#NEXUS [written Wed Jun 23 14:37:38 EDT 2010 by Mesquite version 2.72 (build 528) at fre1/140.232.239.134] BEGIN TAXA; TITLE Pluteus_section_Hispidoderma; DIMENSIONS NTAX=31; TAXLABELS Pluteus_aff_leoninus_II_TNSF11908_Japan Pluteus_aff_leoninus_I_SF19_Illinois Pluteus_aff_leoninus_I_SF21_Illinois Pluteus_aff_semibulbosu_TNSF12393_Japan Pluteus_castri_Russia_FJ774077 Pluteus_castri_TNSF17081_Japan Pluteus_castri_TNSF17602_Japan Pluteus_conizatus_var_africanus_Thoen5250_Congo Pluteus_dietrichii_JLS1624_Spain Pluteus_granularis_SF20_Illinois Pluteus_granularis_Strack7_Illinois Pluteus_granulatus_AJ203_Spain Pluteus_granulatus_Russia_FJ774086 Pluteus_heteromarginatus_AJ172_Florida Pluteus_leoninus_AJ_212_Spain Pluteus_leoninus_DrewH_Idaho Pluteus_leoninus_Halling6546_NewYork Pluteus_leoninus_Josserand_sn_France Pluteus_leoninus_SF17_Michigan Pluteus_longistriatus_Minnis309203_Missouri Pluteus_longistriatus_SP393700_Brazil Pluteus_longistriatus_SP394004_Brazil Pluteus_longistriatus_SP394386_Brazil Pluteus_pantherinus_TNSF12882_Japan Pluteus_plautus_AJ209_Spain Pluteus_plautus_Russia_FJ774076 Pluteus_semibulbosus_Russia_FJ774080 Pluteus_seticeps_Shaffer798_Illinois Pluteus_sp_I_TNSF12365_Japan Pluteus_sp_I_TNSF12372_Japan Pluteus_umbrosus_AJ213_Spain ; END; BEGIN CHARACTERS; TITLE Pluteus_section_Hispidoderma; DIMENSIONS NCHAR=682; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Pluteus_aff_leoninus_II_TNSF11908_Japan TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAAACCCG?GTG?CGGTTG??TGCTGGCCTCCTT??CCGAGGCATGTGCAC?GCCCACCATTTGTTTCATCCTTC?TTCCCACCTGTGCA?CTTCTGTAGGCC-ACCCAGCCGCCCTGGCATG??????????????????????????????CGGCTGGAAC?TAGTG?GTCTACGTTTT?CTTATC?AACTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCATC??ATGGCCTTATAAAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACCCCACTCC?CT?-TGTGGTGT??GGGGTGCTTGGACTTGGAGATT???GCAGGCCCAC??TAGCTGTG?CCAGCTCCTCTGAAATGCATTAGCAGAG?CCCATC??GTGC-ATCTGTGGCTTGGTG?TGATAGTA?AATCTACACCTAGCGATGTTG?TGCATC??AAATCTGCTGCCAGTCGTCCGCTTTG?CTGGACAA?CACCATTGACCATTTGACCTCAAATCA Pluteus_aff_leoninus_I_SF19_Illinois TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAA?TCCG?GTG?TGGTTG??TGCTGGCCTCCTCTGCCGAGGCATGTGCAC?GCCCACCATTTGTTTCATCCTTC?TTCCCACCTGTGCA?CTTCTGTAGGCC-ACCCAGCCAGCCTGGTATG??????????????????????????????CGGCTGGA??ACAGTG?GTCTATGTTTT?CTCATC?AACTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCATC??ATGGCCTTATAAAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACCCCACTGC?CT?-TGTAGCAT??GGGGTGTTTGGACTTGGAGATT???GCAGGCCCAC??CAGCTGGG?CCAGCTCCTCTGAAATGCATTAGCAGAG?CCCATCATGTGC-ATCTGTGGCTTGGTG?TGATAGT??AATCTACACCTAGCAATGTTG?TGCATC??GAATCTGCTGCCAGTCGTCCGCTTCC?CTGGACA???ATCATTGACCATTTGACCTCAAATCA Pluteus_aff_leoninus_I_SF21_Illinois TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAA?TCCG?GTG?TGGTTG??TGCTGGCCTCCTCTGCCGAGGCATGTGCAC?GCCCACCATTTGTTTCATCCTTC?TTCCCACCTGTGCA?CTTCTGTAGGCC-ACCCAGCCAGCCTGGTATG??????????????????????????????CGGCTGGA??ACAGTG?GTCTATGTTTT?CTCATC?AACTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCATC??ATGGCCTTATAAAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACCCCACTGC?CT?-TGTAGCAT??GGGGTGTTTGGACTTGGAGATT???GCAGGCCCAC??CAGCTGGG?CCAGCTCCTCTGAAATGCATTAGCAGAG?CCCATCATGTGC-ATCTGTGGCTTGGTG?TGATAGT??AATCTACACCTAGCAATGTTG?TGCATC??GAATCTGCTGCCAGTCGTCCGCTTCC?CTGGACA???ATCATTGACCATTTGACCTCAAATCA Pluteus_aff_semibulbosu_TNSF12393_Japan TAGGTGAACCTGCGGAAGGATCA?TTATTGAACAAA?CCG?GTGTTGGCTG??AGCTGGCCTCTT???TGGAGGCATGTGCACGGTCCACCA?TTGTTTCATCCTTCTCTTCCACCTGTGCA?CTTCTGTGGGCCCACTCCAGCACACGTGC???????????????????????????????????GCTGGAAT??CTGGCGCCTACGTTTT?ACTACC?CACACC?ATTGAATGTT?AAGAACGCATGAATAGGGCATT?????TGCCC-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCATCTTT?-TG?--??????AGAGGGTTGGACTTGGAGG?TTCTGCTGGCCCCGTTCTCTGGGA?CCGGCTCCTCTGAAATGCATTAGCAGGGGTTCATCTTG?GCGATCTGCAGCCTAGTG?TGATAGTCATATCTACACTTGGAGAGGTCCCCATT????CACCCAGCTTCCAGCCGTCCGCTTTT?GTGGACAA???CACCTGACCACTTGACCTCAAATCA Pluteus_castri_Russia_FJ774077 ???????????????????????????????????????????????????????CTGGCCCTTT??????GGGCATGTGCAC?ACCCGCCATTTGTTTCATCCTTC?TTTCCACCTGTGCA?CTGCTGTGGGCT-ACCCAGCCAGCCTGGCATG??????????????????????????????CGGCTGGAACA?AGTG?GTCCACGTTTT?CTCATC?AACTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCTTC??ATGGCCTTATAAAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTGAATCATCAACCCCACTTC?TT?-TGTGGAGTCGGGGGTGCTTGGACATGGAGACT???GCAGGCCC????CAAGAGGG?CATGCTTCTCTGAAATGCATTAGCAGTG?CCTGTCATGTGC-ATC??TGGCTTGGTG?TGATAGT??AATCTACGCCTGGCGACGTTG?CACATT??GAATCTGCTCACAATCGTCCAACATC?CTGGACAA????CATTGACAATTTGACCTCAAATCA Pluteus_castri_TNSF17081_Japan TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAAACCCG?GTG?TGGTTG??TGCTGGCCCTTT??????GGGCATGTGCAC?ACCCGCCATTTGTTTCATCCTTC?TTTCCACCTGTGCA?CTGCTGTGGGCT-ACCCAGCCAGCCTGGCATG??????????????????????????????CGGCTGGAACA?AGTG?GTCCACGTTTT?CTCATC?AACTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCTTC??ATGGCCTTATAAAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTGAATCATCAACCCCACTTC?TT?-TGTGGAGTCGGGGGTGCTTGGACATGGAGACT???GCAGGCCC????CAAGAGGG?CATGCTTCTCTGAAATGCATTAGCAGTG?CCTGTCATGTGC-ATC??TGGCTTGGTG?TGATAGT??AATCTACGCCTGGCGACGTTG?CACATT??GAATCTGCTCACAATCGTCCAACATC?CTGGACAA????CATTGACAATTTGACCTCAAATCA Pluteus_castri_TNSF17602_Japan TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAAACCCG?GTG?TGGTTG??TGCTGGCCCTTT??????GGGCAAGTGCAC?ACCCGCCATTTGTTTCATCCTTC?TTTCCACCTGTGCA?CTGCTGTGGGCT-ACCCAGCCAGCCTGGCATG??????????????????????????????CGGCTGGAACA?AGTG?GTCCACGTTTT?CTCATC?AACTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCTTC??ATGGCCTTATAAAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTGAATCATCAACCCCACTTC?TT?-TGTGGAGTCGGGGGTGCTTGGACATGGAGACT???GCAGGCCC????CAAGAGGG?CATGCTTCTCTGAAATGCATTAGCAGTG?CCTGTCATGTGC-ATC??TGGCTTGGTG?TGATAGT??AATCTACGCCTGGCGACGTTG?CACATT??GAATCTGCTCACAATCGTCCAACATC?CTGGACAA????CATTGACAATTTGACCTCAAATCA Pluteus_conizatus_var_africanus_Thoen5250_Congo TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAAACCCG?GTG?TGGTTG??TGCTGGCCCTTTC??CTAGGGCATGTGCAC?ACCCACCATTTGTTTCATCCTTC?TTCCCACCTGTGCA?CTTCTGTAGGAC-ACCCAGCCGGCCTGGCATG??????????????????????????????CGGTTGGAGCA-AGTG?TTCTACGTTTT?CTCATC?AGCTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCTTC??ATGGCCTTATAAAA?CTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTGAATCATCAACCCCACTTC?CT?-TGTGGAGT??CGGGTGCTTGGATATGGAGAAT???GCAGGCCCTC??T???TGGG?TCAGCTTCTCTGAAATGCATTAGCAGAG?CCCATCCTGTGC-ATCTGTGGCTTGGTG?TGATAGT???ATCTACGCCTAGCGATGTTG?TGCATTCAAAATCTGCTGCCAGTCGTCCACCTTCTCTGGACA???CTTACTGACAATTTGACCTCAAATCA Pluteus_dietrichii_JLS1624_Spain TAGGTGAACCTGCGGAAGGATCA?TTAGTGAATAAA?CCGTGTG??GGTTG??TGCTGACCTCCT???CGGAGGTATGTGCAC?GCTCATCA?ATGTTTCATTCATC?CTCTCACCTGTGCACACACTGTAGGCC-AGACCATCAGGGTCTC?TGGTGTGAGGAATGTGCTCCAATGCTGGGGCTTTCCTTGGATAGTCTG?GTCTATGTCTT???TACT?CACACC?AT-GTATGTCATTGAATGTATGTTCTGAGCTCC?????GGCTC-ATAAAACAATATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCCTCAACTTACCTCTCTTG-TTGGAGAGCTGTGAGGCTTGGATGTGGGAGCT???GCTGGC-TGT?????CACGG?TCAGCTCTTCTGAAATGCATTAGCAGAGCCCTG-CATGCGC-ATCTGTCACCTGGTA?TGATAGT??CATCTATGCCATGT?GCGTTG?TGCAT????GATCTGCTTCGAACCGTCTTGTCT??CAAGACAA??CACTCTGACGATTTGACC???????? Pluteus_granularis_SF20_Illinois TAGGTGAACCTGCGGAAGGATCA?TTAATGAACAAA?CCG?GTG?TGGTTG??TGCTGGCCTTTT???CGAGGGCATGTGCAC?GCCCGCCA?TTGTTTCATCCTTCTCTTCCACCTGTGCACCCCCTGTAGGCC-AACCAGTCAGTCTGGCTTGGTGTGAGGGC???GGTTCA?CCCCGCCCTTGGATTGGTA???ATGG?TCCTACGTTTT?CTCATC?AATGCCTCATGAATGTA?TAGAATGTATGTAATGGGCTC????AT?GCCT-ATAAAACCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACCCATCTAC?CT?-TGCGGTGG?CTGGGTG-TTGGACTTGGAGGCTTCTGCTGGTCC?????CTGTTGA?CCAGCTCCTCTGAAATGCATTAGCAGGGTTCCATTGTGTGCAATCTGCGTCCTGGTG?TGATAGT??AATCTACGCCTGACACTGCTG?CACGTC???AACCTGCTTCTAGTCGTCCACCTT??CTGGACAA???CACCTGACCATTTGACCTCAAATCA Pluteus_granularis_Strack7_Illinois TAGGTGAACCTGCGGAAGGATCA?TTAATGAACAAA?CCG?GTG?TGGTTG??TGCTGGCCTTTT???CGAGGGCATGTGCAC?RCCCGCCA?TTGTTTCATCCTTCTCTTCCACCTGTGCACCCCCTGTAGGCC-AACCAGTCAGTCTGGCTTGGTGTGAGGGC???GGTTCA?CCCCGCCCTTGGATTGGTA???ATGG?TCCTACGTTTT?CTCATC?AATGCCTCATGAATGTA?TAGAATGTATGTAATGGGCTC????AT?GCCT-ATAAAACCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACCCATCTAC?CT?-TGCGGTGG?CTGGGTG-TTGGACTTGGAGGCTTCTGCTGGTCC?????CTGTTGA?CCAGCTCCTCTGAAATGCATTAGCAGGGTTCCATTGTGTGCAATCTGCGTCCTGGTG?TGATAGT??AATCTACGCCTGACACTGCTG?C?????????????????????????????????????????????????????????????????????? Pluteus_granulatus_AJ203_Spain TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAAA?CCG?GTG?TGGCTAAGTGCTGGCCTCCT???TGGAGGCATGTGCACGGCCCGCCA?TTGTTTCATCCTTC??TTCCACCTGTGCA?CTCCTGTAGGTCCACTCTGGTGCATGTGC???????????????????????????????????ATTGGATT??TTGGCGCCTACGTTAT?ACCATC?CACACC?ATTGAA?GTT?CAGAATGTATGTATTGGGCACTA??GTTGCCT-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCACC?TTC-TG---ATG???AGGGGGTTGGACTTGGAGG?TTTTGCTGGCCCCTCTTTGAGGGGACCGGCTCCTCTGAAATGCATTAGCAGGGGCTCATCTTGTGCGATCTGCGGCCTTGTG?TGATAAT???ATCTACACCTGGCTTGGTCG?TGCGTA??TACCCAGCTTCCAGCCGTCCATACTG?TTGGACAAATTCACCTGACCACTTGACCTCAAATCA Pluteus_granulatus_Russia_FJ774086 TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAAA?CCG?GTG?TGGCTAAGTGCTGGCCTCCT???TGGAGGCATGTGCACGGCCCGCCA?TTGTTTCATCCTTC??TTCCACCTGTGCA?CTCCTGTAGGTCCACTCTGGTGCATGTGC???????????????????????????????????ATTGGATT??TTGGCGCCTACGTTAT?ACCATC?CACACC?ATTGAA?GTT?CAGAATGTATGTATTGGGCACTA??GTTGCCT-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCACC?TTC-TG---ATG???AGGGGGTTGGACTTGGAGG?TTTTGCTGGCCCCTCTTTGAGGGGACCGGCTCCTCTGAAATGCATTAGCAGGGGCTCATCTTGTGCGATCTGCGGCCTTGTG?TGATAAT???ATCTACACCTGGCTTGGTCG?TGCGTA??TACCCAGCTTCCAGCCGTCCATACTG?TTGGACAAATTCACCTGACCACTTGACCTCAAATCA Pluteus_heteromarginatus_AJ172_Florida TAGGTGAACCTGCGGAAGGATCA?TTATTGAACAAA?CCG?GCGTTGGCTG??AGCTGGCCTTTT???CGGAGGCATGTGCACGGCCCGCCA?TTGTTTCATCCTTCTCTTCCACCTGTGCA?CTTCTGTGGGCCCACTCCAGCGCACGTGT???????????????????????????????????GCTGGACT??CTGGTGCCTACGTCTC?ACTACC?TACACC?ATTGAATGTT?CAGAGCGCATGAATAGGGCATT???CTTGCCT-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCATC?TT?-TG?--??????AGAGGGTTGGACTTGGAGG?TTCTGCTGGCCCT???CTCCGGGA?TCGGCTCCTCTGAAAAGCATTAGCAGGGGCTCATATTGTGCATTCTGCAGCCTTGTG?TGATAGT??CATCTACACTCGGCGCGGTCA?CATT????CACCCAGCTTCCAGCCGTCCGCT?????CGGACAA???CATCTGACCACTTGACCTCAAATCA Pluteus_leoninus_AJ_212_Spain TAGGTGAACCTGCGGAAGGATCATTTAGTGAACAA?CCCG?GTG?CGGTTG??TGCTGGCCTCCTCTGCCGAGGCATGTGCAC?GCCCACCATTTGTTTCATCCTTC?TTCCCACCTGTGCA?CTTCTGTAGGCC-ACCCAGCCAGCCTGGCATG??????????????????????????????CGGCTGGAACACAGTG?GTCTACGTTTT?CTCATC?AACTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCATA??ATGGCCTTATAAAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACCCCACTCC?CT?-TGTGGTAT??GGGGTGTTTGGACTTGGAGATT???GCAGGCCCAC??CAGCTGGG?CCAGCTCCTCTGAAATGCATTAGCAGAG?CCCATCATGTGC-ATCTGTGGCTTGGTG?TGATAGTA?AATCTATACCTAGCAATGTTG?TGCATC??GAATCTGCTGCCAGTCGTCCGCTT?C?GTGGACA???ATCATTGACCATTTGACCTCAAATCA Pluteus_leoninus_DrewH_Idaho TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAA?CCCG?GTG?CGGTTG??TGCTGGCCTCCTCTGCCGAGGCATGTGCAC?GCCCACCATTTGTTTCATCCTTC?TTCCCACCTGTGCA?CTTCTGTAGGCC-ACCCAGCCAGCCCGGCATG??????????????????????????????CGGCTGGA??ACAGTG?GTCTACGTTTT?CTCATC?AACTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCATA??ATGGCCTTATAAAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACCCCACTCC?CT?-TGTGGTAT??GGGGTGTTTGGACTTGGAGATT???GCAGGCCCAC??CAGTTGGG?CCAGCTCCTCTGAAATGCATTAGCAGAG?CCCATCATGTGC-ATCTGTGGCTTGGTG?TGATAGTA?AATCTACACCTAGCAATGTTG?TGCATC??GAATCTGCTGCCAGTCGTCCGCTT?C?GTGGACA???ACCATTGACCATTTGACCTCAAATCA Pluteus_leoninus_Halling6546_NewYork TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAA?CCCG?GTG?CGGTTG??TGCTGGCCTCCTCTGCCGAGGCATGTGCAC?ACCCACCATTTGTTTCATCCTTC?TTCCCACCTGTGCA?CTTCTGTAGGCC-ACCCAGCCAGCCCGGCATG??????????????????????????????CGGCTGGA??ACAGTG?GTCTACGTTTT?CTCATC?AACTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCATA??ATGGCCTTATAAAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACCCCACTCC?CT?-TGTGGTAT??GGGGTGTTTGGACTTGGAGATT???GCAGGCCCAC??CAGCTGGG?CCAGCTCCTCTGAAATGCATTAGCAGAG?CCCATCATGTGC-ATCTGTGGCTTGGTG?TGATAGTA?AATCTACACCTAGCAATGTTG?TGCATC??GAATCTGCTGCCAGTCGTCCGCTT?C?GTGGACA???ATCATTGACCATTTGACCTCAAATCA Pluteus_leoninus_Josserand_sn_France TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAA?CCCG?GTG?CGGTTG??TGCTGGCCTCCTCTGCCGAGGCATGTGCAC?GCCCACCATTTGTTTCATCCTTC?TTCCCACCTGTGCA?CTTCTGTAGGCC-ACCCAGCCAGCCTGGCATG??????????????????????????????CGGCTGGAACACAGTG?GTCTACGTTTT?CTCATC?AACTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCATA??ATGGCCTTATAAAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACCCCACTCC?CT?-TGTGGTAT??GGGGTGTTTGGACTTGGAGATT???GCAGGCCCAC??CAGCTGGG?CCAGCTCCTCTGAAATGCATTAGCAGAG?CCCATCATGTGC-ATCTGTGGCTTGGTG?TGATAGTA?AATCTATACCTAGCAATGTTG?GGCATC??GAATCTGCTGCCAGTCGTCCGCTT?C?GTGGACA???ATCATTGACCATTTGACCTCAAATCA Pluteus_leoninus_SF17_Michigan TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAA?CCCG?GTG?CGGTTG??TGCTGGCCTCCTCTGCCGAGGCATGTGCAC?ACCCACCATTTGTTTCATCCTTC?TTCCCACCTGTGCA?CTTCTGTAGGCC-AYCCAGCCAGCCCGGCATG??????????????????????????????AGGCTGGA??ACAGTG?GTCTACGTTTT?CTCATC?AACTCC?AATGAATGTG?TAGAGTGTAGAACAAGGTCCATA??ATGGCCTTATAAAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACCCCACTCC?CT?-TGTGGTAT??GGGGTGTTTGGACTTGGAGATT???GCAGGCCCAC??CAGCTGGG?CCAGCTCCTCTGAAATGCATTAGCAGAG?CCCATCATGTGC-ATCTGTGGCTTGGTG?TGATAGTA?AATCTACACCTAGCAATGTTG?TGCATC??GAATCTGCTGCCAGTCGTCCGCTT?C?GTGGACA???ATCATTG??????????????????? Pluteus_longistriatus_Minnis309203_Missouri TAGGTGAACCTGCGGAAGGATCA?TTATTGAACAAA?CCG?GTG?TGGCTG??AGCTGGCCTTTT???CGAAGGCATGTGCACGGCCCGCCA?TTGTTTCATCCTTCTCTTCCACCTGTGCA?CTTCTGTGGGCCCACTCCAGCACACGTGC???????????????????????????????????GCTGGAAC??CTGGTGCCTACGTTTC?ACTATC?TACACC?ATTGAATGTT?CAGAATGCATGAATTGGGCGTT???ACTGCCT-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCATC?TT?-TG?--??????AGAGGGTTGGACTTGGAGG?TTCTGCTGGCCCT???CTCCGGGACCCGGCTCCTCTGAAAAGCATTAGCAGGGGCTCATCCTGTGCGATCTGCAGCCTTGTG?TGATAGT??TATCTACACTCGGCGCGGTCA?CATT????CACCCAGCTTACAGCCGTCTGCCAGC?GCGGACAA?CTTATTTGACCACTTGACCTCAAATCA Pluteus_longistriatus_SP393700_Brazil TAGGTGAACCTGCGGAAGGATCA?TTATTGAACAAA?CCG?GTG?TGGCTG??AGCTGGCCTTTT???CGAAGGCATGTGCACGGCCCGCCA?TTGTTTCATCCTTCTCTTCCACCTGTGCA?CTTCTGTGGGCCCACTCCAGCACACGTGC???????????????????????????????????GCTGGAAC??CTGGTGCCTACGTTTC?ACTATC?TACACC?GTCGAATGTT?CAGAATGCATGAATTGGGCGTT???ACTGCCT-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCATC?TT?-TG?--??????AGAGGGTTGGACTTGGAGG?TTCTGCTGGCCCT???CTCCGGGA?CCGGCTCCTCTGAAAAGCATTAGCAGGGGCTCATCTTGTGCGATCTGCAGCCTTGTG?TGATAGT??TATCTACACTCGGCGCGGTCA?CATT????CACCCAGCTTACAGCCGTCTGCCAGC?GCGGACAA?CTTATTTGACCACTTGACCTCAAATCA Pluteus_longistriatus_SP394004_Brazil TAGGTGAACCTGCGGAAGGATCA?TTATTGAACAAA?CCG?GTG?TGGCTG??AGCTGGCCTTTT???CGAAGGCATGTGCACGGCCCGCCA?TTGTTTCATCCTTCTCTTCCACCTGTGCA?CTTCTGTGGGCCCACTCCAGCACACGTGC???????????????????????????????????GCTGGAAC??CTGGTGCCTACGTTTC?ACTATC?YACACC?GTCGAATGTT?CAGAATGCATGAATTGGGCGTT???ACTGCCT-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCATC?TT?-TG?--??????AGAGGGTTGGACTTGGAGG?TTCTGCTGGCCCT???CTCCGGGA?CCGGCTCCTCTGAAAAGCATTAGCAGGGGCTCATCTTGTGCGATCTGCAGCCTTGTG?TGATAGT??TATCTACACTCGGCGCGGTCA?CATT????CACCCAGCTTACAGCCGTCTGCCAGC?GCGGACAA?CTTATTTGACCACTTGACCTCAAATCA Pluteus_longistriatus_SP394386_Brazil TAGGTGAACCTGCGGAAGGATCA?TTATTGAACAAA?CCG?GTG?TGGCTG??AGCTGGCCTTTT???CGAAGGCATGTGCACGGCCCGCCA?TTGTTTCATCCTTCTCTTCCACCTGTGCA?CTTCTGTGGGCCCACTCCAGCACACGTGC???????????????????????????????????GCTGGAAC??CTGGTGCCTACGTTTC?ACTATC?TACACC?GTCGAATGTT?CAGAATGCATGAATTGGGCGTT???ACTGCCT-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCATC?TT?-TG?--??????AGAGGGTTGGACTTGGAGG?TTCTGCTGGCCCT???CTCCGGGA?CCGGCTCCTCTGAAAAGCATTAGCAGGGGCTCATCTTGTGCGATCTGCAGCCTTGTG?TGATAGT??TATCTACACTCGGCGCGGTCA?CATT????CACCCAGCTTACAGCCGTCTGCCAGC?GCGGACAA?CTTATTTGACCACTTGACCTCAAATCA Pluteus_pantherinus_TNSF12882_Japan TAGGGGAACCTGCGGAAGGATCA?TTATTGAACAAA?CCG?GTG?TGGTTG??TGCTGGTCTTTT???CGGAGGCATGTGCAC?ACCCGCCA?TTGTTTCATCCTTC???TCCACCTGTGCA?CTTTTGTAGACC-AGCTTGTCGGGCCAGCTCGGTGTGAGGGT???GGCTCATCCCCACCTTTGGACAGGCAGTCATGGT--CTATGTCTT?CTCATC?AACCCG?AATGTATGTG?CAGAATGTAAGAATAAGGCTCAT??GTAGCCT-ATAAA-TCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCCTCAAACCTCCTTC?CTC-TGTGGATGGGCGGATG-TTGGACTTGGAGGCT???GCCGTTCG???????TTTAA?CCGGCTCCTCTGAAATGCATTAGCAGGGGCCATTCGTGTGC-ATCTGTGGCTTGGTG?TGATAGT???ATCTACGCCTTGCAACTTTG?CGCTGC???GACCCGCTTCCAGCCGTCCCT?????CCGGACA???TAATCTGACCATTTGACCTCAAATCA Pluteus_plautus_AJ209_Spain TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAAA?CCG?GTG?TGGCTAAGTGCTGGCCTTCT???TGGAGGCATGTGCACGGCCCGCCA?TTGTTTCATCCTTC???TCCACCTGTGCA?CTTCTGTGGGTCCAGTCCAGCGCGCGTGT???????????????????????????????????GCTGGGCC??CTGGTACCTACGTTTTCACTACC?CACACA?ATTGAATGTT?CAGAATGTATGTATCGGGCATT???CTTGCCC-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCGGC?TT?-CG?--??????AGAGGGTTGGACTTGGAGG?CTCTGCTGGCCCC???TTCTGGGG?CCGGCTCCTCTGAAAAGCATTAGCAGGG?CCCACGTTGTGCGATCTGCASCCTTGTG?TGATAGT??CATCTACACTTGGCTCGGTTG?CGTCAAATTGCCAAGCTTACAGTCGTCTGCTGTT?GTGGACAA?TTTACTTGACCAATTGACCTCAAATCA Pluteus_plautus_Russia_FJ774076 TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAAA?CCG?GTG?TGGCTAAGTGCTGGCCTTCT???TGGAGGCATGTGCACGGCCCGCCA?TTGTTTCATCCTTC???TCCACCTGTGCA?CTTCTGTGGGTCCAGTCCAGCGCGCGCGT???????????????????????????????????GCTGGGCC??CTGGTACCTACGTTTTCACTACC?CACACA?ATTGAATGTT?CAGAATGTATGTATCGGGCATC???CTTGCCC-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCGTC?TT?-CG?--??????AGAGGGTTGGACTTGGAGG?CTCTGCTGGCCCC???TTCTGGGG?CC?GCTCCTCTGAAAAGCATTAGCAGGG?CCCACGTTGTGCGATCTGCAGCCTTGTG?TGATAGT??CATCTACACTTGGCTCGGTTG?CGTCGAATTGCCGAGCTTACAGTCGTCTGCTGTT?GTGGACAA?TTTACTTGACCAATTGACCTCAAATCA Pluteus_semibulbosus_Russia_FJ774080 TAGGTGAACCTGCGGAAGGATCA?TTATTGAACAAA?CCG?GTGTCGGCTG??AGCTGGCCTCTT???TGGAGGCATGTGCACGGCCCACCA?TTGTTTCATCCTTCTCTTCCACCTGTGCA?CTTCTGTGGGCCCACTCCAGCGCACGTGC???????????????????????????????????GCTGGAAT??CTGGCGCCTACGTTTT?ACTACC?CACACC?ATTGAATGTT?AAGAACGCATGAATAGGGCATT?????TGCCC-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCATC?TT?-TG?--??????AGAGGGTTGGACTTGGAGG?TTCTGCTGGCCCCGCTCTCTGGGA?CCGGCTCCTCTGAAATGCATTAGCAGGGGCTCATCTTG?GCGATCTGCAGCCTAGTG?TGATAGTCATATCTACACTTGGAGAGGTCCCCATT????CACCCAGCTTCCAGCCGTCCGCTTGC?GTGGACAA???CACTTGACCACTTGACCTCAAATCA Pluteus_seticeps_Shaffer798_Illinois TAGGTGAACCTGCGGAAGGATCA?TTAGTGAATAAACTTGTGTG??GGTTG??TGCTGGCCTCTT???CGGAGGTATGTGCAC?GCCTGCCA?TTGTTTCATTCTCC?CTTCCACCTGTGCACTAACTGTAGACCGAGCTTGCTAGGCTGTC-TGGCGTGAGGACT??GCTTTGTT??????GCTGTTCTCGGGCGGCTTG?GTCTATGTCTT???TATCAAACGCC?ATTGTATGTGATTGAATGTCTGTTCTGGGTTCTTTACAGACCC-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCCTCAACCAACCTCTCTTG-TAGGG?????ATTGGTGTTGGATGTGGAAGTT???GCTGGCTTG???TCGCAAAG?TCGGCTCTTCTCAAATGCATTAGCAGGA?CC??????GCGCCATC?GCAGCTTGGTATTGATAGT??TGTCGTTACCAGGTTGGGAGAGAGGCAATGTGTTCAGCTTCTAGCCGTCTCTTCA??TGGGACAA???TTCCTGACGATTTGACCTCAAATCA Pluteus_sp_I_TNSF12365_Japan TAGGTGAACCTGCGGAAGGATCA?TTATTGAAAAAA?CTG?GCGTTGGCTG??AGCTGGCCTTCT???CGGAGGCATGTGCACGGTCCGCCA?TTGTTTCATCCTTCTCTTCCACCTGTGCA?CTTCTGTGGGTCCACTCCAGCGCGCGTGC???????????????????????????????????GCTGGAAC??CTGGCGCCTACGTTTT?ACTACC?AACACC?ATTGAATGTT?CAGAATGCATGAATGGGACTTT???GTTGCCC-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCATC?TTCTTG---??????AGAGGGTTGGACTTGGAGGTTTCTGCTGGCCCC???TTCTGGGGCCCGGCTCCTCTGAAAAGCATTAGCAGGGGCTCATATTGTGCGATCTGCGGCCTTGTG?TGATAGTC?TATCTACACTCGGCTCAGCCA?CATT????CACCCAGCTTCCAGCTGTCTGCTTGC?GCGGACAA?CTCA?TTGACCAATTGACCTCAAATCA Pluteus_sp_I_TNSF12372_Japan TAGGTGAACCTGCGGAAGGATCA?TTATTGAAAAAA?CTG?GCGTTGGCTG??AGCTGGCCTTCT???CGGAGGCATGTGCACGGTCCGCCA?TTGTTTCATCCTTCTCTTCCACCTGTGCA?CTTCTGTGGGTCCACTCCAGCGCGCGTGC???????????????????????????????????GCTGGAAC??CTGGCGCCTACGTTTT?ACTACC?AACACC?ATTGAATGTT?CAGAATGCATGAATGGGACTTT???GTTGCCC-ATAAAACCTTATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACACCTCATC?TTCTTG---??????AGAGGGTTGGACTTGGAGGTTTCTGCTGGCCCC???TTCTGGGGCCCGGCTCCTCTGAAAAGCATTAGCAGGGGCTCATATTGTGCGATCTGCGGCCTTGTG?TGATAGTC?TATCTACACTCGGCTCAGCCA?CATT????CACCCAGCTTCCAGCTGTCTGCTTGC?GCGGACAA?CTCA?TTGACCAATTGACCTCAAATCA Pluteus_umbrosus_AJ213_Spain TAGGTGAACCTGCGGAAGGATCA?TTAGTGAACAAA?CCG?GTG?TGGTTG??TGCTGGCCTTTT???CGGAGGCATGTGCAC?GCCCACCA?TTGTTTCATCCTTC???TCCACCTGTGCACCCCCTGTAGGCC-AGCCAGTCAGTCTGGCTCGGTGTGAGGGC???GGTTCA?CCCCGCTCTTGGACTGGTT???ATGG?TCCTACGTTTT?CTCATC?AATGCTTCATGAATGTA?TAGAATGTATGTAATGGGCTT????ATGGCCT-ATAAAACCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATCATCAACCCATCTAC?CT?-TGCAGTCG?GTGGGTG-TTGGACTTGGAGGCTTCTGCTGGTCCA????CTGTTGA?CCAGCTCCTCTTAAATGCATTAGCAGGG?CCCATCGTGTGCAATCTGCGTCCTGGTG?TGATAGTA?AATCTACACCTGGCACCGCTG?CACGTC???GACCTGCTGCTAGTCGTCCACCTT??GTGGACAA?CGCATCTGACCATTTGACCTCAAATCA ; END; BEGIN TREES; Title Pluteus_section_Hispidoderma_Consensus_Majrule; LINK Taxa = Pluteus_section_Hispidoderma; TRANSLATE 1 Pluteus_aff_leoninus_II_TNSF11908_Japan, 2 Pluteus_aff_leoninus_I_SF19_Illinois, 3 Pluteus_aff_leoninus_I_SF21_Illinois, 4 Pluteus_aff_semibulbosu_TNSF12393_Japan, 5 Pluteus_castri_Russia_FJ774077, 6 Pluteus_castri_TNSF17081_Japan, 7 Pluteus_castri_TNSF17602_Japan, 8 Pluteus_conizatus_var_africanus_Thoen5250_Congo, 9 Pluteus_dietrichii_JLS1624_Spain, 10 Pluteus_granularis_SF20_Illinois, 11 Pluteus_granularis_Strack7_Illinois, 12 Pluteus_granulatus_AJ203_Spain, 13 Pluteus_granulatus_Russia_FJ774086, 14 Pluteus_heteromarginatus_AJ172_Florida, 15 Pluteus_leoninus_AJ_212_Spain, 16 Pluteus_leoninus_DrewH_Idaho, 17 Pluteus_leoninus_Halling6546_NewYork, 18 Pluteus_leoninus_Josserand_sn_France, 19 Pluteus_leoninus_SF17_Michigan, 20 Pluteus_longistriatus_Minnis309203_Missouri, 21 Pluteus_longistriatus_SP393700_Brazil, 22 Pluteus_longistriatus_SP394004_Brazil, 23 Pluteus_longistriatus_SP394386_Brazil, 24 Pluteus_pantherinus_TNSF12882_Japan, 25 Pluteus_plautus_AJ209_Spain, 26 Pluteus_plautus_Russia_FJ774076, 27 Pluteus_semibulbosus_Russia_FJ774080, 28 Pluteus_seticeps_Shaffer798_Illinois, 29 Pluteus_sp_I_TNSF12365_Japan, 30 Pluteus_sp_I_TNSF12372_Japan, 31 Pluteus_umbrosus_AJ213_Spain; TREE MajRule = (28,9,((((((5,6,7),8),((((16,(17,19)),(18,15)),(2,3)),1)),((11,10),31)),((13,12),((26,25),(((27,4),(14,(20,(22,21,23)))),(29,30))))),24)); END; BEGIN PAUP; OUTGROUP Pluteus_seticeps_Shaffer798_Illinois Pluteus_dietrichii_JLS1624_Spain; SET CRITERION = PARSIMONY MAXTREES = 1000 INCREASE = AUTO; HSEARCH ADDSEQ = RANDOM NREPS = 1000 SWAP = TBR NCHUCK = 2 CHUCKSCORE = 1; ROOTTREES ROOTMETHOD = OUTGROUP; SAVETREES FILE = Pluteus_Analysis.tre BRLENS = yes; CONTREE / TREEFILE = Pluteus_Consensus_Strict.tre; CONTREE / STRICT = no MAJRULE = yes TREEFILE = Pluteus_Consensus_Majrule.tree; LOG FILE = Pluteus_PBS.log; BOOTSTRAP TREEFILE = Pluteus_PBS.out NREPS = 1000 CONLEVEL = 50 SEARCH = heuristic / ADDSEQ = random NREPS = 10 SWAP = spr; SAVETREES FILE = Pluteus_bootstrap.tree FORMAT = Nexus APPEND = no REPLACE = yes; LOG STOP; BEGIN CODONS; CODONPOSSET * CodonPositions = N : 1 -682; CODESET * UNTITLED = Universal : all; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 682; END; BEGIN MacClade; Version 4.0 87; LastModified -944570720; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '12' Geneva '9' '168' '1' all; EditorPosition '44' '6' '867' '1415'; TreeWindowPosition '46' '6' '981' '1630'; ListWindow Characters closed Geneva '9' '50' '10' '273' '399' 000; ListWindow Taxa closed Geneva '9' '50' '25' '241' '452' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490'; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490'; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ChartWindowPosition '52' '30' '968' '1620'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols & / 10 ? -; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '2'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '753' '46' '115' '165'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' ( normal ) 0010; NexusOptions '0' '0' '100' 001011001; TipLabel '1'; TreeFont Geneva '9' ( normal ); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' ( normal ) Geneva '10' ( normal ) Geneva '9' ( normal ) Geneva '9' ( normal ) Geneva '9' ( bold ) Geneva '9' ( normal ) Geneva '9' ( normal ) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '-25001' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010111110111; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 682; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 682; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1277318258716; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5726653066415688009; tell It; setDefaultOrder 12 9 10 23 2 3 4 13 1 15 14 19 18 24 11 5 6 7 8 25 27 26 28 17 21 20 22 0 29 30 16; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 329422945452290094; checksumv 0 2 1479402810 null getNumChars 682 numChars 682 getNumTaxa 31 numTaxa 31 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 426216.0 sumSquares -2.305843009213689E19 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 339; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 694; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5726653066415688009 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5726653066415688009; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 311; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 941 627; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.sort; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #329422945452290094 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 148; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 941 627; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;