#NEXUS [MacClade 4.08 registered to Kelly Craven, Noble] BEGIN DATA; DIMENSIONS NTAX=36 NCHAR=525; FORMAT DATATYPE=DNA MISSING=~ GAP=. INTERLEAVE ; MATRIX [ 10 20 30 40 50] [ . . . . .] Epichloe_amarillans_So CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_amarillans_Ah CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_baconii_Cv CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_baconii_As CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_baconii_At CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_brachyelytri_Bee1 CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGAACCCC.....GCCG [45] Epichloe_brachyelytri_Bee2 CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGAACCCC.....GCCG [45] Epichloe_bromicola_Be1 CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_bromicola_Be2 CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_clarkii_Hl CCTCGACGCGTTCCAGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_elymi_Evr CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_elymi_Ec CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_festucae_Frr CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_glyceriae_Gs1 CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_glyceriae_Gs2 CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_sylvatica_Bs1 CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_sylvatica_Bs2 CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Lp1 CCTCGACGCGTTCCCGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Bp CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Dg CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Ps1 CCTCGACGCGTTCCCGTGTTGAGCCCCTGATTTCGTACCCCGCCGAGCCG [50] Epichloe_typhina_Pn1 CCTCGACGCGTTCCGGTGTCGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Pp1 CCTCGATGCGTTCCGGTGTCGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_festucae_Fl1 CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Neotyphodium_x_schardlii_Ca1 CCTCGACGCGTTCCGGTGTCGAGCCCCTGATTTCGTACCCC.....GCCG [45] Neotyphodium_x_schardlii_Ca2 CCTCGACGCGTTCCGGTGTCGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Pp2 CCTCGACGCGTTCCGGTGTCGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Pn2 CCTCGACGCGTTCCGGTGTCGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Pt1 CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Ao CCTCGACGCGTTCCGGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Ae CCTCGACGCGTTCCCGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Lp2 CCTCGACGCGTTCCCGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Pn3 CCTCGACGCGTTCCGGTGTCGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Pt2 CCTCGACGCGTTCCCGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Ps2 CCTCGACGCGTTCCCGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] Epichloe_typhina_Pt3 CCTCGACGCGTTCCCGTGTTGAGCCCCTGATTTCGTACCCC.....GCCG [45] [ 60 70 80 90 100] [ . . . . .] Epichloe_amarillans_So AGCCCGG.....CCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAG [88] Epichloe_amarillans_Ah AGCCCGG.....CCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAG [88] Epichloe_baconii_Cv AGCCCGG.....CCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAG [88] Epichloe_baconii_As AGCCCGG.....CCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAG [88] Epichloe_baconii_At AGCCCGG.....CCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAG [88] Epichloe_brachyelytri_Bee1 AGTGCGG.....CCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAG [88] Epichloe_brachyelytri_Bee2 AGTGCGG.....CCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAG [88] Epichloe_bromicola_Be1 AGCCCGG.....CCACGACG.TGCACGCCCAATGAAC.AGTCGTGATGAG [88] Epichloe_bromicola_Be2 AGCCCGG.....CCACGACG.TGCACGCCCAATGAAC.AGTCGTGATGAG [88] Epichloe_clarkii_Hl AGCCCGG.....CCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAG [89] Epichloe_elymi_Evr AGCCCGG.....CCACGACG.TGCACGCCCAATGGACAAGTCGTGATGAG [89] Epichloe_elymi_Ec AGCCCGG.....CCACGACGTTGCACGCCCAATGGAC.AGTCGTGATGAG [89] Epichloe_festucae_Frr AGCCCGG.....CCACGAAG.TGCACGCCCAACGAAC.AGTCGTGATGAG [88] Epichloe_glyceriae_Gs1 AGCCCGG.....CCACGACG.TGCACGCCCAATGGAC.AGTCGTNATGAG [88] Epichloe_glyceriae_Gs2 AGCCCGG.....CCACGACG.TGCACGCCCAATGGAC.AGTCGTGATGAG [88] Epichloe_sylvatica_Bs1 AGCCCGG.....CCACGACG.TGCACGCCCAACGGAC.AGTAGTGATGAG [88] Epichloe_sylvatica_Bs2 AGCCCGG.....CCACGACG.TGCACGCCCAACGGACAAGTCATGATGAG [89] Epichloe_typhina_Lp1 AGCCCGG.....CCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAG [89] Epichloe_typhina_Bp AGCCCGG.....CCACGACG.TGCACGCCCAACGGACAAGTCATGATGAG [89] Epichloe_typhina_Dg AGCCCGG.....CCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAG [89] Epichloe_typhina_Ps1 AGCCCGG.....CCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAG [94] Epichloe_typhina_Pn1 AGCCCGG.....CCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAG [88] Epichloe_typhina_Pp1 AGCCCGG.....CCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAG [88] Epichloe_festucae_Fl1 AGCCCGG.....CCACGAAG.TGCACGCCCAACGAAC.AGTCGTGATGAG [88] Neotyphodium_x_schardlii_Ca1 AGCCCGG.....CCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAG [88] Neotyphodium_x_schardlii_Ca2 AGCCCGG.....CCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAG [88] Epichloe_typhina_Pp2 AGCCCGG.....CCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAG [88] Epichloe_typhina_Pn2 AGCCCGG.....CCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAG [88] Epichloe_typhina_Pt1 AGCCCGG.....CCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAG [89] Epichloe_typhina_Ao AGCCCGG.....CCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAG [89] Epichloe_typhina_Ae AGCCCGG.....CCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAG [89] Epichloe_typhina_Lp2 AGCCCGG.....CCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAG [89] Epichloe_typhina_Pn3 AGCCCGG.....CCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAG [88] Epichloe_typhina_Pt2 AGCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAG [94] Epichloe_typhina_Ps2 AGCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAG [94] Epichloe_typhina_Pt3 AGCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAG [94] [ 110 120 130 140 150] [ . . . . .] Epichloe_amarillans_So AGGCGGACCGAGAC.....AAAATGAACGAATGCGGTATTCGAGAACTG. [132] Epichloe_amarillans_Ah AGGCGGACCGAGAC.....AAAATTAACGAATGCGGTATTCGAGAACTG. [132] Epichloe_baconii_Cv AGGCGGACCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG. [132] Epichloe_baconii_As AGGCGGATCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG. [132] Epichloe_baconii_At AGGCGGATCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG. [132] Epichloe_brachyelytri_Bee1 AGGCGGACCGAGAC.....AAAATTCATGAATGCGGTATTCGAGAACTG. [132] Epichloe_brachyelytri_Bee2 AGGCGGACCGAGAC.....AAAATTCATGAATGCGGTATTCGAGAACTG. [132] Epichloe_bromicola_Be1 AGGCGGACCGAGAC..AAAAAAAATAATGATTGCGGTATTCGAGAACTG. [135] Epichloe_bromicola_Be2 AGGCGGACCGAGACAAAAAAAAAATGATGATTGCGGTATTCGAGAACTG. [137] Epichloe_clarkii_Hl AGGCGGACCGAGAC.....AACATTGATGAATGCGGTATTCGAAAACCG. [133] Epichloe_elymi_Evr AGGCGGACCGAGAC...AAAAAATTAATGATTGCGGTATTCGAGAACTGT [136] Epichloe_elymi_Ec AGGCGGACCGAGAC...AAAAAATTAATGATTGCGGTATTCGAGAACTGT [136] Epichloe_festucae_Frr AGGCGGACCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG. [132] Epichloe_glyceriae_Gs1 AGGCGGATCGAGAC.....AAAATTAAAGATTGCGGTATTCGAGAACTG. [132] Epichloe_glyceriae_Gs2 AGGCGGATCGAGAC.....AAAATTAAAGATTGCGGTATTCGAGAACTG. [132] Epichloe_sylvatica_Bs1 AGGCGGACCGAGAC.....AACATTAATGAATGCGGTATTCGAAAACCG. [132] Epichloe_sylvatica_Bs2 AGGCGGACCGAGAC.....AACATTAATGAATGCGGTATTCGAAAACCG. [133] Epichloe_typhina_Lp1 AGGCGGACCGAGAC.....AACATTGATGAATGCGGTATTCGAAAACCG. [133] Epichloe_typhina_Bp AGGCGGACCGAGAC.....AACATTAATGAATGCGGTATTCGAAAACCG. [133] Epichloe_typhina_Dg AGGCGGACCGAGAC.....AACATTGATGAATGCGGTATTCGAAAACCG. [133] Epichloe_typhina_Ps1 AGGCGGGCCGAGAC.....AACATTGATGAATGCTGTATTCGAAAACCG. [138] Epichloe_typhina_Pn1 AGGCGGACCGAGAC.....AACATCATTGAATGCGGTATTCGAGAACTG. [132] Epichloe_typhina_Pp1 AGGCGGACCGAGAC.....AACATCATTGAATGCGGTATTCGAGAACTG. [132] Epichloe_festucae_Fl1 AGGCGGACCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG. [132] Neotyphodium_x_schardlii_Ca1 AGGCGGACCGAGAC.....AACATCATTGAATGCGGTATTCGAGAACTG. [132] Neotyphodium_x_schardlii_Ca2 AGGCGGACCGAGAC.....AACATCATTGAATGCGGTATTCGAGAACTG. [132] Epichloe_typhina_Pp2 AGGCGGACCGAGAC.....AACATCATTGAATGCGGTATTCGAGAACTG. [132] Epichloe_typhina_Pn2 AGGCGGACCGAGAC.....AACATCATTGAATGCGGTATTCGAGAACTG. [132] Epichloe_typhina_Pt1 AGGCGGACCGAGAC.....AACATTGATGAACGCGGTATTCGAAAACCG. [133] Epichloe_typhina_Ao AGGCGGACCGAGAC.....AACATTGATGAACGCGGTATTCGAAAACCG. [133] Epichloe_typhina_Ae AGGCGGACCGAGAC.....AACATTGATGAATGCGGTATTCGAAAACCG. [133] Epichloe_typhina_Lp2 AGGCGGACCGAGAC.....AACATTGATGAATGCGGTATTCGAAAACCG. [133] Epichloe_typhina_Pn3 AGGCGGACCGAGAC.....AACATCATTGAATGCGGTATTCGAGAACTG. [132] Epichloe_typhina_Pt2 AGGCGGGCCGAGAC.....AACATTGATGAATGCTGTATTCGAAAACCG. [138] Epichloe_typhina_Ps2 AGGCGGGCCGAGAC.....AACATTGATGAATGCTGTATTCGAAAACCG. [138] Epichloe_typhina_Pt3 AGGCGGGCCGAGAC.....AACATTGATGAATGCTGTATTCGAAAACCG. [138] [ 160 170 180 190 200] [ . . . . .] Epichloe_amarillans_So TAGCTGACC...TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCA [179] Epichloe_amarillans_Ah TAGCTGACC...GTTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCA [179] Epichloe_baconii_Cv TAGCTGACC...TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCA [179] Epichloe_baconii_As TAGCTGACC...TGTTTCTTTCCCTCTTTTCACCTCTAGGTTCATCTTCA [179] Epichloe_baconii_At TAGCTGACC...TGTTTCTTTCCCTCTTTTCTCCTCTAGGTTCATCTTCA [179] Epichloe_brachyelytri_Bee1 TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [169] Epichloe_brachyelytri_Bee2 TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [169] Epichloe_bromicola_Be1 TAGCTGACC...TTTTCCT..........TCCCCTCTAGGTTCATCTTCA [172] Epichloe_bromicola_Be2 TAGCTGACC...TTTTCCT..........TCCCCTCTAGGTTCATCTTCA [174] Epichloe_clarkii_Hl TAGCTGACC..TTTTTTCTTT..........GCCTCTAGGTTCATCTTCA [171] Epichloe_elymi_Evr TAGCTGACC...TTTTTCT..........TCCCCTCTAGGTTCATCTTCA [173] Epichloe_elymi_Ec TAGCTGACC...TTTTTCT..........TCCCCTCTAGGTTCATCTTCA [173] Epichloe_festucae_Frr TAGCTGACC...TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCA [179] Epichloe_glyceriae_Gs1 TAGCTGACC...TTTTTCTTCCTCTCTTCTCCCCTCTAGGNNCATCNNNA [179] Epichloe_glyceriae_Gs2 TAGCTGACC...TTTTTCTTCCCCTCTTCTCCCCTCTAGGTTCATCTTCA [179] Epichloe_sylvatica_Bs1 TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [169] Epichloe_sylvatica_Bs2 TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [170] Epichloe_typhina_Lp1 TAGCTGACC..TTTTTTCTTT..........GCCTCTAGGTTCATCTTCA [171] Epichloe_typhina_Bp TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [170] Epichloe_typhina_Dg TAGCTGACC..TTTTTTCTTT..........GCCTCTAGGTTCATCTTCA [171] Epichloe_typhina_Ps1 TAGCTGACCTTTTTTTTCTTT..........GCCTCTAGGTTCATCTTCA [178] Epichloe_typhina_Pn1 TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [169] Epichloe_typhina_Pp1 TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [169] Epichloe_festucae_Fl1 TAGCTGACC...TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCA [179] Neotyphodium_x_schardlii_Ca1 TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [169] Neotyphodium_x_schardlii_Ca2 TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [169] Epichloe_typhina_Pp2 TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [169] Epichloe_typhina_Pn2 TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [169] Epichloe_typhina_Pt1 TAGCTGAC...TTTTTTATTT..........CCCTCTAGGTTCATCTTCA [170] Epichloe_typhina_Ao TAGCTGAC...TTTTTTATTT..........CCCTCTAGGTTCATCTTCA [170] Epichloe_typhina_Ae TAGCTGACC..TTTTTTCTTT..........GCCTCTAGGTTCATCTTCA [171] Epichloe_typhina_Lp2 TAGCTGACC..TTTTTTCTTT..........GCCTCTAGGTTCATCTTCA [171] Epichloe_typhina_Pn3 TAGCTGACC...TTTTTCTTT..........CCCTCTAGGTTCATCTTCA [169] Epichloe_typhina_Pt2 TAGCTGACCTTTTTTTTCTTT..........GCCTCTAGGTTCATCTTCA [178] Epichloe_typhina_Ps2 TAGCTGACCTTTTTTTTCTTT..........GCCTCTAGGTTCATCTTCA [178] Epichloe_typhina_Pt3 TAGCTGACCTTTTTTTTCTTT..........GCCTCTAGGTTCATCTTCA [178] [ 210 220 230 240 250] [ . . . . .] Epichloe_amarillans_So AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [228] Epichloe_amarillans_Ah AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [228] Epichloe_baconii_Cv AACCGGTCAGTGCGTAAGTGACAAATcCGCCGACCTCAAACGAC.GGGCA [228] Epichloe_baconii_As AACCGGTCAGTGCGTAAGTGACAAAT.CGCCGACCTCGAACGAC.AGGCA [227] Epichloe_baconii_At AACCGGTCAGTGCGTAAGTGACAAAT.CGCCGACCTCGAACGAC.AGGCA [227] Epichloe_brachyelytri_Bee1 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGGACGAC.AGGCA [218] Epichloe_brachyelytri_Bee2 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGGACGAC.AGGCA [218] Epichloe_bromicola_Be1 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [221] Epichloe_bromicola_Be2 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTTGAACGAC.AGGCA [223] Epichloe_clarkii_Hl AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [220] Epichloe_elymi_Evr AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTAGAACGAC.GGGCA [222] Epichloe_elymi_Ec AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTAGAACGAC.GGGCA [222] Epichloe_festucae_Frr AACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAACGAC.AGGCA [228] Epichloe_glyceriae_Gs1 AACCGGTCAGTGCGTAAGTGACAAATTCGCCGANCTCGAGCGAC.AGGCA [228] Epichloe_glyceriae_Gs2 AACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAGCGAC.AGGCA [228] Epichloe_sylvatica_Bs1 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [218] Epichloe_sylvatica_Bs2 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [219] Epichloe_typhina_Lp1 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [220] Epichloe_typhina_Bp AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [219] Epichloe_typhina_Dg AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [220] Epichloe_typhina_Ps1 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [227] Epichloe_typhina_Pn1 AACCGGTCAGTGCGTAAGTGACAAATCTGCCGACCTCGAACGAC.AGGCA [218] Epichloe_typhina_Pp1 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [218] Epichloe_festucae_Fl1 AACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAACGAC.AGGCA [228] Neotyphodium_x_schardlii_Ca1 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [218] Neotyphodium_x_schardlii_Ca2 AACCGGTCAGTGCGTAAGTGACAAATCTGCCGACCTCGAACGAC.AGGCA [218] Epichloe_typhina_Pp2 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [218] Epichloe_typhina_Pn2 AACCGGTCAGTGCGTAAGTGACAAATCTGCCGACCTCGAACGAC.AGGCA [218] Epichloe_typhina_Pt1 AACCGGCCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGACAAGGCA [220] Epichloe_typhina_Ao AACCGGCCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGACAAGGCA [220] Epichloe_typhina_Ae AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [220] Epichloe_typhina_Lp2 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [220] Epichloe_typhina_Pn3 AACCGGTCAGTGCGTAAGTGACAAATCTGCCGACCTCGAACGAC.AGGCA [218] Epichloe_typhina_Pt2 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [227] Epichloe_typhina_Ps2 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [227] Epichloe_typhina_Pt3 AACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCA [227] [ 260 270 280 290 300] [ . . . . .] Epichloe_amarillans_So CAAACA..GCATG.AAAAACTCACATTCATTTGGGCAGGGTAACCAAATT [275] Epichloe_amarillans_Ah CAAACA..ACATG.AAAAACTCACATTCATTTGGGCAGGGTAACCAAATT [275] Epichloe_baconii_Cv CAAACA..GCATG.AAAAACTCACATTCATN~NGGCAGGGTAACCAAATT [275] Epichloe_baconii_As CAAACA..GCATG.AAAAACTCACATTCTTTTGGGCAGGGTAACCAAATT [274] Epichloe_baconii_At CAAACA..GCATG.AAAAACTCACATTCTTTTGGGCAGGGTAACCAAATT [274] Epichloe_brachyelytri_Bee1 CAAATA..ACATG.AAAAACTCACATTTATTTGGGCAGGGTAACCAAATT [265] Epichloe_brachyelytri_Bee2 CAAATA..ACATG.AAAAACTCACATTTATTTGGGCAGGGTAACCAAATT [265] Epichloe_bromicola_Be1 CAAATAACACATG.GAAAACTCACATTTCTTTGGGCAGGGTAACCAAATT [270] Epichloe_bromicola_Be2 CAAACAACACATG.AAAAACTCACATTTCTTTGGGCAGGGTAACCAAATT [272] Epichloe_clarkii_Hl CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [267] Epichloe_elymi_Evr CAAATA..ACATG.AAAAACTCACATTTATTTGGGCAGGGTAACCAAATT [269] Epichloe_elymi_Ec CAAATA..ACATG.AAAAACTCACATTTATTTGGGCAGGGTAACCAAATT [269] Epichloe_festucae_Frr CAAACA..GCATG.AAAAACTCACATTCATTTGGGCAGGGTAACCAAATT [275] Epichloe_glyceriae_Gs1 CCAATA..ACATG.AAAAACTCACATTTATTTGGGCAGGGTAACCAAATT [275] Epichloe_glyceriae_Gs2 CCAATA..ACATG.AAAAACTCACATTTATTTGGGCAGGGTAACCAAATT [275] Epichloe_sylvatica_Bs1 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [265] Epichloe_sylvatica_Bs2 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [266] Epichloe_typhina_Lp1 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [267] Epichloe_typhina_Bp CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [266] Epichloe_typhina_Dg CAAATA..ACATGAAAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [268] Epichloe_typhina_Ps1 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [274] Epichloe_typhina_Pn1 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [265] Epichloe_typhina_Pp1 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [265] Epichloe_festucae_Fl1 CAAACA..GCATG.AAAAACTCACATTCATTTGGGCAGGGTAACCAAATT [275] Neotyphodium_x_schardlii_Ca1 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [265] Neotyphodium_x_schardlii_Ca2 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [265] Epichloe_typhina_Pp2 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [265] Epichloe_typhina_Pn2 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [265] Epichloe_typhina_Pt1 CAGATA..ACATG.AAAAACTCACATTGACTTGGGCAGGGTAACCAAATT [267] Epichloe_typhina_Ao CAGATA..ACATG.AAAAACTCACATTGACTTGGGCAGGGTAACCAAATT [267] Epichloe_typhina_Ae CAAATA..ACATGAAAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [268] Epichloe_typhina_Lp2 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [267] Epichloe_typhina_Pn3 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [265] Epichloe_typhina_Pt2 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [274] Epichloe_typhina_Ps2 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [274] Epichloe_typhina_Pt3 CAAATA..ACATG.AAAAACTCACATTGATTTGGGCAGGGTAACCAAATT [274] [ 310 320 330 340 350] [ . . . . .] Epichloe_amarillans_So GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [325] Epichloe_amarillans_Ah GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [325] Epichloe_baconii_Cv GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [325] Epichloe_baconii_As GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [324] Epichloe_baconii_At GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [324] Epichloe_brachyelytri_Bee1 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [315] Epichloe_brachyelytri_Bee2 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [315] Epichloe_bromicola_Be1 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAA [320] Epichloe_bromicola_Be2 GGTGCTGCTTTCTGGCAGACCATCTCTTGCGAGCACGGTCTCGACAGCAA [322] Epichloe_clarkii_Hl GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [317] Epichloe_elymi_Evr GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [319] Epichloe_elymi_Ec GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [319] Epichloe_festucae_Frr GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [325] Epichloe_glyceriae_Gs1 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [325] Epichloe_glyceriae_Gs2 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [325] Epichloe_sylvatica_Bs1 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [315] Epichloe_sylvatica_Bs2 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [316] Epichloe_typhina_Lp1 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [317] Epichloe_typhina_Bp GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [316] Epichloe_typhina_Dg GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [318] Epichloe_typhina_Ps1 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [324] Epichloe_typhina_Pn1 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [315] Epichloe_typhina_Pp1 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [315] Epichloe_festucae_Fl1 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [325] Neotyphodium_x_schardlii_Ca1 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [315] Neotyphodium_x_schardlii_Ca2 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [315] Epichloe_typhina_Pp2 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [315] Epichloe_typhina_Pn2 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [315] Epichloe_typhina_Pt1 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [317] Epichloe_typhina_Ao GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [317] Epichloe_typhina_Ae GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [318] Epichloe_typhina_Lp2 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [317] Epichloe_typhina_Pn3 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [315] Epichloe_typhina_Pt2 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [324] Epichloe_typhina_Ps2 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [324] Epichloe_typhina_Pt3 GGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA [324] [ 360 370 380 390 400] [ . . . . .] Epichloe_amarillans_So TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCT [375] Epichloe_amarillans_Ah TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCT [375] Epichloe_baconii_Cv TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [375] Epichloe_baconii_As TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [374] Epichloe_baconii_At TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [374] Epichloe_brachyelytri_Bee1 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [365] Epichloe_brachyelytri_Bee2 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [365] Epichloe_bromicola_Be1 TGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCT [370] Epichloe_bromicola_Be2 TGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCT [372] Epichloe_clarkii_Hl TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [367] Epichloe_elymi_Evr TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCT [369] Epichloe_elymi_Ec TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCT [369] Epichloe_festucae_Frr TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [375] Epichloe_glyceriae_Gs1 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [375] Epichloe_glyceriae_Gs2 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [375] Epichloe_sylvatica_Bs1 TGGTGTGTACAATGGTACCTCGGAGCTCCAGCTCGAGCGCATGAGTGTCT [365] Epichloe_sylvatica_Bs2 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [366] Epichloe_typhina_Lp1 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [367] Epichloe_typhina_Bp TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [366] Epichloe_typhina_Dg TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [368] Epichloe_typhina_Ps1 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [374] Epichloe_typhina_Pn1 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [365] Epichloe_typhina_Pp1 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [365] Epichloe_festucae_Fl1 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [375] Neotyphodium_x_schardlii_Ca1 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [365] Neotyphodium_x_schardlii_Ca2 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [365] Epichloe_typhina_Pp2 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [365] Epichloe_typhina_Pn2 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [365] Epichloe_typhina_Pt1 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [367] Epichloe_typhina_Ao TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [367] Epichloe_typhina_Ae TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [368] Epichloe_typhina_Lp2 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [367] Epichloe_typhina_Pn3 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [365] Epichloe_typhina_Pt2 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [374] Epichloe_typhina_Ps2 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [374] Epichloe_typhina_Pt3 TGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCT [374] [ 410 420 430 440 450] [ . . . . .] Epichloe_amarillans_So ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTAC [422] Epichloe_amarillans_Ah ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTAC [422] Epichloe_baconii_Cv ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTAC [422] Epichloe_baconii_As ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCGTTGAGCTAC [421] Epichloe_baconii_At ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCGTTGAGCTAC [421] Epichloe_brachyelytri_Bee1 ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTA. [411] Epichloe_brachyelytri_Bee2 ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTA. [411] Epichloe_bromicola_Be1 ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTG. [416] Epichloe_bromicola_Be2 ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTA. [418] Epichloe_clarkii_Hl ACTTCAACGAGGCAAGTCTTCATAATCTACAAAAGTCTCCATTGAGCTA. [416] Epichloe_elymi_Evr ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTA. [415] Epichloe_elymi_Ec ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTA. [415] Epichloe_festucae_Frr ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTAC [422] Epichloe_glyceriae_Gs1 ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTAT [422] Epichloe_glyceriae_Gs2 ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTAT [422] Epichloe_sylvatica_Bs1 ACTTCAACGAGGCAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTA. [411] Epichloe_sylvatica_Bs2 ACTTCAACGAGGCAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTA. [412] Epichloe_typhina_Lp1 ACTTCAACGAGGCAAGTCTTCATAATCTACAAAAGTCTCCATTGAGCTA. [416] Epichloe_typhina_Bp ACTTCAACGAGGCAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTA. [412] Epichloe_typhina_Dg ACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCTATTGAGCTA. [417] Epichloe_typhina_Ps1 ACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCCCCATTGAGCTA. [423] Epichloe_typhina_Pn1 ACTTCAACGAGGCAAGTCT...................CCATTGAGCTA. [395] Epichloe_typhina_Pp1 ACTTCAACGAGGCAAGTCT...................CCATTGAGCTA. [395] Epichloe_festucae_Fl1 ACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTAC [422] Neotyphodium_x_schardlii_Ca1 ACTTCAACGAGGCAAGTCT...................CCATTGAGCTA. [395] Neotyphodium_x_schardlii_Ca2 ACTTCAACGAGGCAAGTCT...................CCATTGAGCTA. [395] Epichloe_typhina_Pp2 ACTTCAACGAGGCAAGTCT...................CCATTGAGCTA. [395] Epichloe_typhina_Pn2 ACTTCAACGAGGCAAGTCT...................CCATTGAGCTA. [395] Epichloe_typhina_Pt1 ACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTA. [416] Epichloe_typhina_Ao ACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTA. [416] Epichloe_typhina_Ae ACTTCAACGAGGCAAGTCTTCAAAATCTAAAAAAGTCTCCATTGAGCTA. [417] Epichloe_typhina_Lp2 ACTTCAACGAGGCAAGTCTTCATAATCTACAAAAGTCTCCATTGAGCTA. [416] Epichloe_typhina_Pn3 ACTTCAACGAGGCAAGTCT...................CCATTGAGCTA. [395] Epichloe_typhina_Pt2 ACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCCCCATTGAGCTA. [423] Epichloe_typhina_Ps2 ACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCCCCATTGAGCTA. [423] Epichloe_typhina_Pt3 ACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCCCCATTGAGCTA. [423] [ 460 470 480 490 500] [ . . . . .] Epichloe_amarillans_So ATACATACCGCCCCGGAGATGAGACGGAAAGAGAACGAGAGAAAAAGTGT [472] Epichloe_amarillans_Ah ATACATACCGCCCCGGAGATGAGACGGAAAGAGAACGAGAGAAAAAGTGT [472] Epichloe_baconii_Cv ATACATACCGCCCCGGAGATGAGACGGGAAGAGAACGAAAGAAAAAGTGT [472] Epichloe_baconii_As ATACATACCGCCCCGGAGATGAGACGGAAAAAGAACGAAAGAAAAAGTGC [471] Epichloe_baconii_At ATACATACCGCCCCGGAGATGAGACGGAAAAAGAACGAAAGAAAAAGTGC [471] Epichloe_brachyelytri_Bee1 ...CATACCGCCCTGGAGATGAGACGGAAAGAGAAGGAAAGAAAAAGTGT [458] Epichloe_brachyelytri_Bee2 ...CACACCGCCCTGGAGATGAGACGGAAAGAGAAGGAAAGAAAAAGTGT [458] Epichloe_bromicola_Be1 ...CATACCGCCCTGGAGATGAGACGGAAAGAGAACG..ATAAAAAGTGT [461] Epichloe_bromicola_Be2 ...CATACCGCCCTGGAGATGAGACGGAAAGAGAACG..ATAAAAAGTGT [463] Epichloe_clarkii_Hl ...CATACTGCCCTGGAGATGGGGCGGGAGAAGATGGAAAGGAAAAGTGT [463] Epichloe_elymi_Evr ...CATACCGCCCTGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGT [462] Epichloe_elymi_Ec ...CATACCGCCCTGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGT [462] Epichloe_festucae_Frr ATACATACCGCCCCGGAGATGGGACGGAAAGAGAACGAAAGAAAAAGTGT [472] Epichloe_glyceriae_Gs1 ....ATACCGCCCTGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGT [468] Epichloe_glyceriae_Gs2 ....ATACCGCCCTGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGT [468] Epichloe_sylvatica_Bs1 ...CATACCGCCCTGGAGATGGGACGGAAAAAGAAGGAAAGAAAAAGTGT [458] Epichloe_sylvatica_Bs2 ...CATACCGCCCTGGAGATGGGACGGAAAAAGAAGGAAAGAAAAAGTGT [459] Epichloe_typhina_Lp1 ...CATACTGCCCTGGAGATGGGGCGGGAGAAGATGGAAAGGAAAAGTGT [463] Epichloe_typhina_Bp ...CATACCGCCCTGGAGATGGGACGGAAAAAGAGGGAAAGAAAAAGTGT [459] Epichloe_typhina_Dg ...CATACCGCCCCGGAGATGGGACGGGAAAAGAAGCAAATAAAACGTGT [464] Epichloe_typhina_Ps1 ...CATACCGCCCTGGAGATTGGACAGGAAAAGATGGAAAGAAAAAGTGC [470] Epichloe_typhina_Pn1 ...CATACCGCCCTGGAGATGGGACGGAAAAAGAAGGAAAGAAAAAGTGT [442] Epichloe_typhina_Pp1 ...CATACCGCCCTGGAGATGAGACGGAAAGAGAAGGAAAGAAAAAGTGT [442] Epichloe_festucae_Fl1 ATACATACCGCCCCGGAGATGGGACGGAAAGAGAACGAAAGAAAAAGTGT [472] Neotyphodium_x_schardlii_Ca1 ...CATACCGCCCTGGAGATGAGACGGAAAGAGAAGGAAAGAAAAAGTGT [442] Neotyphodium_x_schardlii_Ca2 ...CATACCGCCCTGGAGATGGGACGGAAAAAGAAGGAAAGAAAAAGTGT [442] Epichloe_typhina_Pp2 ...CATACCGCCCTGGAGATGAGACGGAAAGAGAAGGAAAGAAAAAGTGT [442] Epichloe_typhina_Pn2 ...CATACCGCCCTGGAGATGGGACGGAAAAAGAAGGAAAGAAAAAGTGT [442] Epichloe_typhina_Pt1 ...CATACCGCCCTGGAGATGGGACGGGAAAAGAAGCGAAGAAAAAGTAT [463] Epichloe_typhina_Ao ...CATACCGCCCTGGAGATGGGACGGGAAAAGAAGCGAAGAAAAAGTAT [463] Epichloe_typhina_Ae ...CATACCGCCCTGGAGATGGGACGGGAAAAGAAGCGAAGAAAAAGTAT [464] Epichloe_typhina_Lp2 ...CATACTGCCCTGGAGATGGGGCGGGAGAAGATGGAAAGGAAAAGTGT [463] Epichloe_typhina_Pn3 ...CATACCGCCCTGGAGATGGGACGGAAAAAGAAGGAAAGAAAAAGTGT [442] Epichloe_typhina_Pt2 ...CATACCGCCCTGGAGATTGGACAGGAAAAGATGGAAAGAAAAAGTGC [470] Epichloe_typhina_Ps2 ...CATACCGCCCTGGAGATTGGACAGGAAAAGATGGAAAGAAAAAGTGC [470] Epichloe_typhina_Pt3 ...CATACCGCCCTGGAGATTGGACAGGAAAAGATGGAAAGAAAAAGTGC [470] [ 510 520 ] [ . . ] Epichloe_amarillans_So CATC..ATGCTCATCCATGTGACAG [495] Epichloe_amarillans_Ah CATC..ATGCTCATCCATGTGACAG [495] Epichloe_baconii_Cv TATC..ATGCTCATCCATGTGACAG [495] Epichloe_baconii_As TATC..ATGCTCATCCATGTGACAG [494] Epichloe_baconii_At TATC..ATGCTCATCCATGTGACAG [494] Epichloe_brachyelytri_Bee1 CATC..ATGCTAATCTATGTGACAG [481] Epichloe_brachyelytri_Bee2 CATC..ATGCTAATCTATGTGACAG [481] Epichloe_bromicola_Be1 ..TAACATGCTAATCTATGTGACAG [484] Epichloe_bromicola_Be2 ..TAACATGCTAATCTATGTGACAG [486] Epichloe_clarkii_Hl TATC..ATGCTAATCTATGTGACAG [486] Epichloe_elymi_Evr CATCATATGCTAATCTATGTGACAG [487] Epichloe_elymi_Ec CATCATATGCTAATCTATGTGACAG [487] Epichloe_festucae_Frr TATC..ATGCTCATCCATGTGACAG [495] Epichloe_glyceriae_Gs1 CAT.A.ATGCTAATCTATGTGACAG [491] Epichloe_glyceriae_Gs2 CAT.A.ATGCTAATCTATGTGACAG [491] Epichloe_sylvatica_Bs1 TATC..ATGCTAATCTATGTGACAG [481] Epichloe_sylvatica_Bs2 TATC..ATGCNNATCTATGTGACAG [482] Epichloe_typhina_Lp1 TATC..ATGCTAATCTATGTGACAG [486] Epichloe_typhina_Bp TATC..ATGCTAATCTATGTGACAG [482] Epichloe_typhina_Dg TATC..ATGCTAATCTATGTGACAG [487] Epichloe_typhina_Ps1 CATC..ATGCTAATCTATGTGACAG [493] Epichloe_typhina_Pn1 TATC..ATGCTAATCTATGTGACAG [465] Epichloe_typhina_Pp1 TATC..ATGCTAATCTATGTGACAG [465] Epichloe_festucae_Fl1 TATC..ATGCTCATCCATGTGACAG [495] Neotyphodium_x_schardlii_Ca1 TATC..ATGCTAATCTATGTGACAG [465] Neotyphodium_x_schardlii_Ca2 TATC..ATGCTAATCTATGTGACAG [465] Epichloe_typhina_Pp2 TATC..ATGCTAATCTATGTGACAG [465] Epichloe_typhina_Pn2 TATC..ATGCTAATCTATGTGACAG [465] Epichloe_typhina_Pt1 TATC..ATGCTAATCTATGTGACAG [486] Epichloe_typhina_Ao TATC..ATGCTAATCTATGTGACAG [486] Epichloe_typhina_Ae TATC..ATGCTAATCTATGTGACAG [487] Epichloe_typhina_Lp2 TATC..ATGCTAATCTATGTGACAG [486] Epichloe_typhina_Pn3 TATC..ATGCTAATCTATGTGACAG [465] Epichloe_typhina_Pt2 CATC..ATGCTAATCTATGTGACAG [493] Epichloe_typhina_Ps2 CATC..ATGCTAATCTATGTGACAG [493] Epichloe_typhina_Pt3 CATC..ATGCTAATCTATGTGACAG [493] ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1-525; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END; BEGIN MacClade; Version 4.0 87; LastModified -940355310; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '24' Geneva '9' '170' '1' all; EditorPosition '48' '139' '819' '625'; TreeWindowPosition '46' '6' '915' '1230'; ListWindow Characters closed Geneva '9' '50' '10' '273' '399' 000; ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; 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