#NEXUS [written Mon Aug 09 17:52:11 BST 2010 by Mesquite version 2.6 (build 486) at casewell-PC/192.168.0.4] BEGIN TAXA; TITLE Echis; DIMENSIONS NTAX=27; TAXLABELS Echis_pyramidum_leakeyi_13B07_EPL00435 Echis_coloratus_13F10_ECO00419 Echis_carinatus_sochureki_11A11_ECS00134 Echis_coloratus_08A11_ECO00182 Echis_coloratus_05H12_ECO00182 Echis_ocellatus_06E11_EOC00049 Echis_ocellatus_05B06_EOC00049 Echis_ocellatus_03E02_EOC00049 Echis_ocellatus_10B04_EOC00315 Echis_pyramidum_leakeyi_03A08_EPL00141 Echis_pyramidum_leakeyi_13A12_EPL00502 Echis_coloratus_11A06_ECO00285 Echis_coloratus_13E06_ECO00285 Echis_ocellatus_02F07_EOC00181 Echis_ocellatus_02E07_EOC00185 Echis_carinatus_sochureki_11F09_ECS00186 Echis_coloratus_01C11_ECO00042 Echis_coloratus_03G08_ECO00112 Echis_coloratus_01G12_ECO00013 Echis_coloratus_04E01_ECO00164 Echis_pyramidum_leakeyi_03H09_EPL00098 Echis_coloratus_04E05_ECO00161 Echis_carinatus_sochureki_07B03_ECS00244 Echis_coloratus_05D01_ECO00206 Echis_carinatus_sochureki_09A02_ECS00105 Echis_coloratus_03A12_ECO00135 Homo_sapiens_13897994 ; END; BEGIN CHARACTERS; TITLE Echis_serine_protease_amino_acid_alignment; DIMENSIONS NCHAR=260; FORMAT DATATYPE = Protein INTERLEAVE GAP = - MISSING = ?; MATRIX Echis_pyramidum_leakeyi_13B07_EPL00435 MVLIRVLANLLVLQLSYAQKSSELVIGGAECDINEHRSLALVFNSSG--FICGGTLINHEWVLSAAHCDVENMQIYLGLH Echis_coloratus_13F10_ECO00419 MVLIIVLANLLVLQLSYAQKSSELVIGGAECNINEHRSLALVFNSSG--FICGGTLINHEWVLSAAHCDVENMQIYLGLH Echis_carinatus_sochureki_11A11_ECS00134 MVLIRVLANLLVLQLCYAQKSSELVIGGAECNINEHRSLALVFNSSG--FICGGTLINQEWVLSAAHCDVENMQIYLGLH Echis_coloratus_08A11_ECO00182 MVLIRVLANLLVLQLSYAQKSSELVIGGAECDINEHRSLVLVYNASG--FFCGGTLINREWVLSAAHCYMKNMRIYLGLH Echis_coloratus_05H12_ECO00182 MVLIRVLANLLVLQLSYAQKSSELVIGGAECDINEHRSLVLVYNASG--FLCGGTLINREWVLSAAHCYMKNMRIYLGLH Echis_ocellatus_06E11_EOC00049 MVLIRVLANLLVLQLSYAQMSSELVVGGGECNRNRHRSLALLYNSSG--TLCGGTLIHEEWVLSAAHCDMENMKIYLGLH Echis_ocellatus_05B06_EOC00049 MVLIRVLANLLVLQLSYAQMSSELVVGGGECNRNRHRSLALLYNSSG--TLCGGTLIHEEWVLSAAHCDMENMKIYLGLH Echis_ocellatus_03E02_EOC00049 MVLIRVLANLLVLQLSYAQMSSELVVGGGECNRNRHRSLALLYNSSG--TLCGGTLIHEEWVLSAAHCDMENMKIYLGLH Echis_ocellatus_10B04_EOC00315 MVLIRVLANLLVLQLSYAQKSSELVIGGAECDINEHRSLILVYNASG--YYCSGTLIHEEWVLTAVHCYVENMRIHLGMH Echis_pyramidum_leakeyi_03A08_EPL00141 MVLIRVLANLLVLQLSYAQKSSELIIGGAECNINEHRSLILVYNASG--YYCSGTLINQEWVLTAVHCYVENMRIHLGVH Echis_pyramidum_leakeyi_13A12_EPL00502 ????????????????????????????AECDINEHRSLILVYNASG--YYCSGTLINQEWVLTAVHCYVENMRIHLGVH Echis_coloratus_11A06_ECO00285 MVLIRVLANLLVLQLSYAQRSSELVTGGAECDINEHPFLVALHTARSKRFHCTGTLIDNQWVLTAARCDRKNIRIKVGVH Echis_coloratus_13E06_ECO00285 MVLIRVLANLLVLQLSYAQRSSELVTGGAECDINEHPFLVALHTARSKRFHCTGTLIDNQWVLTAARCDRKNIRIKVGVH Echis_ocellatus_02F07_EOC00181 MVLIRVLANLLVLQLSYAQKSSELVAGGAECDKNEHPFLVALHTARSKRFHCTGTLIGKQWVLTAARCNKKNIRVKIGMH Echis_ocellatus_02E07_EOC00185 MVLIRSLPHRVILRFCYSPNSYQLFSERAESDINELPFLVSLLTARSKRFHCPGTLIGKQWVLTAARCIKKNIRVKIGMH Echis_carinatus_sochureki_11F09_ECS00186 MVLIRMLANLLVLQLSYAQKSSELVTGGDECNINEHPFLVALHTARSKRFHCTGTLINEQWVLTAARCNRKNIRIKLGVH Echis_coloratus_01C11_ECO00042 MVLIRVLANLLVLQLSYAQKSSELIIGGAECNINDHRFLVALYNYRTRAFLCGGTLINQEWVLSAAHCNRKSLQIKIGMH Echis_coloratus_03G08_ECO00112 MVLIRVLANLLVLQLSYAQKSSELIIGGAECDINEHRSLALVYHGN---YQCGGTLINQEWVLTAAHCDGKTMKIHFGVH Echis_coloratus_01G12_ECO00013 MVLIRVLANLLVLQLSYAQKSSELVIGGSPCNITEHRSLVVMFNSSA--FLCAGTLINQEWVLTAAHCDSDNFQMLLGVH Echis_coloratus_04E01_ECO00164 MVLIRVLANLLVLQLSYAQKSSELVIGGAECNINEHRSLALIYNSTSMWFHCSGTLLNQEWVLTAAHCEMENMQIYLGVH Echis_pyramidum_leakeyi_03H09_EPL00098 MVLIRVVANLLVLQLSYAQKSSELVIGGAECDINEHRSLALIYNSTSMWFHCSGTLLNEEWVLTAAHCEMENMQIYLGVH Echis_coloratus_04E05_ECO00161 MVLIRVLANLLVLQLSYAQKSSELVIGGAECNINEHRSLALIYNSTSMWFHCSGTLLNQEWVLTAAHCEMENMQIYLGVH Echis_carinatus_sochureki_07B03_ECS00244 MVLIRVLANLLVLQLSYAQKSSELVIGGAECNINEHRFLAFVYNSSG--FACGGTLINEEWVLTAAHCDRENIRIYFGLH Echis_coloratus_05D01_ECO00206 MVLIRVLANLLVLQLSYAQKSSELVTGGAECDINEHPFLVALYTASSSTFHCAGTLINQEWVLTAVHCDRKKIRIKLGMH Echis_carinatus_sochureki_09A02_ECS00105 MVLIRVLANLLVLQLSYAQKSSELVTGGAECDINEHRFLVALYTASSSTFHCAGTLINHEWVLTAVHCDRKNIRIKLGMH Echis_coloratus_03A12_ECO00135 MVLIRVLANLLVLHFSYAQKSSELVIGGAECNINGHRSLAVLHNSSG--LLCSGTLINEEWVLSAAHCDMENMQIYLGYH Homo_sapiens_13897994 MFLLLTALQVLAIAMTQSQEDENKIIGGHTCTRSSQPWQAALLAGPRRRFLCGGALLSGQWVITAAHCGRPILQVALGKH Echis_pyramidum_leakeyi_13B07_EPL00435 NFSPANKEHKKRVAKKKFFCLSSKSYTLWDKDIMLIKLNKPVRNSAHIEPLSLPSNPPRLHSVCRIMGWGSITSPNEKMS Echis_coloratus_13F10_ECO00419 NFSPPNKEHKKRVAKEKFFCLSSKSYTLWDKDIMLIKLNKPVKNSAHIEPLSLPSNPPRLHSVCRIMGWGSITSPNEKMS Echis_carinatus_sochureki_11A11_ECS00134 NFSPPNKEHKERVAKEKFFCLPSRNYTLWDKDIMLIKLNRPVKNSAHIAPLHLPSNPPRLGSVCRIMGWGSIISPNEKMS Echis_coloratus_08A11_ECO00182 NFSLPNNDQQRRGARETYFCLPSRNYTKWDKDIMLIKLNRPVNYSTHIAPLHLPSNPPHLGSVCHIMGWGAITSPNETHP Echis_coloratus_05H12_ECO00182 NFSLPNNDQQRRGARETYFCLPSRNYTKWDKDIMLIKLNRPVNYSTHIAPLRLPSNPPHLGSVCHIMGWGAITSPNETHP Echis_ocellatus_06E11_EOC00049 NLSLPNKDQQKREPRETHFCLPSRNYTLWDKDIMLIKLNRPVKSSPHIAPISLPSNPPRLRSVCHIMGWGAITSPNETYP Echis_ocellatus_05B06_EOC00049 NLSLPNKDQQKREPRETHFCLPSRNYTLWDKDIMLIKLNRPVNNSPHIAPISLPSNPPRLRSVCHIMGWGAITSPNETYP Echis_ocellatus_03E02_EOC00049 NLSLPNKDQQKREPRETHFCLPSRNYTLWDKDIMLIKLNRPVKSSPHIAPISLPSNPPRLRSVCHIMGWGAITSPNETYP Echis_ocellatus_10B04_EOC00315 NFSQRNEDEQRREASETYFCLPDRNYTRWDKDIMLIKLDRPVNNSPHIAPLSLPSNPPSVGSHCRIMGWGAITSPNKTFP Echis_pyramidum_leakeyi_03A08_EPL00141 NLRLRNKEEQRREASETYFCLPSRNYTRWDKDIMLIKLDRPVNNSTHIAPLSLPSNPPSVGSHCRIMGWGAITSPNVTFP Echis_pyramidum_leakeyi_13A12_EPL00502 NLRLRNKEEQRREASETYFCLPSRNYTRWDKDIMLIKLDRPVNNSTHIAPLSLPSNPPSVGSHCRIMGWGAITSPNVTFP Echis_coloratus_11A06_ECO00285 NKNKRNKDEMMRVPAEKFFCASSKTYTRWDKDIMLIRLKRPVNGSTHIAPLSLPSNPASVDSECRIMGWGTITTTKVTYP Echis_coloratus_13E06_ECO00285 NKNKRNKDEMMRVPAEKFFCASSKTYTRWDKDIMLIRLKRPVNGSTHIAPLSLPSNPASVDSECRIMGWGTITTTKVTYP Echis_ocellatus_02F07_EOC00181 NKNERTEDEMMRVAAEKFFCASSKTYTRWDKDIMLIKLKRPVNNRTHIAPLSLPSNPASVGSECRIMGWGTTTTTKVTYP Echis_ocellatus_02E07_EOC00185 NQNERTDDEMMTVAAEKFFCASSKTYTIWDKDIMLIKLKRPVNNRTHIAPLSLPSNPASVGSECRIMGWGTTTTTKVTYP Echis_carinatus_sochureki_11F09_ECS00186 NKNVRNENEEMRVPAEKVFCVSSKTYTRWDKDIMLIKMKRPVNNSTHIAPLSLPSNPASVGSVCRIMGWGTITTTKVTYP Echis_coloratus_01C11_ECO00042 SKTAPNDDLQTRVPKETYFCLPNKNYTMWDKDIMLIKLNRPVNNSTHIAPISLPSNRPSLGSVCRIMGWGSIIPTNETYP Echis_coloratus_03G08_ECO00112 SKKKQNKDKQIRVPKEKFFCLPSRNYTMWDKDIMLIKLNKPVKNSTHIAPLSLPSNPPRLGSVCRIMGWGTISTTKVILP Echis_coloratus_01G12_ECO00013 SKKVLNEDEETREPKEKVYCVSHEKNTDWAKDIMLIKLNKPVKSSTHIAPLSLPSSPPSVGSVCRIMGWGTISSTELTYP Echis_coloratus_04E01_ECO00164 NKTKRNKDQQKRFPKKKYFCLKSKNFTLWDKDIMLIKLNRPVKSSTHIEPFSLPSSPPSVGSVCRIMGWGAINSPNETFP Echis_pyramidum_leakeyi_03H09_EPL00098 NKTKRNKEQQKRFPKKKYFCLKSKNFTLWDKDIMLIKLNRPVKSSTHIEPFSLPSSPPSVGSVCRIMGWGAINSPNETFP Echis_coloratus_04E05_ECO00161 NKTKRNKDQQKRFPKKKYFCLKSKNFTLWDKDIMLIKLNRPVKSSMHIEPFSLPSSPPSVGSVCRIMGWGAINSPNETFP Echis_carinatus_sochureki_07B03_ECS00244 NLKQPNKDRKRRVAEKKFFCQR--NHTMWDNDIMLIKLDKPVTSSTHIAPISLPSSPPSVGSVCRIMGWGSITSPNLTRP Echis_coloratus_05D01_ECO00206 SKNMPNEDEQIRVPKKKVFCHNSKFPNGMDKDIMLIKLRRPVNNSAHIAPISLPSSPSSPRSRCRIMGWGKISSAEDTDS Echis_carinatus_sochureki_09A02_ECS00105 SKNMPNEDEQIRVPKKKVFCHNSKFPNGMDKDIMLIRLRRPVNNSTHIAPVSLPSSPSSPRSRCRIMGWGKISSAEDTDS Echis_coloratus_03A12_ECO00135 NFSVPNDDEEIRVPVEKYFCLPRRNYIVWGKDIMLIKLNRSVNISTHIAPLSLPSSPPSLDSVCRIMGWGAITSPNETYS Homo_sapiens_13897994 NLR-RWEATQQVLRVVRQVTHPNYNSRTHDNDLMLLQLQQPARIGRAVRPIEVTQACASPGTSCRVSGWGTISSPIARYP Echis_pyramidum_leakeyi_13B07_EPL00435 YVPHCANINILRYSVCQAIYGGLPDKSRTLCAGILGRRIGSCKGDSGGPLICDGQIQGIVSWVSKPCAHHGAPGM????? Echis_coloratus_13F10_ECO00419 YVPHCANINILRYSVCQAIYGGLPDKSRTLCAGILGRRIGSCKGDSGGPLICDGQIQGIVSWVSKPCAHHGAPGMYTKVF Echis_carinatus_sochureki_11A11_ECS00134 YVPHCANINILRYSLCQVIYGGLPDKSRTLCAGILGTRIGSCKGDSGGPLICDGQIQGIVSWVSKPCAHHGAPGM????? Echis_coloratus_08A11_ECO00182 DVPHCANINILRYSICRAAYGGLPAQSRTLCAGILGRRIGSCKGDSGGPLICNGQIQGIVSWGAKVCARPRAPGLYTK?? Echis_coloratus_05H12_ECO00182 DVPHCANINILRYSICRAAYGGLPAQSRTLCAGILGRRIGSCKGDSGGPLICNGQIQGIVSWGAKVCARPRAPGLYTKVF Echis_ocellatus_06E11_EOC00049 DVPHCANINILRYSVCRAAFGRLPA?SRTLCAGILRGGIDTCLGDSGGPLICNGTIQGIVSWG????????????????? Echis_ocellatus_05B06_EOC00049 DVPHCANINILRYSVCRAAFGRLPAQSRTLCAGILRGGIDTCLGDSGGPLICNGQIQGIVSWGAEVCAKPHAPGLYTKVS Echis_ocellatus_03E02_EOC00049 DVPHCANINILRYSVCRAAFGRLPAQSRTLCAGILRGGIDTCLGDSGGPLICNGQIQGIVSWGAEVCAKPHAPGLYTKVS Echis_ocellatus_10B04_EOC00315 RVPHCANIEIIDYSVCRAAFGRLPAQSRTLCAGIL????????????????????????????????????????????? Echis_pyramidum_leakeyi_03A08_EPL00141 KVPHCANIEIIDYSVCRAAHGGLPAQSRTLCAGILQGGIGSCLGDSGGPLICDGQFQGIVAWGGDTCALPREPVMYTKVF Echis_pyramidum_leakeyi_13A12_EPL00502 KVPHCANIEIIDYSVCRAAHGGLPAQSRTLCAGILQGGIGSCLGDSGGPLICDGQFQGIVAWGGDTCALPREPVMYTKVF Echis_coloratus_11A06_ECO00285 DVPHCANIKIFDYSVCREAYRKLPEKSRTLCAGILERSIDSCKADTGGPLICNGQFQGIASWGGKPCAQPLKPALYTNVF Echis_coloratus_13E06_ECO00285 DVPHCANIKIFDYSVCREAYRKLPEKSRTLCAGILEGGIDSCKADTGGPLICNGQFQGIASWGGKPCAQPLKPALYTNVF Echis_ocellatus_02F07_EOC00181 DVPHCANIKIFDYSVCREAYRKLPEKSRILCAGIL?GGIDSCKADTGGPLICNGEFQGIASWGGQPCAQPLKPALYTNVF Echis_ocellatus_02E07_EOC00185 DVPHCANIKIFNYSVCREAYRKLPEKSIILCASI?????????????????????????????????????????????? Echis_carinatus_sochureki_11F09_ECS00186 DVPHCANIKIFDYSVCRGAYRKLPEKSRTLCAGVLEGGIDSCKADTGGPLICNGQFQGIASWGGQPCAQPLKPALYT??? Echis_coloratus_01C11_ECO00042 DVPHCTNINLLHYSVCRAAYPWLPVNSRTFCAGVLQGGKDTCKGDSGGPLICNGQFQGILSWGWTPCAQLLEPALYTKVF Echis_coloratus_03G08_ECO00112 DVPHCVNINLLNYSECQAVHPELPEKGRTLCAGVLEGGKDTCHGDSGGPLICNGQIQGISSWGGDPCAQPHEPAL????? Echis_coloratus_01G12_ECO00013 DVPHCANIKILNHKVCQAAHPKLLAESRTLCAGILEGGKDTCQGDSGGPLICDGQIQGIVSWGGHPCGEHLSPGVY???? Echis_coloratus_04E01_ECO00164 DVPHCANIKLYNYSVCREAYGGLPEKSRTLCAGVLEGGIDTCMADSGGPLICNGQFQGIVSWGRHPCAQPLLPAFYT??? Echis_pyramidum_leakeyi_03H09_EPL00098 EVPHCANIKLYNYSVCREAYGGLPEKSRTLCAGVLEGGIDTCMADSGGPLICNGQFQGIVAWGRHPCAQPLLPAFY???? Echis_coloratus_04E05_ECO00161 DVPHCANIKLYNYSVCREAYGGLPEKSRTLCAGVLEGGIDTCMADSGGPLICNGQFQGIVSWGRHPCAQPLLPAFY???? Echis_carinatus_sochureki_07B03_ECS00244 DVPHCAKIKILKHKVCQRAYKRNLANSKILCAGIRKGGKDTCQGDSGGPLICNGQFQGVVAGGATPCAQPRMPGIY???? Echis_coloratus_05D01_ECO00206 LVPHCANIFIVKHSWCEAIYPWVPADSRTLCAGILQGGKDTCHGDSGGPLICNGQIQGIVSGGSEPCGQRLKPAVYTKVF Echis_carinatus_sochureki_09A02_ECS00105 IVPHCANIFVVKHSWCEAIYPWVPADSRTLCAGILQGGKDTCHGDSGGPLICNGQIQGIVSGGSEPCGQRLKPAV????? Echis_coloratus_03A12_ECO00135 NVPHCANINILHSSVCRAAYGRLPGLSRTLCAGILRGGIDSCKGDSGGPLICNGQFQGIVSWGDHPCGQRRKPGIYTKVF Homo_sapiens_13897994 ASLQCVNINISPDEVCQKAYPRTITPG-MVCAGVPQGGKDSCQGDSGGPLVCRGQLQGLVSWGMERCALPGYPGVYTNLC Echis_pyramidum_leakeyi_13B07_EPL00435 ???????????????????? Echis_coloratus_13F10_ECO00419 DYTDWMQSIIAGSTTATCPP Echis_carinatus_sochureki_11A11_ECS00134 ???????????????????? Echis_coloratus_08A11_ECO00182 ???????????????????? Echis_coloratus_05H12_ECO00182 D?TDWIQSI?AGNTTA??PP Echis_ocellatus_06E11_EOC00049 ???????????????????? Echis_ocellatus_05B06_EOC00049 DYTDWIQSIIAGNTTATCPP Echis_ocellatus_03E02_EOC00049 DYTDWIQSIIAGNTT????? Echis_ocellatus_10B04_EOC00315 ???????????????????? Echis_pyramidum_leakeyi_03A08_EPL00141 DYTEWIQSIIAGNTAATCPP Echis_pyramidum_leakeyi_13A12_EPL00502 DYTEWIQSIIAGNTAATCPP Echis_coloratus_11A06_ECO00285 DYNDWIKSIIAGNTDATCPP Echis_coloratus_13E06_ECO00285 DYNDWIKSIIAGNTDATCPP Echis_ocellatus_02F07_EOC00181 DYSDW??????????????? Echis_ocellatus_02E07_EOC00185 ???????????????????? Echis_carinatus_sochureki_11F09_ECS00186 ???????????????????? Echis_coloratus_01C11_ECO00042 DYSDWIQSIIAGNTTASCPP Echis_coloratus_03G08_ECO00112 ???????????????????? Echis_coloratus_01G12_ECO00013 ???????????????????? Echis_coloratus_04E01_ECO00164 ???????????????????? Echis_pyramidum_leakeyi_03H09_EPL00098 ???????????????????? Echis_coloratus_04E05_ECO00161 ???????????????????? Echis_carinatus_sochureki_07B03_ECS00244 ???????????????????? Echis_coloratus_05D01_ECO00206 DYTDWIQSIIAGNTTVTCPP Echis_carinatus_sochureki_09A02_ECS00105 ???????????????????? Echis_coloratus_03A12_ECO00135 DYTDWVQSIIAGNTAVTCPP Homo_sapiens_13897994 KYRSWIEETMRDK??????? ; END; begin mrbayes; mcmc nruns = 4 ngen = 5000000 nchains = 4 samplefreq = 500 printfreq = 500 savebrlens = yes filename = Echis_ocellatus_SP_trans.nex; sumt burnin = 2000 contype = allcompat showtreeprobs = yes filename = Echis_ocellatus_SP_trans.nex; END; Begin mrbayes; outgroup Homo_sapiens_13897994; set autoclose = yes; begin mrbayes; prset aamodelpr = fixed ( WAG ); lset rates = gamma; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 260; END; BEGIN TREES; Title Echis_serine_protease_amino_acid_tree; LINK Taxa = Echis; TRANSLATE 1 Echis_pyramidum_leakeyi_13B07_EPL00435, 2 Echis_coloratus_13F10_ECO00419, 3 Echis_carinatus_sochureki_11A11_ECS00134, 4 Echis_coloratus_08A11_ECO00182, 5 Echis_coloratus_05H12_ECO00182, 6 Echis_ocellatus_06E11_EOC00049, 7 Echis_ocellatus_05B06_EOC00049, 8 Echis_ocellatus_03E02_EOC00049, 9 Echis_ocellatus_10B04_EOC00315, 10 Echis_pyramidum_leakeyi_03A08_EPL00141, 11 Echis_pyramidum_leakeyi_13A12_EPL00502, 12 Echis_coloratus_11A06_ECO00285, 13 Echis_coloratus_13E06_ECO00285, 14 Echis_ocellatus_02F07_EOC00181, 15 Echis_ocellatus_02E07_EOC00185, 16 Echis_carinatus_sochureki_11F09_ECS00186, 17 Echis_coloratus_01C11_ECO00042, 18 Echis_coloratus_03G08_ECO00112, 19 Echis_coloratus_01G12_ECO00013, 20 Echis_coloratus_04E01_ECO00164, 21 Echis_pyramidum_leakeyi_03H09_EPL00098, 22 Echis_coloratus_04E05_ECO00161, 23 Echis_carinatus_sochureki_07B03_ECS00244, 24 Echis_coloratus_05D01_ECO00206, 25 Echis_carinatus_sochureki_09A02_ECS00105, 26 Echis_coloratus_03A12_ECO00135, 27 Homo_sapiens_13897994; TREE con_all_compat = (27:1.329733,23:0.140704,((((((((((1:0.021254,2:0.00837)1.00:0.035603,3:0.034528)1.00:0.14415,(4:0.010994,5:0.006187)1.00:0.079732)0.84:0.038877,((6:0.009532,8:0.004094)1.00:0.011984,7:0.004205)1.00:0.11251)0.85:0.040857,26:0.175329)0.78:0.032863,(9:0.04998,(10:0.007408,11:0.005181)1.00:0.047111)1.00:0.168588)0.94:0.044076,((20:0.004076,22:0.008277)0.35:0.004622,21:0.029116)1.00:0.165651)0.95:0.045307,(((((12:0.011538,13:0.003809)1.00:0.046877,(14:0.010318,15:0.173052)1.00:0.05654)0.99:0.029808,16:0.044748)1.00:0.154137,(24:0.017449,25:0.022517)1.00:0.254951)0.95:0.06487,17:0.170702)0.95:0.053457)0.78:0.036315,18:0.20413)0.90:0.06159,19:0.228043)0.99:0.111267); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 260; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 260; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6531528161743818670; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6396214801154203663; checksumv 0 2 2039314201 null; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;