#NEXUS [written Mon Mar 21 10:13:00 EDT 2011 by Mesquite version 2.73 (build 544) at ComPhy.local/192.168.7.217] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=81; TAXLABELS Phaeobotryon_mamane_CPC12443_EU673300 Phaeobotryon_mamane_CPC12445_EU673302 Lasiodiplodia_mahajangana_CBS124927_FJ900643 Lasiodiplodia_mahajangana_CBS124925_FJ900641 Lasiodiplodia_iraniensis_IRAN1520C_GU945336 Lasiodiplodia_iraniensis_IRAN1502C_GU945335 Lasiodiplodia_iraniensis_WAC13297_HM218823 Lasiodiplodia_iraniensis_WAC13290_HM218824 Lasiodiplodia_sp.1_WAC13300_GU172409 Lasiodiplodia_sp.1_WAC13280_GU172408 Lasiodiplodia_pseudotheobromae_CBS304.79_EF622061 Lasiodiplodia_pseudotheobromae_CBS447.62_EF622060 Lasiodiplodia_pseudotheobromae_WAC13281_GU172412 Lasiodiplodia_sp.2_MUCC741_GU199411 Lasiodiplodia_parva_CBS495.78_EF622065 Lasiodiplodia_parva_CBS494.78_EF622064 Lasiodiplodia_hormozganiensis_MUCC738_GU199408 Lasiodiplodia_hormozganensis_CBS124708_GU945344 Lasiodiplodia_hormozganensis_CBS124709_GU945343 Lasiodiplodia_citricola_CBS124706_GU945339 Lasiodiplodia_citricola_CBS124707_GU945340 Lasiodiplodia_plurivora_CBS120832_EF445395 Lasiodiplodia_plurivora_CBS121103_EF445396 Lasiodiplodia_gilanensis_CBS12475_GU945341 Lasiodiplodia_gilanensis_CBS124704_GU945342 Lasiodiplodia_crassispora_CBS118741_DQ103557 Lasiodiplodia_crassispora_CMW14688_DQ103558 Lasiodiplodia_venezueliensis_CMW13511_DQ103568 Lasiodiplodia_venezueliensis_CMW13512_DQ103569 Lasiodiplodia_vgonubiensis_CBS115812_DQ103566 Lasiodiplodia_gonubiensis_CBS116355_DQ103567 Lasiodiplodia_rubropurpurea_WAC12538_DQ103574 Lasiodiplodia_rubropurpurea_CBS118740_DQ103571 Neoscytalidium_novaehollandiae_WAC13289_GU127427 Neoscytalidium_novaehollandiae_WAC12691_EF585574 Neoscytalidium_novaehollandiae_WAC13273_GU172429 Neoscytalidium_novaehollandiae_WAC13296_GU172424 Neoscytalidium_novaehollandiae_WAC13288_GU172426 Neoscytalidium_novaehollandiae_WAC13303_GU172430 Neoscytalidium_novaehollandiae_WAC13304_GU172431 Neoscytalidium_novaehollandiae_WAC13275_GU172432 Neoscytalidium_novaehollandiae_WAC13291_GU172428 Neoscytalidium_novaehollandiae_WAC13286_GU172425 Neoscytalidium_novaehollandiae_WAC12688_EF585575 Neoscytalidium_novaehollandiae_CMW26168_EF585578 Neoscytalidium_novaehollandiae_CMW26169_EF585579 Neoscytalidium_dimidiatum_WAC12690_EF585577 Neoscytalidium_dimidiatum_WAC12693_EF585576 Neoscytalidium_dimidiatum_WAC13277_GU172420 Neoscytalidium_dimidiatum_WAC13274_GU172423 Neoscytalidium_dimidiatum_WAC13276_GU172421 Neoscytalidium_dimidiatum_WAC13301_GU172416 Neoscytalidium_dimidiatum_WAC13287_GU172417 Neoscytalidium_dimidiatum_WAC13305_GU172422 Neoscytalidium_dimidiatum_WAC13284_GU172414 Neoscytalidium_dimidiatum_WAC13285_GU172415 Neoscytalidium_dimidiatum_CBS204.33_EU144064 Neoscytalidium_dimidiatum_CBS499.66_EU144063 Neofusicoccum_luteum_CMW9076_AY236893 Neofusicoccum_australe_CMW9072_AY339268 Neofusococcum_ribis_CMW7054_AY236789 Neofusicoccum_parvum_CMW9081_AY236888 Neofusicoccum_mangiferum_CMW7024_AY236879 Pseudofusicoccum_stromaticum_CMW13434_AY693975 Pseudofusicoccum_stromaticum_CMW13435_DQ436936 Pseudofusicoccum_adansoniae_CMW26146_EF585570 Pseudofusicoccum_adansoniae_CMW26147_EF585571 Pseudofusicoccum_adansoniae_WAC13299_GU172436 Pseudofusicoccum_adansoniae_WAC12689_EF585567 Pseudofusicoccum_adansoniae_WAC13292_GU172433 Pseudofusicoccum_adansoniae_WAC13278_GU172434 Pseudofusicoccum_adansoniae_WAC13295_GU172435 Pseudofusicoccum_adansoniae_MUCC525_EU585573 Pseudofusicoccum_kimberleyense_CMW26158_EU144073 Pseudofusicoccum_kimberleyense_WAC13293_GU172438 Pseudofusicoccum_kimberleyense_CMW26156_EU144072 Pseudofusicoccum_kimberleyense_WAC13298_GU172439 Pseudofusicoccum_kimberleyense_MUCC742_GU199412 Pseudofusicoccum_ardesiacum_CMW26155_EU144076 Pseudofusicoccum_ardesiacum_CMW26159_EU144075 Pseudofusicoccum_ardesiacum_WAC13294_GU172437 ; END; BEGIN CHARACTERS; TITLE EF_matrix; DIMENSIONS NCHAR=157; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Phaeobotryon_mamane_CPC12443_EU673300 --CCG-GCCGG-----CTGATCTTAGTTT---CTCGAGAGCGCCTC-GGC-------------------------GCCCGCGAGGAT-CAAAAGTCTACTAAA-CGTACTAGAATAGCTC-TGCACAA-TC--CACAT-TCGGTG-TTCAC-----T Phaeobotryon_mamane_CPC12445_EU673302 --CCG-GCCGG-----CTGATCTTAGTTT---CTCGAGAGCGCCTC-GGC-------------------------GCCCGCGAGGAT-CAAAAGTCTACTAAA-CGTACTAGAATAGCTC-TGCACAA-TC--CACAT-TCGGTG-TTCAC-----T Lasiodiplodia_mahajangana_CBS124927_FJ900643 --TCA-GTCGG-----CTGCTCTTAGTTT---CTT-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_mahajangana_CBS124925_FJ900641 --TCA-GTCGG-----CTGCTCTTAGTTT---CTT-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_iraniensis_IRAN1520C_GU945336 --TCG-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATCCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TTGGTG-TCCACCT---T Lasiodiplodia_iraniensis_IRAN1502C_GU945335 --TCG-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATCCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TTGGTG-TCCACCT---T Lasiodiplodia_iraniensis_WAC13297_HM218823 --TCG-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATCCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TTGGTG-TCCACCT---T Lasiodiplodia_iraniensis_WAC13290_HM218824 --TCG-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATCCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TTGGTG-TCCACCT---T Lasiodiplodia_sp.1_WAC13300_GU172409 --TCA-GCCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_sp.1_WAC13280_GU172408 --TCA-GCCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_pseudotheobromae_CBS304.79_EF622061 --TCG-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATCCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TTGGTG-TCCACCT---T Lasiodiplodia_pseudotheobromae_CBS447.62_EF622060 --TCG-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATCCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TTGGTG-TCCACCT---T Lasiodiplodia_pseudotheobromae_WAC13281_GU172412 --TCG-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATCCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_sp.2_MUCC741_GU199411 --TCG-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATCCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TTGGTG-TCCACCT---T Lasiodiplodia_parva_CBS495.78_EF622065 --TCA-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_parva_CBS494.78_EF622064 --TCA-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_hormozganiensis_MUCC738_GU199408 --TCA-GCCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_hormozganensis_CBS124708_GU945344 --TCA-GCCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_hormozganensis_CBS124709_GU945343 --TCA-GCCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_citricola_CBS124706_GU945339 --TCG-GTCGG-----CTGCTCTTAGTTT---CTT-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_citricola_CBS124707_GU945340 --TCG-GTCGG-----CTGCTCTTAGTTT---CTT-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_plurivora_CBS120832_EF445395 --CCG-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_plurivora_CBS121103_EF445396 --CCG-GTCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_gilanensis_CBS12475_GU945341 --CCG-GTCGG-----CCGCTCTTAGTTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_gilanensis_CBS124704_GU945342 --CCG-GTCGG-----CCGCTCTTAGTTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACTAAA-CGTACTGGAAAAACTCATGCACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_crassispora_CBS118741_DQ103557 --CCA-GTCGG-----CTGCTCTTAACCCGCCCTC-------------GG---------------------------------GAATTCA-AAGCAGACTAAA-CGCGCTAGAATATCTCATGCACGGT--TTCGCAT-TCGGTG-TCCACCT---T Lasiodiplodia_crassispora_CMW14688_DQ103558 --CCA-GTCGG-----CTGCTCTTAACCCGCCCTC-------------GG---------------------------------GGATTCA-AAGCAGACTAAA-CGCGCTAGAATATCTCATGCACGGT--TTCGCAT-TCGGTG-TCCACCT---T Lasiodiplodia_venezueliensis_CMW13511_DQ103568 --CCG-GTCGG-----CTGCTCTTAGTTT---CCC-------------GG---------------------------------AGATTCA-AAGCAGACAAAAACGTACTGGAATAACTCATGCACGGT--TTCGCAT-TCGGTG-TCCACCT---T Lasiodiplodia_venezueliensis_CMW13512_DQ103569 --CCG-GTCGG-----CTGCTCTTAGTTT---CCC-------------GG---------------------------------AGATTCA-AAGCAGACAAAAACGTACTGGAATAACTCATGCACGGT--TTCGCAT-TCGGTG-TCCACCT---T Lasiodiplodia_vgonubiensis_CBS115812_DQ103566 --TCA-GTCGG-----CTGCTCTTAATTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACAATA-CGTACTGGAATATCTCCTGGACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_gonubiensis_CBS116355_DQ103567 --TCA-GTCGG-----CTGCTCTTAATTT---CTC-------------GG---------------------------------AAATTCA-AAGCAGACAATA-CGTACTGGAATATCTCCTGGACAGT--TTCACAT-TCGGTG-TCCACCT---T Lasiodiplodia_rubropurpurea_WAC12538_DQ103574 --CCA-GCCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AGATTCA-AAGCAGACAAA--TGTACTGGAACATCTCATGCACAGT--TTCGCAA-TCGGTG-TCCACCT---T Lasiodiplodia_rubropurpurea_CBS118740_DQ103571 --CCA-GCCGG-----CTGCTCTTAGTTT---CTC-------------GG---------------------------------AGATTCA-AAGCAGACAAA--CGTACTGGAACATCTCATGCACAGT--TTCGCAA-TCGGTG-TCCACCT---T Neoscytalidium_novaehollandiae_WAC13289_GU127427 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_novaehollandiae_WAC12691_EF585574 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_novaehollandiae_WAC13273_GU172429 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_novaehollandiae_WAC13296_GU172424 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_novaehollandiae_WAC13288_GU172426 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_novaehollandiae_WAC13303_GU172430 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_novaehollandiae_WAC13304_GU172431 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_novaehollandiae_WAC13275_GU172432 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_novaehollandiae_WAC13291_GU172428 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_novaehollandiae_WAC13286_GU172425 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_novaehollandiae_WAC12688_EF585575 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_novaehollandiae_CMW26168_EF585578 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_novaehollandiae_CMW26169_EF585579 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCGG-TCTT---G-ACCGCAG-CCCCTCT---- Neoscytalidium_dimidiatum_WAC12690_EF585577 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_dimidiatum_WAC12693_EF585576 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_dimidiatum_WAC13277_GU172420 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_dimidiatum_WAC13274_GU172423 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_dimidiatum_WAC13276_GU172421 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_dimidiatum_WAC13301_GU172416 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_dimidiatum_WAC13287_GU172417 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_dimidiatum_WAC13305_GU172422 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_dimidiatum_WAC13284_GU172414 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_dimidiatum_WAC13285_GU172415 GATCG-GCCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_dimidiatum_CBS204.33_EU144064 GATCGG-CCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCA-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neoscytalidium_dimidiatum_CBS499.66_EU144063 GATCGG-CCGG-----CCGTCCTTTCCTT--G-CCGCGGTCC--TCCGGGCC-GC-CCTCCGTCCGGGGGG--TGGCCAGCGCAGAATCG-GGGTTGCCAAAA-C-CACCAGAATGACCT-CGCGCAG-TCTT---G-ATCGCAG-CCCATCT---- Neofusicoccum_luteum_CMW9076_AY236893 GATCA-GCCGG-----CTGCTCCATCTTT--G-CCGCGGTCC--TCCG-ACCGAC-CCCC-GTTCGGGGGG-CCGGCCAGCGCAGAA-CAAAAGTCGCAGAAA-CGTACTAGTATATCT--TGTACGG-TCTT---A-ATCGCAG-TCCA-TT---T Neofusicoccum_australe_CMW9072_AY339268 GATCA-GCCGG-----CTGCTCCATCTTT--G-CCGCGGTCC--TCCG-ACCGAC-CCCC-GTTCGGGGG--CCGGCCAGCGCAGAA-CAAAAGTCGCAGAAA-CGTACTAGTATATCT--CGCACGG-TCTT---A-ATCGCAG-TCCA-TT---T Neofusococcum_ribis_CMW7054_AY236789 GATCA-GCCGG-----CTGCTCAATCTTT--G-CCGCGGTCC--TCCG-ACCGGCGCCCT---TCGGGGGGGCTGGCCAGCGCAGAAT-AAAGTTCGCAAAAA-CGTACTAGTATATCT--CACATAG-TCTT---A-ATCGCAG-TCCA-TTA--T Neofusicoccum_parvum_CMW9081_AY236888 GATCA-GCCGG-----CTGCTCTATCTTT--G-CCGCGGTCC--TCCG-ACCGGCGCCCT---TCGGGGGG-CTGGCCAGCGCAGAAT-AAAGTTCGCAAAAA-CGTACTAGTATACCT--CACATAG-TCTT---A-ATCGCAG-TCCA-TTA--T Neofusicoccum_mangiferum_CMW7024_AY236879 GATCA-GCCGG-----CTGCTCTATCTTT--G-CCGCGGTCC--TCCG-ACCGGCTCCCC---TCGAGGGGGCTGGCCAGCGCAGAAC-AAAGGTTGCAAAAA-CGTACTAGTATATCT--CGCACAG-TCTT---A-ATCGCAG-TCCA-T-ATTT Pseudofusicoccum_stromaticum_CMW13434_AY693975 --T-GGTCCTCATCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCTTGACCGGGG--CTGGCCTGCGCAGAA-CAAAGTTTGCTTTTA--TCATTAAACTGGGT--C-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_stromaticum_CMW13435_DQ436936 --T-GGTCCTCATCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCTTGACCGGGG--CTGGCCTGCGCAGAA-CAAAGTTTGCTTTTA--TCATTAAACTGGGT--C-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_adansoniae_CMW26146_EF585570 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTGATCGGGG--CTGGCCCGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTGAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_adansoniae_CMW26147_EF585571 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTGATCGGGG--CTGGCCCGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTGAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_adansoniae_WAC13299_GU172436 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTGATCGGGG--CTGGCCCGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTGAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_adansoniae_WAC12689_EF585567 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTGATCGGGG--CTGGCCCGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTGAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_adansoniae_WAC13292_GU172433 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTGATCGGGG--CTGGCCCGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTGAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_adansoniae_WAC13278_GU172434 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTGATCGGGG--CTGGCCCGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTGAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_adansoniae_WAC13295_GU172435 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTGATCGGGG--CTGGCCCGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTGAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_adansoniae_MUCC525_EU585573 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTGATCGGGG--CTGGCCCGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTGAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_kimberleyense_CMW26158_EU144073 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTAGCCGGGG--CTGGCCTGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTAAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_kimberleyense_WAC13293_GU172438 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTAGCCGGGG--CTGGCCTGCGCAGGA-CAAAGTTTGCTTATA--TCATTAAACTAAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_kimberleyense_CMW26156_EU144072 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTAGCCGGGG--CTGGCCTGCGCAGGA-CAAAGTTTGCTTATA--TCATTAAACTAAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_kimberleyense_WAC13298_GU172439 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTAGCCGGGG--CTGGCCTGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTAAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_kimberleyense_MUCC742_GU199412 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTAGCCGGGG--CTGGCCTGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTAAGT--T-CACAG-TCTT---A-ATGACGAACCTA-TTCATT Pseudofusicoccum_ardesiacum_CMW26155_EU144076 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTAGCCGGGG--CTGGCCTGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTAAGT--T-CACAG-TCTT---A-ATGACGAACCCA-TTCATT Pseudofusicoccum_ardesiacum_CMW26159_EU144075 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTAGCCGGGG--CTGGCCTGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTAAGT--T-CACAG-TCTT---A-ATGACGAACCCA-TTCATT Pseudofusicoccum_ardesiacum_WAC13294_GU172437 --T-GGTCTTCACCGAGCCCTATTTCTTT--G-CCGCGGTTC--TCCGGGCCGG--CCCCCTAGCCGGGG--CTGGCCTGCGCAGAA-CAAAGTTTGCTTATA--TCATTAAACTAAGT--T-CACAG-TCTT---A-ATGACGAACCCA-TTCATT ; END; BEGIN TREES; Title EF; LINK Taxa = Taxa; TRANSLATE 1 Phaeobotryon_mamane_CPC12443_EU673300, 2 Phaeobotryon_mamane_CPC12445_EU673302, 3 Lasiodiplodia_mahajangana_CBS124927_FJ900643, 4 Lasiodiplodia_mahajangana_CBS124925_FJ900641, 5 Lasiodiplodia_iraniensis_IRAN1520C_GU945336, 6 Lasiodiplodia_iraniensis_IRAN1502C_GU945335, 7 Lasiodiplodia_iraniensis_WAC13297_HM218823, 8 Lasiodiplodia_iraniensis_WAC13290_HM218824, 9 Lasiodiplodia_sp.1_WAC13300_GU172409, 10 Lasiodiplodia_sp.1_WAC13280_GU172408, 11 Lasiodiplodia_pseudotheobromae_CBS304.79_EF622061, 12 Lasiodiplodia_pseudotheobromae_CBS447.62_EF622060, 13 Lasiodiplodia_pseudotheobromae_WAC13281_GU172412, 14 Lasiodiplodia_sp.2_MUCC741_GU199411, 15 Lasiodiplodia_parva_CBS495.78_EF622065, 16 Lasiodiplodia_parva_CBS494.78_EF622064, 17 Lasiodiplodia_hormozganiensis_MUCC738_GU199408, 18 Lasiodiplodia_hormozganensis_CBS124708_GU945344, 19 Lasiodiplodia_hormozganensis_CBS124709_GU945343, 20 Lasiodiplodia_citricola_CBS124706_GU945339, 21 Lasiodiplodia_citricola_CBS124707_GU945340, 22 Lasiodiplodia_plurivora_CBS120832_EF445395, 23 Lasiodiplodia_plurivora_CBS121103_EF445396, 24 Lasiodiplodia_gilanensis_CBS12475_GU945341, 25 Lasiodiplodia_gilanensis_CBS124704_GU945342, 26 Lasiodiplodia_crassispora_CBS118741_DQ103557, 27 Lasiodiplodia_crassispora_CMW14688_DQ103558, 28 Lasiodiplodia_venezueliensis_CMW13511_DQ103568, 29 Lasiodiplodia_venezueliensis_CMW13512_DQ103569, 30 Lasiodiplodia_vgonubiensis_CBS115812_DQ103566, 31 Lasiodiplodia_gonubiensis_CBS116355_DQ103567, 32 Lasiodiplodia_rubropurpurea_WAC12538_DQ103574, 33 Lasiodiplodia_rubropurpurea_CBS118740_DQ103571, 34 Neoscytalidium_novaehollandiae_WAC13289_GU127427, 35 Neoscytalidium_novaehollandiae_WAC12691_EF585574, 36 Neoscytalidium_novaehollandiae_WAC13273_GU172429, 37 Neoscytalidium_novaehollandiae_WAC13296_GU172424, 38 Neoscytalidium_novaehollandiae_WAC13288_GU172426, 39 Neoscytalidium_novaehollandiae_WAC13303_GU172430, 40 Neoscytalidium_novaehollandiae_WAC13304_GU172431, 41 Neoscytalidium_novaehollandiae_WAC13275_GU172432, 42 Neoscytalidium_novaehollandiae_WAC13291_GU172428, 43 Neoscytalidium_novaehollandiae_WAC13286_GU172425, 44 Neoscytalidium_novaehollandiae_WAC12688_EF585575, 45 Neoscytalidium_novaehollandiae_CMW26168_EF585578, 46 Neoscytalidium_novaehollandiae_CMW26169_EF585579, 47 Neoscytalidium_dimidiatum_WAC12690_EF585577, 48 Neoscytalidium_dimidiatum_WAC12693_EF585576, 49 Neoscytalidium_dimidiatum_WAC13277_GU172420, 50 Neoscytalidium_dimidiatum_WAC13274_GU172423, 51 Neoscytalidium_dimidiatum_WAC13276_GU172421, 52 Neoscytalidium_dimidiatum_WAC13301_GU172416, 53 Neoscytalidium_dimidiatum_WAC13287_GU172417, 54 Neoscytalidium_dimidiatum_WAC13305_GU172422, 55 Neoscytalidium_dimidiatum_WAC13284_GU172414, 56 Neoscytalidium_dimidiatum_WAC13285_GU172415, 57 Neoscytalidium_dimidiatum_CBS204.33_EU144064, 58 Neoscytalidium_dimidiatum_CBS499.66_EU144063, 59 Neofusicoccum_luteum_CMW9076_AY236893, 60 Neofusicoccum_australe_CMW9072_AY339268, 61 Neofusococcum_ribis_CMW7054_AY236789, 62 Neofusicoccum_parvum_CMW9081_AY236888, 63 Neofusicoccum_mangiferum_CMW7024_AY236879, 64 Pseudofusicoccum_stromaticum_CMW13434_AY693975, 65 Pseudofusicoccum_stromaticum_CMW13435_DQ436936, 66 Pseudofusicoccum_adansoniae_CMW26146_EF585570, 67 Pseudofusicoccum_adansoniae_CMW26147_EF585571, 68 Pseudofusicoccum_adansoniae_WAC13299_GU172436, 69 Pseudofusicoccum_adansoniae_WAC12689_EF585567, 70 Pseudofusicoccum_adansoniae_WAC13292_GU172433, 71 Pseudofusicoccum_adansoniae_WAC13278_GU172434, 72 Pseudofusicoccum_adansoniae_WAC13295_GU172435, 73 Pseudofusicoccum_adansoniae_MUCC525_EU585573, 74 Pseudofusicoccum_kimberleyense_CMW26158_EU144073, 75 Pseudofusicoccum_kimberleyense_WAC13293_GU172438, 76 Pseudofusicoccum_kimberleyense_CMW26156_EU144072, 77 Pseudofusicoccum_kimberleyense_WAC13298_GU172439, 78 Pseudofusicoccum_kimberleyense_MUCC742_GU199412, 79 Pseudofusicoccum_ardesiacum_CMW26155_EU144076, 80 Pseudofusicoccum_ardesiacum_CMW26159_EU144075, 81 Pseudofusicoccum_ardesiacum_WAC13294_GU172437; TREE EF_parsimony = ((1,2),((((((3,4),(((5,6),(7,8)),(9,10))),((22,23),(24,25))),((11,(12,13)),(14,(((15,16),(20,21)),(17,(18,19)))))),((26,27),((28,29),((30,31),(32,33))))),((((34,35,36,37,38,39,40,41,42,43,44,45,46),((47,49,50,53,55,56,58),48,51,52,54,57)),((59,60),((61,62),63))),((64,65),((((66,68,(70,73),71,72),67),69),((74,(75,76),(77,78)),(79,80),81)))))); TREE EF_bootstrap = ((1,2),((((((3,4),(((5,6),(7,8)),(9,10))),((22,23),(24,25))),((11,(12,13)),14,((15,16),(20,21)),(17,(18,19)))),((26,27),((28,29),((30,31),(32,33))))),((((34,35,36,37,38,39,40,41,42,43,44,45,46),(47,49,50,53,55,56,58),48,51,52,54,57),((59,60),((61,62),63))),((64,65),(((66,67,68,(70,73),71,72),69),((74,75,76,77,78),79,80,81)))))); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 157; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 157; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 157; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1300716780749; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7551132227912475172; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2944651527393185765; mqVersion 273; checksumv 0 2 4234134100 null getNumChars 157 numChars 157 getNumTaxa 81 numTaxa 81 short true bits 15 states 15 sumSquaresStatesOnly 192592.0 sumSquares 192592.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 273; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;