAAGCTTACGGATGACCAAAATAGGAGTCCCCTT-GGACGGACGCACGACAAGTGGTGGTTGACTAAACCTTCGTCTCGTGTCGTGT-T--T-AGCCGTGAGG-GGAAGGCAACACAAAAATCCCACAGCATGTCGTCTTGTGACGATGCTTCGACC--------------------------------------
		Rhodogeron_coronopifolius         TTGAAGCCTGCATA-GCAAAACAACCTGAGAACCTGTACAAATTGTCTGGTGTCACAGGG-TCGGGCTT--GATGTTCGACCCATGTGGCCGCCTTGTTGATTTGTCCATCCATGGTCACCCCTTTGGGGTCTTCGT---GGGCCGTC-GGAATCAACACAACAACCAAACCCCCGGCACGGCATGTGCCAAGGAAAACTGAACTT-GAAGCAATGGCTTATGCCATGCCACCACGTTCGCGTCGGCTGTGCAAGGCATGTTGCTTCTTTGTAACCACAAACGACTCTCGGCAACGGATATCTCGGCTCACGCATCGATGAAGAACGTAGCAAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCTGAGGGCACGTCTGCCTGGGCGTCACATAT-CGCGTCGCCCCCCTCATCGTGCCTCCCTGAT-GGGATGTACGGGGTGGGGCGGATATTGGTCTCCCGTTC-T-GACGGT-GCGGATGGCCAAAATAGGAGTCCCCTT-GGACGGACGCACGATAAGTGGTGGTTGACTAAACCCTTGTTTCGTGTCGTGTGTTTTAATCTGTGAGG-GGAAGGAAACACAAGAAACCCCCAACGTGTCGTCTTGTGACGATGCTTTGACCGCGACCCCAGGTCAGGCGGGACTACCCGCTGAGTTTAA
		Sachsia_divaricata_1              TCGAAGCCTGCATA-GCAGAACGACCTGAGAACCTGTACAAATCGTCCGGTGTCATAGGGGTCGGGCTT--GATGTTCGACCCATGTGGCTGCCTTGTTGATTTGCCCATCCTCGGTCACCTCTTTGGGGTCTTCCG---GGACTGTC-GGAATCAACACAACAACCAAAC-CCCGGCACGGCATGTGCCAAGGAAAACTGAACTT-GAAGCAAGGGCTTATTCCATGCCACCACGTTCGCGTCGGCTGTGCAAGGCATATGGCTTCTTTGTAACCACAAACGACTCTCGGCAACGGATATCTCGGCTCACGCATCGATGAAGAACGTAGCAAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCTGAGGGCACGTCTGCCTGG-CGTCACGTAT-CGCGTCGCCCCCCTCATCGTGCCTCCCTGATGGGGATGCACGGGGTGGGGCGGATATTGGTCTCCCGTTCCTTCGAGGT-GCGGATGGCCAAAATAGGAGTCCCCTT-GGACGGACGCACGACAAGTGGTGGTTGACTAAACCCTCGTCTCGTGTCGTGTGTTTTGAACCGTGAAG-GGAAGGCAACACAAGAAACCCCCAACGTGTCGTCTTGTGACGATGCTTCGACCGCGACCCCAGGTCAGGCGGGACT---------------
		Sachsia_divaricata_2              TCGAAGCCTGCATA-GCAGAACGACCTGAGAACCTGTACAAATCGTCCGGTGTCATAGGGGTCGGGCTT--GATGTTCGACCCATGTGGCTGCCTTGTTGATTTGCCCATCCTCGGTCACCTCTTTGGGGTCTTCCG---GGACTGTC-GGAATCAACACAACAACCAA-GCCCCGGCACGGCATGTGCCAAGGAAAACTGAACTT-GAAGCAAGGGCTTATTCCATGCCACCACGTTCGCGTCGGCTGTGCAAGGCATATGGCTTCTTTGTAACCACAAACGACTCTCGGCAACGGATATCTCGGCTCACGCATCGATGAAGAACGTAGCAAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCTGAGGGCACGTCTGC-TGGGCGTCACGTAT-CGCGTCGCCCCCCTCATCGTGCCTCCCTGATGGGGATGCACGGGGTGGGGCGGATATTGGTCTCCCGTTCCTTCGAGGT-GCGGATGGCCAAAATARGAGTCCCCTT-GGACGGACGCACGACAAGTGGTGGTTGACTAAACCCTCGTCTCGTGTCGTGTGTTTTGAGCCGTGAAG-GGAAGGCAACACAAGAAACCCCCAACGTGTCGTCTTGTGACGATGCTTCGACCGCGACCCCAGGTCAGGCGG-------------------
		Sachsia_polycephala_BAHAMAS       TCGAAGCCTGCATA-GCAGAACGACCTGAGAACCTGTACAAATCGTCCGGTGTCATAGGGGTCGGGCTT--GTTGTCCGACCCATGTGGCTGCCTTGTTGATTTGCCCATCCTCGGTCACCTCTTTGGGGTCTTCCG---GGACTGTCTGCAATCAACACAACAA-GAAACCCCCGGCACGGCATGTGCCAAGGAAAACTGAACTT-GAA-GAAGGGCTTATTCCATGCCACCACGTTCGCGTCGGCTGTGCAAGGCATATGGCTTCTTTGTAACCACAAACGACTCTCGGCAACGGATATCTCGGCTCACGCATCGATGAAGAACGTAGCAAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCAT-GAGTTTTTGAACGCAAGTTGCGCC-GAAGCCATTCGG-TGAGGGCACGTCTGC-TGGGCGTCACGTAT-CGCGTCGCCCCCCTCATCGTGCCTTCCTGATGGGGATGCACGTTGTGGGGCGGATATTGGTCTCCCGTTCCT-GGAGGT-GCGGATGGCCAAAATAGGAGTCCCCTT-GGACGGACGCACGACAAGTGGTGGTTGACTAAACCCTCGTCTCGTGTCGTGTGTTTTGAACCGTGAAG-GGAAGGCAACACAAGAAACCCCCAACGTGTCGTCTTGTGACGATGCTTCGACCGCG-----------------------------------
		Sachsia_polycephala_FLORIDA       TCGAAGCCTGCATA-GCAGAACGACNTGAGAACCTGTACAAATCGTCCGGTGTCATAGGGGTCGGGCTT--GATGTCCGACCCATGTGGCTGCCTTGTTGATTTGCCCATCCTCGGTCACCTCTTTGGGGTCTTCCG---GGACTGTC-GGAATCAACACAACAACCAAACCCCCGGCACGGCATGTGCCAAGGAAAACTGAACTT-GAAGCAAGGGCTTATTCCATGCCACCACGTTCGCGTCGGCTGTGCAAGGCATATGGCTTCTTTGTAACCACAAACGACTCTCGGCAACGGATATCTCGGCTCACGCATCGATGAAGAACGTAGCAAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCTGAGGGCACGTCTGCCTGGGCGTCACGTAT-CGCGTCGCCCCCCTCATCGTGCCTTCCTGATGGGGATGCACGTTGTGGGGCGGATATTGGTCTCCCGTTCCT-GGAGGT-GCGGATGGCCAAAATAGGAGTCCCCTT-GGACGGACGCACGACAAGTGGTGGTTGACTAAACCCTCGTCTCGTGTCGTGTGTTTTAANCCGTGAAG-GGAAGGCAACACAAGAAACCCCCAACGTGTCGTCTTGTGACGATGCTTCGACCGCNACCCCAGGTC-------------------------
		Sachsia_Tricephala                TCGAAGCCTGCATA-GCAGAACGACCTGAGAACCTGTACAAATTGTCCGGTGTCATAGGGGTCGGGCTT--GATGTCCCACCCATGTGGCTACCTTGTTGATTTGACCATCCTCGGTCACCTGTTTGGGCTCT-GCC---GGACTGT---?AATCAACACAACAA-GAA-GCCCCGGCACGGCATGTGCCAAGGAAAACAGAACTT-GAA-GAAGGGCTTATGCCATGCCACCACGTTCGCGTCGGCTGTGCAAGGCATGTGGCTTCTTTGTAACCACAAACGACTCTCGGCAACGGATATCTCGGCTCACGCATCGATGAAGAACGTAGCAAAATGCGACACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCAGAAGCCATTCGGCTGAGGGCA-GTCTGC-TGGGCGTCACGTAT-CGCGTCGCCCCCCTCAT-GTGCCTCCCTCATGGGGATGCACGGGGTGGGGCGGATATTGGTCTCCCGTTCCT-GAAGGT-GCGGATGGCCAAAATAGGAGTCCCCTT--?ACGGACGCACGACAAGTGGTGGTTCACTAAACCCTCGTCTCGTGTCGTGTGTTTTGAACCGTGAAG-GGAAGGCAACACAAGAAACCCC-AACGTGTCGTCTTGTGACGATGCTTCGACCGCGACCCCAGGTCAGGCGG-------------------
		Vierea_laevigata                  TCGAAGCCTATAAAAGCAAAAAGACCCGTGAACGTGTAACAACAGCAAAAAGTCATAGGGATCAGGCTTTTCGTTTGTGATCTATG---GACCCTCGTCGATTTG-GCATCCATGGTCGCCTCTTTGGAGCCT-GCCTTTGG-GTGTC-AGAAAAGGCGCAACAACCAAAGCCCCGGCACGGCATGTGCCAAGGAAAACGAAACTTTCAGGCAATGCGTCATGCCATGTTGCCCCGTTCGCGGTG-GTGTGCATGGGATGTGGCTTCTTTGTAACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT-CGC-TCGCTCC-GTCACATTGCCTCCTCAAAGGGGTGTGCGAGATAAGAGCGNATACTGGTCTCCCGTGCCT-GATGGTNNCGGTTGGCCAAAATAGGAGTCTTCTTTGCATGGACATACGGCAAGTGGTGGTTGACAAAACCTTAGTCTCGTGTTGTGTGTCCTGGGTTGTAA-GCCGAAGACCTCTTAAGTA-GCCCTAACGTGTTGTCTAGTGATGACGCTTCGACC--------------------------------------
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 712 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;