#NEXUS BEGIN DATA; dimensions ntax=42 nchar=430; format DATATYPE=mixed (DNA:1-398, standard:399-430) missing=? interleave=no gap=-; MATRIX [0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000] [0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222233333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333334444444444444444444444444444444] [0000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223] [1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890] Diaporthe_caulivora_Dip1 ????????????????????AAGGTTAGTGAATATC--CAAACATCCAGCAAATGCTTCCACTCCCAT-CCCA-GTGCTACTCGCAGCTGTCTGCG-TGCGGCCATTTGCGCCGCATCATCACAC----CTGGAGGC--GCATTTTCACCC-CTCGCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATCTGGGGGGCTTATCTTCCGCCTGCAAAACCCTGTTAC--ATCACCCCTCCCAACCACCATTTCCGC-CACCACTCTTACCACACCTGCCGTCGCCCGCCCACATCAAAGCAAGATGAAAGCCCCAT-TTTTAAAGCATGATGCTGACCTCTTCTCTATATAGCCGCTGAGCTC????????????????????1011010011101-011000000100010010 Diaporthe_caulivora_Dpc11 ????????????????????AAGGTTAGTGAATATC--CAAACATCCAGCAAATGCTTCCACTCCCAT-CCCA-GTGCTACTCGCAGCTGTCTGCG-TGCGGCCATTTGCGCCGCATCATCACAC----CTGGAGGC--GCATTTTCACCC-CTCGCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATCTGGGGGGCTTATCTTCCGCCTGCAAAACCCTGTTAC--ATCACCCCTCCCAACCACCATTTCCGC-CACCACTCTTACCACACCTGCCGTCGCCCGCCCACATCAAAGCAAGATGAAAGCCCCAT-TTTTAAAGCATGATGCTGACCTCTTCTCTATATAGCCGCTGAGCTC????????????????????1011010011101-011000000100010010 Diaporthe_caulivora_Dip2 ????????????????????AAGGTTAGTGAATATC--CAAACATCCAGCAAATGCTTCCACTCCCAT-CCCA-GTGCTACTCGCAGCTGTCTGCG-TGCGGCCATTTGCGCCGCATCATCACAC----CTGGAGGC--GCATTTTCACCC-CTCGCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATCTGGGGGGCTTATCTTCCGCCTGCAAAACCCTGTTAC--ATCACCCCTCCCAACCACCATTTCCGC-CACCACTCTTACCACACCTGCCGTCGCCCGCCCACATCAAAGCAAGATGAAAGCCCCAT-TTTTAAAGCATGATGCTGACCTCTTCTCTATATAGCCGCTGAGCTC????????????????????1011010011101-011000000100010010 Diaporthe_caulivora_Dpc4 ????????????????????AAGGTTAGTGAATATC--CAAACATCCAGCAAATGCTTCCACTCCCAT-CCCA-GTGCTACTCGCAGCTGTCTGCG-TGCGGCCATTTGCGCCGCATCATCACAC----CTGGAGGC--GCATTTTCACCC-CTCGCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATCTGGGGGGCTTATCTTCCGCCTGCAAAACCCTGTTAC--ATCACCCCTCCCAACCACCATTTCCGC-CACCACTCTTACCACACCTGCCGTCGCCCGCCCACATCAAAGCAAGATGAAAGCCCCAT-TTTTAAAGCATGATGCTGACCTCTTCTCTATATAGCCGCTGAGCTC????????????????????1011010011101-011000000100010010 Diaporthe_caulivora_Dpc1 ????????????????????AAGGTTAGTGAATATC--CAAACATCCAGCAAATGCTTCCACTCCCAT-CCCA-GTGCTACTCGCAGCTGTCTGCG-TGCGGCCATTTGCGCCGCATCATCACAC----CTGGAGGC--GCATTTTCACCC-CTCGCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATCTGGGGGGCTTATCTTCCGCCTGCAAAACCCTGTTAC--ATCACCCCTCCCAACCACCATTTCCGC-CACCACTCTTACCACACCTGCCGTCGCCCGCCCACATCAAAGCAAGATGAAAGCCCCAT-TTTTAAAGCATGATGCTGACCTCTTCTCTATATAGCCGCTGAGCTC????????????????????1011010011101-011000000100010010 Diaporthe_phaseolorum_var_caulivora_AF398889 CATCGAGAAGTTCGAGAAGGAAGGTTAGTGAATATC--CAAACATCCAGCAAATGCTTCCACTCCCAT-CCCA-GTGCTACTCGCAGCTGTCTGCG-TGCGGCCATTTGCGCCGCATCATCACAC----CTGGAGGC--GCATTTTCACCC-CTCGCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATCTGGGGGGCTTATCTTCCGCCTGCAAAACCCTGTTAC--ATCACCCCTCCCAACCACCATTTCCGC-CACCACTCTTACCACACCTGCCGTCGCCCGCCCACATCAAAGCAAGATGAAAGCCCCAT-TTTTAAAGCATGATGCTGACCTCTTCTCTATATAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA1011010011101-011000000100010010 Phomopsis_longicolla_1_2_4_1 ????????????????????AAGGTCAGTAAATACCACCACACGTGCAGCTTGCGCTCCAT--ATCCC-TCCATGTGCACATAGAAACCGTTGGCG-TGCG-CTGTCTGCGACGCTCCGTCACACCTACCTGTAAAG--GCATTTTCACCC-CTCCCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC---ACACATCAACCCTGTCGC--ACCTTTACCACTGTTCGCCAGTGACA--CACCAATAGCATCACTTTCATTCCCACTTTCTGCTCCAGAGAGCTTTTTGGA------T-CGTTCCAAAATCATGCTGACT--CTTTCTACACAGCCGCCGAGCTG????????????????????0110011001101-011101-001001-0111 Phomopsis_longicolla_1_2_4_2 ????????????????????AAGGTCAGTAAATACCACCACACGTGCAGCTTGCGCTCCAT--ATCCC-TCCATGTGCACATAGAAACCGTTGGCG-TGCG-CTGTCTGCGACGCTCCGTCACACCTACCTGTAAAG--GCATTTTCACCC-CTCCCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC---ACACATCAACCCTGTCGC--ACCTTTACCACTGTTCGCCAGTGACA--CACCAATAGCATCACTTTCATTCCCACTTTCTGCTCCAGAGAGCTTTTTGGA------T-CGTTCCAAAATCATGCTGACT--CTTTCTACACAGCCGCCGAGCTG????????????????????0110011001101-011101-001001-0111 Phomopsis_longicolla_1_2_4_3 ????????????????????AAGGTCAGTAAATACCACCACACGTGCAGCTTGCGCTCCAT--ATCCC-TCCATGTGCACATAGAAACCGTTGGCG-TGCG-CTGTCTGCGACGCTCCGTCACACCTACCTGTAAAG--GCATTTTCACCC-CTCCCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC---ACACATCAACCCTGTCGC--ACCTTTACCACTGTTCGCCAGTGACA--CACCAATAGCATCACTTTCATTCCCACTTTCTGCTCCAGAGAGCTTTTTGGA------T-CGTTCCAAAATCATGCTGACT--CTTTCTACACAGCCGCCGAGCTG????????????????????0110011001101-011101-001001-0111 Phomopsis_longicolla_PL7 ????????????????????AAGGTCAGTAAATACCACCACACGTGCAGCTTGCGCTCCAT--ATCCC-TCCATGTGCACATAGAAACCGTTGGCG-TGCG-CTGTCTGCGACGCTCCGTCACACCTACCTGTAAAG--GCATTTTCACCC-CTCCCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC---ACACATCAACCCTGTCGC--ACCTTTACCACTGTTCGCCAGTGACA--CACCAATAGCATCACTTTCATTCCCACTTTCTGCTCCAGAGAGCTTTTTGGA------T-CGTTCCAAAATCATGCTGACT--CTTTCTACACAGCCGCCGAGCTG????????????????????0110011001101-011101-001001-0111 Phomopsis_longicolla_3_27_3_2 ????????????????????AAGGTCAGTAAATACCACCACACGTGCAGCTTGCGCTCCAT--ATCCC-TCCATGTGCACATAGAAACCGTTGGCG-TGCG-CTGTCTGCGACGCTCCGTCACACCTACCTGTAAAG--GCATTTTCACCC-CTCCCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC---ACACATCAACCCTGTCGC--ACCTTTACCACTGTTCGCCAGTGACA--CACCAATAGCATCACTTTCATTCCCACTTTCTGCTCCAGAGAGCTTTTTGGA------T-CGTTCCAAAATCATGCTGACT--CTTTCTACACAGCCGCCGAGCTG????????????????????0110011001101-011101-001001-0111 Phomopsis_longicolla_PL4 ????????????????????AAGGTCAGTAAATACCACCACACGTGCAGCTTGCGCTCCAT--ATCCC-TCCATGTGCACATAGAAACCGTTGGCG-TGCG-CTGTCTGCGACGCTCCGTCACACCTACCTGTAAAG--GCATTTTCACCC-CTCCCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC---ACACATCAACCCTGTCGC--ACCTTTACCACTGTTCGCCAGTGACA--CACCAATAGCATCACTTTCATTCCCACTTTCTGCTCCAGAGAGCTTTTTGGA------T-CGTTCCAAAATCATGCTGACT--CTTTCTACACAGCCGCCGAGCTG????????????????????0110011001101-011101-001001-0111 Phomopsis_longicolla_Pl1a ????????????????????AAGGTCAGTAAATACCACCACACGTGCAGCTTGCGCTCCAT--ATCCC-TCCATGTGCACATAGAAACCGTTGGCG-TGCG-CTGTCTGCGACGCTCCGTCACACCTACCTGTAAAG--GCATTTTCACCC-CTCCCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC---ACACATCAACCCTGTCGC--ACCTTTACCACTGTTCGCCAGTGACA--CACCAATAGCATCACTTTCATTCCCACTTTCTGCTCCAGAGAGCTTTTTGGA------T-CGTTCCAAAATCATGCTGACT--CTTTCTACACAGCCGCCGAGCTG????????????????????0110011001101-011101-001001-0111 Phomopsis_longicolla_AF398900 CATCGAGAAGTTCGAGAAGGAAGGTCAGTAAATACCACCACACGTGCAGCTTGCGCTCCAT--ATCCC-TCCATGTGCACATAGAAACCGTTGGCG-TGCG-CTGTCTGCGACGCTCCGTCACACCTACCTGTAAAG--GCATTTTCACCC-CTCCCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC---ACACATCAACCCTGTCGC--ACCTTTACCACTGTTCGCCAGTGACA--CACCAATAGCATCACTTTCATTCCCACTTTCTGCTCCAGAGAGCTTTTTGGA------T-CGTTCCAAAATCATGCTGACT--CTTTCTACACAGCCGCCGAGCTGGGTAAGGGTTCCTTCAAGTA0110011001101-011101-001001-0111 Diaporthe_phaseolorum_AF398894 CATCGAGAAGTTCGAGAAGGAAGGTTAGTAAATACCACCACACCTGCAGCTTGCGCTCCAT--ATCCC-TCTATATGCACATAGAAACCGTTGGCG-TGCG-CTGTCTGCGACGCTCCGTCAC------CTGTAAAG--GCATTTTCACCC-CTCCCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC---ACACATCAACCCTGTCGC--ACCTTTACCACTGTTCGCCAGTGACA--CACCAATAGCATCACTTTCATTCCCACTTTCTGCTCCAGGGAGCTTTTTGGA------T-CGTTCCAAAATCATGCTGACT--CTTTCTACACAGCCGCCGAGCTGGGTAAGGGTTCCTTCAAGTA01100111-1101-011101-001001-0111 Diaporthe_phaseolorum_FAU458 CATCGAGAAGTTCGAGAAGGAAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTCCCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGTGGGAGCTTTTCGAC------T-TGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTGGGTAAGGGTTCCTTCAA???0110111011101-0111001001001-0111 Diaporthe_phaseolorum_AF398895 CATCGAGAAGTTCGAGAAGGAAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTCCCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGTGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTGGGTAAGGGTTCCTTCAAGTA0110111011101-0111001001001-0111 Diaporthe_phaseolorum_PSu5 ????????????????????AAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTACCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGAGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTG????????????????????0110111011101-0111001001001-0111 Diaporthe_phaseolorum_Ar2 ????????????????????AAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTACCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGAGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTG????????????????????0110111011101-0111001001001-0111 Diaporthe_phaseolorum_PSuS4 ????????????????????AAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTACCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGAGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTG????????????????????0110111011101-0111001001001-0111 Diaporthe_phaseolorum_PSuS3 ????????????????????AAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTACCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGAGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTG????????????????????0110111011101-0111001001001-0111 Diaporthe_phaseolorum_PSuB9 ????????????????????AAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTACCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGAGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTG????????????????????0110111011101-0111001001001-0111 Diaporthe_phaseolorum_Su10 ????????????????????AAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTACCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGAGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTG????????????????????0110111011101-0111001001001-0111 Diaporthe_phaseolorum_Su9 ????????????????????AAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTACCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGAGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTG????????????????????0110111011101-0111001001001-0111 Diaporthe_phaseolorum_PSu1 ????????????????????AAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTACCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGAGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTG????????????????????0110111011101-0111001001001-0111 Diaporthe_phaseolorum_PS8 ????????????????????AAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTACCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGAGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTG????????????????????0110111011101-0111001001001-0111 Diaporthe_phaseolorum_PS03 ????????????????????AAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTACCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGAGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTG????????????????????0110111011101-0111001001001-0111 Diaporthe_phaseolorum_PS06 ????????????????????AAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCAC--ATCAC-CCCATACGCACA--GAACTCGTTGGCG-CGCG-CTGCCTGCGAGGCTTCGTCACAC----CTGTCAAG--GCATTTTCACCC-CTACCTCTGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTC-TCACACCAAAACCCTGTCGC--ACCTTACCTCTCTTCCACCAGTGACG--CACCAACAGTATCACCTTCATTCCCATCTGTTGCTCGAGGGAGCTTTTCGAC------T-CGCTTGAAAATGATGCTGACT--CTTTCTGAACAGCCGCCGAGCTG????????????????????0110111011101-0111001001001-0111 Diaporthe_melonis_GQ250314 ????????????????????AAGGTTAGTAAACATCACCAAACCCGCAGTTTGACCTCCAT--GTCCC-TCCATACGCACATAGAAATCGTTGGCG-CGCG-CTGCCTGCGGGGCTTCGTCACAC----CTGTCCAG--GCATTTTCACCC-CTCCCTCCGGATTTT----CCATTTTCAGTG-CGGGTGCGGGGT-GTGCTTATC-AGACCGCTTATCTCCTCGCACCAAAACCCTGCCGC--ACCT-AGCACACTTC-ACCTGTGACG--CACCAATAGCATCGTTTTTATTCCCAATTGTTGCGCGAAGGAGCTACTCGAA------T-CGCTTGAAAGTCATGCTGACT--CTTTCTGTACAGCCGCCGAGCTG????????????????????0110011011101-0111000001111-0111 Diaporthe_noveum_AS1 ????????????????????AAGGTCAGTAAATATCGCACATCCCACAGCATGAACTCCACCAAGCCC-ACCGTGCGCACATCGTCATCATTGGTG-CGCGACTGCCTGCGCGGCTTCATCAC------CCCTCAAA--CCATTTTCACCC-CTCCCTCTGGGTTTTTTTTCCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AG-CCGCTTATCTCCTAT--GCAAAACCCTGCTG---GCATTAACCACTCCTTGCCACCGCCAA-CACCAACTCTACCACTTTCAACCCTATC---AATCTCCCAGGCGAAACGAAC------T-GTCAAGAATATGAAGCTGACTTACTTTCCACACAGCCGCCGAGCTG????????????????????00100101-11000011110011-00011110 Diaporthe_noveum_4_27_3_2 ????????????????????AAGGTCAGTAAATATCGCACATCCCACAGCATGAACTCCACCAAGCCC-ACCGTGCGCACATCGTCATCATTGGTG-CGCGACTGCCTGCGCGGCTTCATCAC------CCCTCAAA--CCATTTTCACCC-CTCCCTCTGGGTTTTTTTTCCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AG-CCGCTTATCTCCTAT--GCAAAACCCTGCTG---GCATTAACCACTCCTTGCCACCGCCAA-CACCAACTCTACCACTTTCAACCCTATC---AATCTCCCAGGCGAAACGAAC------T-GTCAAGAATATGAAGCTGACTTACTTTCCACACAGCCGCCGAGCTG????????????????????00100101-11000011110011-00011110 Diaporthe_noveum_4_27_3_1 ????????????????????AAGGTCAGTAAATATCGCACATCCCACAGCATGAACTCCACCAAGCCC-ACCGTGCGCACATCGTCATCATTGGTG-CGCGACTGCCTGCGCGGCTTCATCAC------CCCTCAAA--CCATTTTCACCC-CTCCCTCTGGGTTTTTTTTCCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AG-CCGCTTATCTCCTAT--GCAAAACCCTGCTG---GCATTAACCACTCCTTGCCACCGCCAA-CACCAACTCTACCACTTTCAACCCTATC---AATCTCCCAGGCGAAACGAAC------T-GTCAAGAATATGAAGCTGACTTACTTTCCACACAGCCGCCGAGCTG????????????????????00100101-11000011110011-00011110 Diaporthe_noveum_5_27_3_1 ????????????????????AAGGTCAGTAAATATCGCACATCCCACAGCATGAACTCCACCAAGCCC-ACCGTGCGCACATCGTCATCATTGGTG-CGCGACTGCCTGCGCGGCTTCATCAC------CCCTCAAA--CCATTTTCACCC-CTCCCTCTGGGTTTTTTTTCCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AG-CCGCTTATCTCCTAT--GCAAAACCCTGCTG---GCATTAACCACTCCTTGCCACCGCCAA-CACCAACTCTACCACTTTCAACCCTATC---AATCTCCCAGGCGAAACGAAC------T-GTCAAGAATATGAAGCTGACTTACTCTCCACACAGCCGCCGAGCTG????????????????????00100101-11000011110011-00011110 Diaporthe_noveum_5_27_3_2 ????????????????????AAGGTCAGTAAATATCGCACATCCCACAGCATGAACTCCACCAAGCCC-ACCGTGCGCACATCGTCATCATTGGTG-CGCGACTGCCTGCGCGGCTTCATCAC------CCCTCAAA--CCATTTTCACCC-CTCCCTCTGGGTTTTTTTTCCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AG-CCGCTTATCTCCTAT--GCAAAACCCTGCTG---GCATTAACCACTCCTTGCCACCGCCAA-CACCAACTCTACCACTTTCAACCCTATC---AATCTCCCAGGCGAAACGAAC------T-GTCAAGAATATGAAGCTGACTTACTCTCCACACAGCCGCCGAGCTG????????????????????00100101-11000011110011-00011110 Diaporthe_noveum_5_27_3_3 ????????????????????AAGGTCAGTAAATATCGCACATCCCACAGCATGAACTCCACCAAGCCC-ACCGTGCGCACATCGTCATCATTGGTG-CGCGACTGCCTGCGCGGCTTCATCAC------CCCTCAAA--CCATTTTCACCC-CTCCCTCTGGGTTTTTTTTCCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AG-CCGCTTATCTCCTAT--GCAAAACCCTGCTG---GCATTAACCACTCCTTGCCACCGCCAA-CACCAACTCTACCACTTTCAACCCTATC---AATCTCCCAGGCGAAACGAAC------T-GTCAAGAATATGAAGCTGACTTACTCTCCACACAGCCGCCGAGCTG????????????????????00100101-11000011110011-00011110 Phomopsis_sp_9_GQ250363 ????????????????????AAGGTCAGTAAATATCGCACATCCCACAGCATGAACTCCACCAAGCCC-ACCGTGCGCACATCGTCATCATTGGTG-CGCGACTGCCTGCGCGGCTTCATCAC------CCCTCAAA--CCATTTTCACCC-CTCCCTCTGGGTTTTTTTTCCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AG-CCGCTTATCTCCTAT--GCAAAACCCTGCTG---GCATTAACCACTCCTTGCCACCGCCAA-CACCAACTCTACCACTTTCAACCCTATC---AATCTCCCAGGCGAAACGAAC------T-GTCAAGAATATGAAGCTGACTTACTCTCCACACAGCCGCCGAGCTG????????????????????00100101-11000011110011-00011110 Phomopsis_sp_9_DQ286259 ???????????????????????GTCAGTAAATATCGCACATCCCACAGCATGAACTCCACCAAGCCC-ACCGTGCGCACATCGTCATCATTGGTG-CGCGACTGCCTGCGCGGCTTCATCAC------CCCTCAAA--CCATTTTCACCC-CTCCCTCTGGGTTTTTTTTCCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AG-CCGCTTATCTCCTAT--GCAAAACCCTGCTG---GCATTAACCACTCCTTGCCACCGCCAA-CACCAACTCTACCACTTTCAACCCTATC---AATCTCCCAGGCGAAACGAAC------T-GTCAAGAATATGAAGCTGACTTACTCTCCACACAGCCGCCGAGCTGGGTAAGGGTTC?????????00100101-11000011110011-00011110 Diaporthe_noveum_3_27_3_1 ????????????????????AAGGTCAGTAGATATCGCACATCCCACAGCATGAACTCCACCAAGCCC-ACCGTGCGCACATCGTCATCATTGGTG-CGCGACTGCCTGCGCGGCTTCATCAC------CCCTCAAC--CCATTTTCACCC-CTCCCTCTGG-TTTTTTTTCCATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AG-CCGCTTATCTACTAT--GCAAAACCCTGCTT---GCATTAACCACTCCTTGCCACCGCCAA-CACCAACTCTACCACTTTCAACCCTATC---AATCTCCCTGGCGAAACGAAC------T-GTCAAGAATATGAAGCTGACTTACTTTCCACACAGCCGCCGAGCTG????????????????????00100101-11100011110011-00011110 Diaporthe_lusitanicae_GQ250311 ????????????????????AAGGTCAGTAAACATCACGCATCCCACAGCATGAACTCCACAAAGTCC-TCCATGCGCACATTGTCATCATTGGTG-CGCGACTGCCTGCGCGGCTTCGTCAC------CCGTCAAG--GCATTTTCACCC-CTCCCTCTGGGTTTTTTTTC-ATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTCCTACACGCAAAACCCTGCTG---GCATTAACCACTCCTTACCACCGCCAA-CACCAACTCTACCACCATGAACCCTATCCAAAGCCCTCCTGGCGAAACGAAC------T-GTCAAGAAAATGACGCTGACTTACTTTTCACCCAGCCGCCGAGCTG????????????????????00100101-11000111100001-00010110 Diaporthe_lusitanicae_GQ250310 ????????????????????AAGGTCAGTAAACATCACGCATCCCACAGCATGAACTCCACAAAGTCC-TCCATGCGCACATTGTCATCATTGGTG-CGCGACTGCCTGCGCGGCTTCGTCAC------CCGTCAAG--GCATTTTCACCC-CTCCCTCTGGGTTTTTTTTC-ATTTTCAGTG-CGGGTGCGGGGT-GCGCTTATC-AGGCCGCTTATCTCCTACACGCAAAACCCTGCTG---GCATTAACCACTCCTTACCACCGCCAA-CACCAACTCTACCACCATGAACCCTATCCAAAGCCCTCCTGGCGAAACGAAC------T-GTCAAGAAAATGACGCTGACTTACTTTTCACCCAGCCGCCGAGCTG????????????????????00100101-11000111100001-00010110 Leucostoma_niveum_DQ862035 ????????????????????AAGATTGGCGGTATTGGAACAGTGCCCGTCGGCCGTATCGAGACTGGTGTCCTCAAGCCCGGTATGGTCGTTACCTTCGCCCCCGCTGGTGTGACCACTGAGGTCAAGTCCGTCGAGATGCACCACGAGCAGCTCAGTGAGGGTCTC---CCCGGTGACAACGTTGGATTCAACGTCAAGAACGTCTCCGTCAAGGAGATT-CGCCGTGGAAACGTTGCTGGTGACTCCAAGAACGACCCCCCTATGGGAGCCGCTTCTTTCACCGCCCAGGTCATCGTCCTCAACCACCCTGGCCAGGTCGGTGCTGGATACGCACCAGTCCTTGACTGCCACACTGCCCACATTGCTTGCAAGTTCGCCGAGATC???????????00000000000001000000100000000000 Valsa_ambiens_DQ862041 ????????????????????AAGATTGGCGGTATTGGCACAGTGCCCGTCGGCCGTATCGAGACTGGTATCCTCAAGCCCGGTATGGTCGTCACCTTCGCTCCCGCCAACGTCACCACTGAGGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCACCGAGGGTCTC---CCCGGTGACAACGTCGGCTTCAACGTCAAGAACGTCTCCGTCAAGGAGATT-CGTCGTGGCAACGTTGCCGGTGACACCAAGAACGACCCCCCTCTGGGTTGTGCTTCCTTCACCGCCCAGGTCATCGTCCTGAACCACCCCGGTCAGGTCGGTGCTGGATACGCACCAGTCCTCGATTGCCACACTGCCCACATTGCTTGCAAGTTCGCCGAGATC???????????00000000000001000000100000000000 ; END; begin trees; translate 1 Diaporthe_caulivora_Dip1, 2 Diaporthe_caulivora_Dpc11, 3 Diaporthe_caulivora_Dip2, 4 Diaporthe_caulivora_Dpc4, 5 Diaporthe_caulivora_Dpc1, 6 Diaporthe_phaseolorum_var_caulivora_AF398889, 7 Phomopsis_longicolla_1_2_4_1, 8 Phomopsis_longicolla_1_2_4_2, 9 Phomopsis_longicolla_1_2_4_3, 10 Phomopsis_longicolla_PL7, 11 Phomopsis_longicolla_3_27_3_2, 12 Phomopsis_longicolla_PL4, 13 Phomopsis_longicolla_Pl1a, 14 Phomopsis_longicolla_AF398900, 15 Diaporthe_phaseolorum_AF398894, 16 Diaporthe_phaseolorum_FAU458, 17 Diaporthe_phaseolorum_AF398895, 18 Diaporthe_phaseolorum_PSu5, 19 Diaporthe_phaseolorum_Ar2, 20 Diaporthe_phaseolorum_PSuS4, 21 Diaporthe_phaseolorum_PSuS3, 22 Diaporthe_phaseolorum_PSuB9, 23 Diaporthe_phaseolorum_Su10, 24 Diaporthe_phaseolorum_Su9, 25 Diaporthe_phaseolorum_PSu1, 26 Diaporthe_phaseolorum_PS8, 27 Diaporthe_phaseolorum_PS03, 28 Diaporthe_phaseolorum_PS06, 29 Diaporthe_melonis_GQ250314, 30 Diaporthe_noveum_AS1, 31 Diaporthe_noveum_4_27_3_2, 32 Diaporthe_noveum_4_27_3_1, 33 Diaporthe_noveum_5_27_3_1, 34 Diaporthe_noveum_5_27_3_2, 35 Diaporthe_noveum_5_27_3_3, 36 Phomopsis_sp_9_GQ250363, 37 Phomopsis_sp_9_DQ286259, 38 Diaporthe_noveum_3_27_3_1, 39 Diaporthe_lusitanicae_GQ250311, 40 Diaporthe_lusitanicae_GQ250310, 41 Leucostoma_niveum_DQ862035, 42 Valsa_ambiens_DQ862041 ; tree Fig1 = [&U] (41:0.021757,42:0.065482,((1:0.002543,2:0.002515,3:0.002566,4:0.002459,5:0.002562,6:0.002417):0.270330,(((15:0.010534,(7:0.002669,8:0.002578,9:0.002582,10:0.002585,11:0.002688,12:0.002592,13:0.002538,14:0.002630):0.013594):0.114790,(29:0.083627,((16:0.005392,17:0.002729):0.006528,(18:0.002678,19:0.002766,20:0.002627,21:0.002659,22:0.002692,23:0.002571,24:0.002683,25:0.002730,26:0.002631,27:0.002648,28:0.002675):0.005773):0.052259):0.031826):0.153590,((30:0.002643,31:0.002603,32:0.002607,38:0.018730,(33:0.002632,34:0.002569,35:0.002607,36:0.002573,37:0.002608):0.005308):0.058625,(39:0.002562,40:0.002664):0.036399):0.143477):0.173151):1.240306); end;