#NEXUS 

Begin trees;  [Treefile saved Tuesday, April 20, 2010  1:52 PM]
[!
>Data file = Sita_tef_final.txt
>Branch-and-bound search settings:
>  Optimality criterion = parsimony
>    Character-status summary:
>      Of 777 total characters:
>        All characters are of type 'unord'
>        All characters have equal weight
>        638 characters are constant
>        28 variable characters are parsimony-uninformative
>        Number of parsimony-informative characters = 111
>    Gaps are treated as "missing"
>  Initial upper bound: unknown (compute heuristically)
>  Addition sequence: simple
>  Initial 'MaxTrees' setting = 100 (will be auto-increased by 100)
>  Branches collapsed (creating polytomies) if maximum branch length is zero
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>Branch-and-bound search completed:
>   Score of best tree found = 172
>   Number of trees retained = 24
>   Time used = 4.83 sec
]
	Translate
		1 Epichloe_amarillans_So,
		2 Epichloe_amarillans_Ah,
		3 Epichloe_baconii_Cv,
		4 Epichloe_baconii_As,
		5 Epichloe_baconii_At,
		6 Epichloe_brachyelytri_Bee1,
		7 Epichloe_brachyelytri_Bee2,
		8 Epichloe_bromicola_Be1,
		9 Epichloe_bromicola_Be2,
		10 Epichloe_clarkii_Hl,
		11 Epichloe_elymi_Evr,
		12 Epichloe_elymi_Ec,
		13 Epichloe_festucae_Frr,
		14 Epichloe_glyceriae_Gs1,
		15 Epichloe_glyceriae_Gs2,
		16 Epichloe_sylvatica_Bs1,
		17 Epichloe_sylvatica_Bs2,
		18 Epichloe_typhina_Lp1,
		19 Epichloe_typhina_Bp1,
		20 Epichloe_typhina_Dg1,
		21 Epichloe_typhina_Ps1,
		22 Epichloe_typhina_Pn1,
		23 Epichloe_typhina_Pp1,
		24 Neotyphodium_x_schardlii_Ca1,
		25 Neotyphodium_x_schardlii_Ca2,
		26 Epichloe_typhina_Pp2,
		27 Epichloe_typhina_Pp3,
		28 Epichloe_typhina_Pn2,
		29 Epichloe_typhina_Pn3,
		30 Epichloe_typhina_Ps2,
		31 Epichloe_typhina_Pp4,
		32 Epichloe_typhina_Pp5,
		33 Epichloe_typhina_Dg2,
		34 Epichloe_typhina_Bp2,
		35 Epichloe_typhina_Bp3,
		36 Epichloe_typhina_Ao,
		37 Epichloe_typhina_Lp2,
		38 Epichloe_typhina_Lp3
		;
tree PAUP_1 = [&U] (1,(2,(((3,(((6,7),((8,9),(11,12))),((((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))),(14,15)))),(4,5)),13)));
tree PAUP_2 = [&U] (1,(2,(((3,(((6,7),((8,9),(11,12))),((((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))),(14,15)))),(4,5)),13)));
tree PAUP_3 = [&U] (1,(2,((3,(((6,7),((8,9),(11,12))),((((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))),(14,15)))),((4,5),13))));
tree PAUP_4 = [&U] (1,(2,((3,(((6,7),((8,9),(11,12))),((((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))),(14,15)))),((4,5),13))));
tree PAUP_5 = [&U] (1,(2,((3,(((6,7),((8,9),(11,12))),((((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))),(14,15)))),(4,5),13)));
tree PAUP_6 = [&U] (1,(2,((3,(((6,7),((8,9),(11,12))),((((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))),(14,15)))),(4,5),13)));
tree PAUP_7 = [&U] (1,(2,(((3,(((6,7),(((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24)))),(((8,9),(11,12)),(14,15)))),(4,5)),13)));
tree PAUP_8 = [&U] (1,(2,(((3,(((6,7),(((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24)))),(((8,9),(11,12)),(14,15)))),(4,5)),13)));
tree PAUP_9 = [&U] (1,(2,((3,(((6,7),(((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24)))),(((8,9),(11,12)),(14,15)))),((4,5),13))));
tree PAUP_10 = [&U] (1,(2,((3,(((6,7),(((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24)))),(((8,9),(11,12)),(14,15)))),((4,5),13))));
tree PAUP_11 = [&U] (1,(2,((3,(((6,7),(((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24)))),(((8,9),(11,12)),(14,15)))),(4,5),13)));
tree PAUP_12 = [&U] (1,(2,((3,(((6,7),(((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24)))),(((8,9),(11,12)),(14,15)))),(4,5),13)));
tree PAUP_13 = [&U] (1,(2,(((3,(((6,7),(((8,9),(11,12)),(14,15))),(((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),(4,5)),13)));
tree PAUP_14 = [&U] (1,(2,(((3,(((6,7),(((8,9),(11,12)),(14,15))),(((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),(4,5)),13)));
tree PAUP_15 = [&U] (1,(2,((3,(((6,7),(((8,9),(11,12)),(14,15))),(((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),((4,5),13))));
tree PAUP_16 = [&U] (1,(2,((3,(((6,7),(((8,9),(11,12)),(14,15))),(((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),((4,5),13))));
tree PAUP_17 = [&U] (1,(2,((3,(((6,7),(((8,9),(11,12)),(14,15))),(((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),(4,5),13)));
tree PAUP_18 = [&U] (1,(2,((3,(((6,7),(((8,9),(11,12)),(14,15))),(((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),(4,5),13)));
tree PAUP_19 = [&U] (1,(2,(((3,((((6,7),((8,9),(11,12))),(14,15)),(((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),(4,5)),13)));
tree PAUP_20 = [&U] (1,(2,(((3,((((6,7),((8,9),(11,12))),(14,15)),(((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),(4,5)),13)));
tree PAUP_21 = [&U] (1,(2,((3,((((6,7),((8,9),(11,12))),(14,15)),(((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),((4,5),13))));
tree PAUP_22 = [&U] (1,(2,((3,((((6,7),((8,9),(11,12))),(14,15)),(((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),((4,5),13))));
tree PAUP_23 = [&U] (1,(2,((3,((((6,7),((8,9),(11,12))),(14,15)),(((10,(((18,37,38),(20,33),36),(21,30,32)),31),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),(4,5),13)));
tree PAUP_24 = [&U] (1,(2,((3,((((6,7),((8,9),(11,12))),(14,15)),(((10,((((18,37,38),(20,33),36),(21,30,32)),31)),(16,17,((19,35),34))),(((22,28,29),25),(((23,27),26),24))))),(4,5),13)));
End;