#NEXUS 

Begin trees;  [Treefile saved Tuesday, April 20, 2010  2:27 PM]
[!
>Data file = Sita_tub2_final.txt
>Branch-and-bound search settings:
>  Optimality criterion = parsimony
>    Character-status summary:
>      Of 525 total characters:
>        All characters are of type 'unord'
>        All characters have equal weight
>        435 characters are constant
>        14 variable characters are parsimony-uninformative
>        Number of parsimony-informative characters = 76
>    Gaps are treated as "missing"
>    Multistate taxa interpreted as uncertainty
>  Initial upper bound: unknown (compute heuristically)
>  Addition sequence: simple
>  Initial 'MaxTrees' setting = 100 (will be auto-increased by 100)
>  Branches collapsed (creating polytomies) if maximum branch length is zero
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>Branch-and-bound search completed:
>   Score of best tree found = 121
>   Number of trees retained = 4
>   Time used = 00:01:25.2
]
	Translate
		1 Epichloe_amarillans_So,
		2 Epichloe_amarillans_Ah,
		3 Epichloe_baconii_Cv,
		4 Epichloe_baconii_As,
		5 Epichloe_baconii_At,
		6 Epichloe_brachyelytri_Bee1,
		7 Epichloe_brachyelytri_Bee2,
		8 Epichloe_bromicola_Be1,
		9 Epichloe_bromicola_Be2,
		10 Epichloe_clarkii_Hl,
		11 Epichloe_elymi_Evr,
		12 Epichloe_elymi_Ec,
		13 Epichloe_festucae_Frr,
		14 Epichloe_glyceriae_Gs1,
		15 Epichloe_glyceriae_Gs2,
		16 Epichloe_sylvatica_Bs1,
		17 Epichloe_sylvatica_Bs2,
		18 Epichloe_typhina_Lp1,
		19 Epichloe_typhina_Bp,
		20 Epichloe_typhina_Dg,
		21 Epichloe_typhina_Ps1,
		22 Epichloe_typhina_Pn1,
		23 Epichloe_typhina_Pp1,
		24 Epichloe_festucae_Fl1,
		25 Neotyphodium_x_schardlii_Ca1,
		26 Neotyphodium_x_schardlii_Ca2,
		27 Epichloe_typhina_Pp2,
		28 Epichloe_typhina_Pn2,
		29 Epichloe_typhina_Pt1,
		30 Epichloe_typhina_Ao,
		31 Epichloe_typhina_Ae,
		32 Epichloe_typhina_Lp2,
		33 Epichloe_typhina_Pn3,
		34 Epichloe_typhina_Pt2,
		35 Epichloe_typhina_Ps2,
		36 Epichloe_typhina_Pt3
		;
tree PAUP_1 = [&U] (1,(2,((3,((4,5),(13,24))),(((6,7),(((((10,18,32),(21,(34,35,36))),(20,((29,30),31))),16,(17,19)),((22,26,28,33),23,25,27))),(((8,9),(11,12)),(14,15))))));
tree PAUP_2 = [&U] (1,(2,((3,(4,5),(13,24)),(((6,7),(((((10,18,32),(21,(34,35,36))),(20,((29,30),31))),16,(17,19)),((22,26,28,33),23,25,27))),(((8,9),(11,12)),(14,15))))));
tree PAUP_3 = [&U] (1,(2,((3,((4,5),(13,24))),(((6,7),(((((10,18,32),(21,(34,35,36))),(20,((29,30),31))),16,(17,19)),((22,26,28,33),(23,25,27)))),(((8,9),(11,12)),(14,15))))));
tree PAUP_4 = [&U] (1,(2,((3,(4,5),(13,24)),(((6,7),(((((10,18,32),(21,(34,35,36))),(20,((29,30),31))),16,(17,19)),((22,26,28,33),(23,25,27)))),(((8,9),(11,12)),(14,15))))));
End;