#NEXUS [written Tue Aug 10 16:03:40 BST 2010 by Mesquite version 2.6 (build 486) at casewell-PC/138.253.249.145] BEGIN TAXA; TITLE Elapid; DIMENSIONS NTAX=58; TAXLABELS Aipysurus_laevis_P08872 Aspidelaps_scutatus_P07037 Bungarus_fasciatus_P00627 Bungarus_fasciatus_P00628 Bungarus_fasciatus_P00629 Bungarus_fasciatus_P14411 Bungarus_fasciatus_P14615 Bungarus_fasciatus_P29601 Bungarus_multicinctus_P00606 Bungarus_multicinctus_P00617 Bungarus_multicinctus_P00618 Bungarus_multicinctus_P00619 Bungarus_multicinctus_P17934 Enhydrina_schistosa_P00610 Hemachatus_haemachatus_P00595 Laticauda_colubrina_P10116 Laticauda_colubrina_129479 Laticauda_laticaudata_129512 Laticauda_semifasciata_P00611 Laticauda_semifasciata_P00612 Laticauda_semifasciata_P00613 Maticora_bivirgata_P24644 Naja_atra_P00598 Naja_kaouthia_P00596 Naja_kaouthia_P00597 Naja_melanoleuca_P00599 Naja_melanoleuca_P00600 Naja_melanoleuca_P00601 Naja_mossambica_P00602 Naja_mossambica_P00603 Naja_mossambica_P00604 Naja_naja_P15445 Naja_nigricollis_P00605 Naja_oxiana_P25498 Naja_pallida_P14556 Notechis_scutatus_P00607 Notechis_scutatus_P00608 Notechis_scutatus_P00609 Notechis_scutatus_P08873 Notechis_scutatus_P20146 Oxyuranus_scutellatus_P00614 Oxyuranus_scutellatus_P00615 Pseudechis_australis_P04056 Pseudechis_australis_P04057 Pseudechis_australis_P20250 Pseudechis_australis_P20251 Pseudechis_australis_P20252 Pseudechis_australis_P20253 Pseudechis_australis_P20254 Pseudechis_australis_P20255 Pseudechis_australis_P20256 Pseudechis_australis_P20257 Pseudechis_porphyriacus_P20258 Pseudechis_porphyriacus_P20259 Pseudonaja_textilis_P23026 Pseudonaja_textilis_P23027 Pseudonaja_textilis_P30811 Oxyuranus_scutellatus_P00616_outgroup ; END; BEGIN CHARACTERS; TITLE 'Slowinski et al''s (1997) Elapid phospholipase A2 amino acid dataset alignment'; DIMENSIONS NCHAR=126; FORMAT DATATYPE = Protein INTERLEAVE GAP = - MISSING = ?; MATRIX Aipysurus_laevis_P08872 NLYQFDNMIQCANKGKRATWHYMDYGCYCGSGGSGTPVDALDRCCKAHDDCYGVAEDN-GCYP-----KWTLYSWQCTEN Aspidelaps_scutatus_P07037 NLYQFKNMIQCTVP-NRSWWHFADYGCFCGYGGSGTPVDELDRCCQTHDNCYSEAEKLSGCKP-----YIKTYSYDCS-Q Bungarus_fasciatus_P00627 NLYQFKNMIECA--GTRTWLAYVKYGCYCGPGGTGTPLDELDRCCQTHDHCYDNAKKFGNCIP-----YLKTYVYTCN-K Bungarus_fasciatus_P00628 NLLQFKNMIQCA--GSRLWVAYVKYGCYCGPGGTGTPLDQLDRCCQTHDHCYDNAKKFGNCIP-----YFKSYEYTCN-K Bungarus_fasciatus_P00629 NLLQFKNMIQCA--GSRLWVAYVKYGCYCGPGGTGTPLDQLDRCCQTHDHCYDNAKKFGNCIP-----YFKTYEYTCN-K Bungarus_fasciatus_P14411 NLYQFKNMIQCA--GTQLWVAYVNYGCYCGKGGSGTPVDQLDRCCQTHDHCYHNAKRFGKCNP-----YFKTYEYTCN-K Bungarus_fasciatus_P14615 NLFQFKNMIQCA--GTRSWTDYVSYGCYCGKGGSGTPVDQLDRCCKVHDDCYGDAEKIPKCKP-----YYKTYSYDCS-E Bungarus_fasciatus_P29601 NMVQFKSMVQCTS--TRPWLDYVDYGCNCDIGGTGTPLDELDRCCQTHANCYTEARKFPECAP-----YYKTYSYTCS-G Bungarus_multicinctus_P00606 NLYQFKNMIVCA--GTRPWIGYVNYGCYCGAGGSGTPVDELDRCCYVHDNCYGEAEKIPGCNP-----KTKTYSYTCT-K Bungarus_multicinctus_P00617 NLINFMEMIRYTIPCEKTWGEYADYGCYCGAGGSGRPIDALDRCCYVHDNCYGDAEKKHKCNP-----KTQSYSYKLT-K Bungarus_multicinctus_P00618 NLINFMEMIRYTIPCEKTWGEYADYGCYCGAGGSGRPIDALDRCCYVHDNCYGDAEKKHKCNP-----KTQSYSYKLT-K Bungarus_multicinctus_P00619 NLINFMEMIRYTIPCEKTWGEYTNYGCYCGAGGSGRPIDALDRCCYVHDNCYGDAANIRDCNP-----KTQSYSYKLT-K Bungarus_multicinctus_P17934 DLYQFKEMIRYTIPCEKTWGEYADYGCYCGAGGSGTPIDALDRCCYVHDNCYGDAANIRDCDP-----KTQSYSYKLT-K Enhydrina_schistosa_P00610 NLVQFSYVITCANHNRRSSLDYADYGCYCGAGGSGTPVDELDRCCKIHDDCYGEAEKQ-GCYP-----KMLMYDYYCGSN Hemachatus_haemachatus_P00595 NLYQFKNMIKCTVP-SRSWWHFANYGCYCGRGGSGTPVDDLDRCCQTHDNCYSDAEKISGCRP-----YFKTYSYDCT-K Laticauda_colubrina_P10116 NLIQFSELIQCANKGKRATYYYMDYGCYCGKGGSGTPVDDLDRCCKTHDDCYGQAEKK-GCFP-----FLTLYNFICFPG Laticauda_colubrina_129479 NLIQFSQLIQCANKGKRPTLHYMDYGCYCGPGGSGTPVDDLDRCCKTNDDCYGQAEKK-GCSP-----LSTNYNFDCFPG Laticauda_laticaudata_129512 NLAQFALVIKCADKGKRPRWHYMDYGCYCGPGGSGTPVDELDRCCKTHDQCYAQAEKK-GCYP-----KLTMYSYYCGGD Laticauda_semifasciata_P00611 NLVQFSNLIQCVNKGSRASYHYADYGCYCGAGGSGTPVDELDRCCKIHDDCYGEAEKM-GCYP-----KWTLYTYDCSTE Laticauda_semifasciata_P00612 NLVQFTYLIQCANSGKRASYHYADYGCYCGAGGSGTPVDELDRCCKIHDNCYGEAEKM-GCYP-----KLTMYNYYCGTQ Laticauda_semifasciata_P00613 NLVQFSYLIQCANTGKRASYHYADYGCYCGAGGSGTPVDELDRCCKIHDNCYGQAEKM-GCYP-----KLTMYNYYCGTQ Maticora_bivirgata_P24644 NLYQFGNMIQCTIPKRLSWSSFVDYGCYCGKGGSGTPV?????????????????????????????????????????? Naja_atra_P00598 NLYQFKNMIQCTVP-SRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWP-----YFKTYSYECS-Q Naja_kaouthia_P00596 NLYQFKNMIQCTVP-NRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISRCWP-----YFKTYSYECS-Q Naja_kaouthia_P00597 NLYQFKNMIQCTVP-SRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWP-----YFKTYSYECS-Q Naja_melanoleuca_P00599 NLYQFKNMIHCTVP-NRPWWHFANYGCYCGRGGKGTPVDDLDRCCQIHDKCYDEAEKISGCWP-----YIKTYTYESC-Q Naja_melanoleuca_P00600 NLYQFKNMIQCTVP-NRSWWHFANYGCYCGRGGSGTPVDDLDRCCQIHDNCYGEAEKISGCWP-----YIKTYTYESC-Q Naja_melanoleuca_P00601 NLYQFKNMIHCTVP-NRSWWHFANYGCYCGRGGSGTPVDDLDRCCQIHDNCYGEAEKISGCWP-----YIKTYTYDSC-Q Naja_mossambica_P00602 NLYQFKNMIHCTVP-SRPWWHFADYGCYCGRGGKGTAVDDLDRCCQVHDNCYGEAEKL-GCWP-----YLTLYKYECS-Q Naja_mossambica_P00603 NLYQFKNMIHCTVP-SRPWWHFADYGCYCGRGGKGTAVDDLDRCCQVHDNCYGEAEKL-GCWP-----YLTLYKYECS-Q Naja_mossambica_P00604 NLYQFKNMIHCTVP-SRPWWHFADYGCYCGRGGKGTPVDDLDRCCQVHDNCYEKAGKM-GCWP-----YFTLYKYKCS-Q Naja_naja_P15445 NLYQFKNMIKCTVP-SRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWP-----YFKTYSYECS-Q Naja_nigricollis_P00605 NLYQFKNMIHCTVP-SRPWWHFADYGCYCGRGGKGTPVDDLDRCCQVHDNCYEKAGKM-GCWP-----YLTLYKYKCS-Q Naja_oxiana_P25498 NLYQFKNMIKCTVP-SRSWLDFANYGCYCGRGGSGTPVDDLDRCCQIHDNCYNEAGKISGCWP-----YFKTYSYECS-Q Naja_pallida_P14556 NLYQFKNMIHCTVP-SRPWWHFADYGCYCGRGGKGTPIDDLDRCCQVHDNCYEKAGKM-GCWP-----YFTLYKYKCS-K Notechis_scutatus_P00607 NLVQFSNMIQCANHGSRPSLAYADYGCYCSAGGSGTPVDELDRCCKTHDDCYARATKSYSCTP-----YWTLYSWQCIEK Notechis_scutatus_P00608 NLVQFSYLIQCANHGKRPTWHYMDYGCYCGAGGSGTPVDELDRCCKIHDDCYDEAGKK-GCFP-----KMSAYDYYCGEN Notechis_scutatus_P00609 NLVQFSYLIQCANHGRRPTRHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKK-GCSP-----KMSAYDYYCGEN Notechis_scutatus_P08873 NLYQFGNMIQCANHGRRPTLAYADYGCYCGAGGSGTPVDELDRCCKAHDDCYGEAGKK-GCYP-----TLTLYSWQCIEK Notechis_scutatus_P20146 NVAQFDNMIECANYGSRPSWHYMEYGCYCGKEGSGTPVDELDRCCKAHDDCYTEAEKR-RCHP-----KFSAYSWKCGSD Oxyuranus_scutellatus_P00614 NLLQFGFMIRCANRRSRPVWHYMDYGCYCGKGGSGTPVDDLDRCCQVHDECYGEAVRRFGCAP-----YWTLYSWKCYGK Oxyuranus_scutellatus_P00615 NLVQFGKMIECAIRNRRPALDFMNYGCYCGKGGSGTPVDDLDRCCQVHDECYAEAEKH-GCYP-----SLTTYTWECRQV Pseudechis_australis_P04056 NLIQFGNMIQCANKGSRPSLDYADYGCYCGWGGSGTPVDELDRCCQVHDNCYEQAGKK-GCFP-----KLTLYSWKCTGN Pseudechis_australis_P04057 NILQFRKMIQCANKGSRAAWHYLDYGCYCGPGGRGTPVDELDRCCKIHDDCYIEAGKD-GCYP-----KLTWYSWDCTGD Pseudechis_australis_P20250 NLIQFGNMIQCANKGSRPTRHYMDYGCYCGWGGSGTPVDELDRCCQTHDDCYGEAEKK-GCYP-----KLTLYSWDCTGN Pseudechis_australis_P20251 NLIQFGNMIQCANKGSRPTRHYMDYGCYCGWGGSGTPVDELDRCCKVHDDCYGEAEKK-GCYP-----KLTLYSWDCTGN Pseudechis_australis_P20252 NLIQFSNMIQCANKGSRPSLDYADYGCYCGWGGSGTPVDELDRCCKVHDDCYAEAGKK-GCYP-----KLTLYSWDCTGN Pseudechis_australis_P20253 NLIQFKSIIECANRGSRRWLDYADYGCYCGWGGSGTPVDELDRCCKVHDECYGEAVKQ-GCFP-----KLTVYSWKCTEN Pseudechis_australis_P20254 NLIQFSNMIQCANKGSRPSLHYADYGCYCGWGGSGTPVDELDRCCKVHDDCYDQAGKK-GCFP-----KLTLYSWDCTGN Pseudechis_australis_P20255 NLIQFGNMIQCANKGSRPSLNYADYGCYCGWGGSGTPVDELDRCCQVHDNCYEQAGKK-GCFP-----KLTLYSWKCTGN Pseudechis_australis_P20256 NLIQFGNMIQCANKGSRPSLDYADYGCYCGWGGSGTPVDELDRCCQTHDNCYEQAGKK-GCFP-----KLTLYSWKCTGN Pseudechis_australis_P20257 NILQFRKMIQCANKGSRAAWHYLDYGCYCGPGGRGTPVDELDRCCKIHDDCYIEAGKD-GCYP-----KLTWYSWQCTGD Pseudechis_porphyriacus_P20258 NLYQFKNMIQCANKGSRSWLDYVNYGCYCGWGGSGTPVDELDRCCQTHDNCYDQAGKK-GCFP-----KLTLYSWKCTGN Pseudechis_porphyriacus_P20259 NLIQFSNMIKCAIPGSRPLFQYADYGCYCGPGGHGTPVDELDRCCKIHDDCYGEAGKK-GCFP-----KLTLYSWKCTEK Pseudonaja_textilis_P23026 NLVQFSYLIRCANKYKRPGWHYANYGCYCGSGGRGTPVDDVDRCCQAHDKCYEDAEKL-GCYP-----KWTTYNYYCGAN Pseudonaja_textilis_P23027 DLVEFGFMIRCANRNSQPAWQYMDYGCYCGKRGSGTPVDDVDRCCQTHNECYDEAAKIPGCKP-----KWTFYFYQCGSG Pseudonaja_textilis_P30811 NLIQFSNMIKCTIPGSQPLLDYANYGCYCGPGNNGTPVDDVDRCCQAHDECYDEASNH-GCYP-----ELTLYNYYCDTG Oxyuranus_scutellatus_P00616_outgroup DFEQFSNMIQCTIPCGSECLAYMDYGCYCGPGGSGTPIDDLDRCCKTHDECYAEAGKLSACKSVLSEPNNDTYSYECN-E Aipysurus_laevis_P08872 VP-TCN-SESGCQKSVCACDATAAKCFAEAPYNNKNYNINTS-NCQ Aspidelaps_scutatus_P07037 GKLTCSGNDDKCAAFVCNCDRVAAICFAGAPYIDDNYNVDLNERCQ Bungarus_fasciatus_P00627 PDITCTGAKGSCGRNVCDCDRAAAICFAAAPYNLANFGIDKEKHCQ Bungarus_fasciatus_P00628 PDLTCTDAKGSCARNVCDCDRAAAICFAAAPYNLANFGINKETHCQ Bungarus_fasciatus_P00629 PDITCTDAKGSCGRTVCDCDRAAAICFAAAPYNLANFGIDKEKHCQ Bungarus_fasciatus_P14411 PNLTCRGAKGSCGRNVCDCDRAAAICFAAAPYNLSNFGINKKTHCK Bungarus_fasciatus_P14615 GKLTCKADNDECAAFICNCDRVAAICFAGAPYNDNNFMIDSKTRCN Bungarus_fasciatus_P29601 GTITCNADNDECAASVCNCDRTAALCFAGAPYNQNNFDVDLETRCQ Bungarus_multicinctus_P00606 PNLTCTDAAGTCARIVCDCDRTAAICFAAAPYNINNFMISSSTHCQ Bungarus_multicinctus_P00617 RTIICYGAAGTCGRIVCDCDRTAALCFGNSEYIEGHKNIDTARFCQ Bungarus_multicinctus_P00618 RTIICYGAAGTCARIVCDCDRTAALCFGNSEYIERHKNIDTKRHCR Bungarus_multicinctus_P00619 RTIICYGAAGTCARVVCDCDRTAALCFGDSEYIEGHKNIDTARFCQ Bungarus_multicinctus_P17934 RTIICYGAAGTCARVVCDCDRTAALCFGNSEYIEGHKNIDTARFCQ Enhydrina_schistosa_P00610 GP-YCRNVKKKCNRKVCDCDVAAAECFARNAYNNANYNIDTKKRCK Hemachatus_haemachatus_P00595 GKLTCKEGNNECAAFVCKCDRLAAICFAGAHYNDNNNYIDLARHCQ Laticauda_colubrina_P10116 GP-TCD-RGTTCQRFVCDCDIQAAFCFARSPYNNKNYNINISKRCK Laticauda_colubrina_129479 GP-QCG-KGTTCQRFVCDCDLKAALCFAKSPYNNKNFNIDTKKRCK Laticauda_laticaudata_129512 GP-YCN-SKTECQRFVCDCDVRAADCFARYPYNNKNYNINTSKRCK Laticauda_semifasciata_P00611 EP-NCS-TKTGCQGFVCACDLEAAKCFARSPYNNKNYNIDTSKRCK Laticauda_semifasciata_P00612 SP-TCD-DKTGCQRYVCACDLEAAKCFARSPYNNKNYNIDTSKRCK Laticauda_semifasciata_P00613 SP-TCD-NKTGCQRYVCACDLEAAKCFARSPYNNKNYNIDTSKRCK Maticora_bivirgata_P24644 ?????????????????????????????????????????????? Naja_atra_P00598 GTLTCKGGNNACAAAVCDCDRLAAICFAGAPYNNNNYNIDLKARCQ Naja_kaouthia_P00596 GTLTCKGDNDACAAAVCDCDRLAAICFAGAPYNNNNYNIDLKARCQ Naja_kaouthia_P00597 GTLTCKGGNNACAAAVCDCDRLAAICFAGAPYNNNNYNIDLKARCQ Naja_melanoleuca_P00599 GTLT-CKDGGKCAASVCDCDRVAANCFARATYNDKNYNIDFNARCQ Naja_melanoleuca_P00600 GTLTSCGANNKCAASVCDCDRVAANCFARATYNDKNYNIDFNARCQ Naja_melanoleuca_P00601 GTLTSCGAANNCAASVCDCDRVAANCFARAPYIDKNYNIDFNARCQ Naja_mossambica_P00602 GKLTCSGGNNKCEAAVCNCDLVAANCFAGAPYIDANYNVNLKERCQ Naja_mossambica_P00603 GKLTCSGGNNKCAAAVCNCDLVAANCFAGARYIDANYNINLKERCQ Naja_mossambica_P00604 GKLTCSGGNSKCGAAVCNCDLVAANCFAGARYIDANYNINFKKRCQ Naja_naja_P15445 GTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ Naja_nigricollis_P00605 GKLTCSGGNSKCGAAVCNCDLVAANCFAGARYIDANYNINFKKRCQ Naja_oxiana_P25498 GTLTCKGDNNSCAASVCDCDRLAAICFAGAPYNNDNYNINLKARCQ Naja_pallida_P14556 GTLTCNGRNGKCAAAVCNCDLVAANCFAGAPYINANYNIDFKKRCQ Notechis_scutatus_P00607 TP-TCD-SKTGCQRFVCDCDATAAKCFAKAPYNKENYNIDPKKRCQ Notechis_scutatus_P00608 GP-YCRNIKKKCLRFVCDCDVEAAFCFAKAPYNNANWNIDTKKRCQ Notechis_scutatus_P00609 GP-YCRNIKKKCLRFVCDCDVEAAFCFAKAPYNNANWNIDTKKRCQ Notechis_scutatus_P08873 TP-TCN-SKTGCERSVCDCDATAAKCFAKAPYNKKNYNIDTEKRCQ Notechis_scutatus_P20146 GP-TCD-PETGCKRTVCDCDATAAKCFAKAPFNQANWNIDTETHCQ Oxyuranus_scutellatus_P00614 AP-TCN-TKTRCQRFVCRCDAKAAECFARSPYQNSNWNINTKARCR Oxyuranus_scutellatus_P00615 GP-YCN-SKTQCEVFVCACDFAAAKCFAQEDYNPAHSNINTGERCK Pseudechis_australis_P04056 VP-TCN-SKPGCKSFVCACDAAAAKCFAKAPYKKENYNIDTKKRCK Pseudechis_australis_P04057 AP-TCN-PKSKCKDFVCACDAAAAKCFAKAPYNKANWNIDTKTRCK Pseudechis_australis_P20250 VP-ICS-PKAECKDFVCACDAEAAKCFAKATYNDANWNIDTKTRC? Pseudechis_australis_P20251 VP-ICS-PKAECKDFVCACDAEAAKCFAKATYNDANWNIDTKTRCK Pseudechis_australis_P20252 VP-ICN-PKTECKDFTCACDAEAAKCFAKAPYKKENWNIDTKTRCK Pseudechis_australis_P20253 VP-ICD-SRSKCKDFVCACDAAAAKCFAKAPYNKDNYNIDTKTRCQ Pseudechis_australis_P20254 VP-ICN-PKSKCKDFVCACDAAAAKCFAKAPYNKANWNIDTKTRCK Pseudechis_australis_P20255 VP-TCN-SKTGCKSFVCACDAAAAKCFAKAPYKKENYNIDTKKRCK Pseudechis_australis_P20256 AP-TCN-SKPGCKRFVCACDAAAAKCFAKAPYKKENYNIDTKKRCK Pseudechis_australis_P20257 AP-TCN-PKSKCKDFVCACDAAAAKCFAKAAYNKANWNIDTKTRCK Pseudechis_porphyriacus_P20258 VP-TCN-SKSGCKDFVCACDAEAAKCFAKAPYKKENFKIDTKTRC? Pseudechis_porphyriacus_P20259 VP-TCN-AKSRCKDFVCACDAEAAKCFAKAPYIKENYNINTKTRC? Pseudonaja_textilis_P23026 GP-YCK-TRTKCQRFVCNCDVVAADCFASYPYNRRYWFYSNKKRCQ Pseudonaja_textilis_P23027 SQFTCRKSKDVCRNVVCDCDFKAALCLTGARYNSANYNIDIKTHCR Pseudonaja_textilis_P30811 VP-YCK-ARTQCQVFVCGCDLAVAKCLAGATYNDENKNINTGERCQ Oxyuranus_scutellatus_P00616_outgroup GQLTCNDDNDECKAFICNCDRTAVTCFAGAPYNDDLYNIG-MIECH ; END; begin mrbayes; set autoclose = yes nowarn = yes; mcmc nruns = 4 ngen = 5000000 nchains = 4 samplefreq = 500 printfreq = 500 savebrlens = yes filename = slowinski_PLA2.nex; sumt burnin = 2000 contype = allcompat showtreeprobs = yes filename = slowinski_PLA2.nex; END; Begin mrbayes; set autoclose = yes nowarn = yes; outgroup Oxyuranus_scutellatus_P00616_outgroup; set autoclose = yes; begin mrbayes; set autoclose = yes nowarn = yes; prset aamodelpr = fixed ( WAG ); lset rates = gamma; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 126; END; BEGIN TREES; Title 'Slowinski et al''s (1997) Elapid phospholipase A2 amino acid dataset tree'; LINK Taxa = Elapid; TRANSLATE 1 Aipysurus_laevis_P08872, 2 Aspidelaps_scutatus_P07037, 3 Bungarus_fasciatus_P00627, 4 Bungarus_fasciatus_P00628, 5 Bungarus_fasciatus_P00629, 6 Bungarus_fasciatus_P14411, 7 Bungarus_fasciatus_P14615, 8 Bungarus_fasciatus_P29601, 9 Bungarus_multicinctus_P00606, 10 Bungarus_multicinctus_P00617, 11 Bungarus_multicinctus_P00618, 12 Bungarus_multicinctus_P00619, 13 Bungarus_multicinctus_P17934, 14 Enhydrina_schistosa_P00610, 15 Hemachatus_haemachatus_P00595, 16 Laticauda_colubrina_P10116, 17 Laticauda_colubrina_129479, 18 Laticauda_laticaudata_129512, 19 Laticauda_semifasciata_P00611, 20 Laticauda_semifasciata_P00612, 21 Laticauda_semifasciata_P00613, 22 Maticora_bivirgata_P24644, 23 Naja_atra_P00598, 24 Naja_kaouthia_P00596, 25 Naja_kaouthia_P00597, 26 Naja_melanoleuca_P00599, 27 Naja_melanoleuca_P00600, 28 Naja_melanoleuca_P00601, 29 Naja_mossambica_P00602, 30 Naja_mossambica_P00603, 31 Naja_mossambica_P00604, 32 Naja_naja_P15445, 33 Naja_nigricollis_P00605, 34 Naja_oxiana_P25498, 35 Naja_pallida_P14556, 36 Notechis_scutatus_P00607, 37 Notechis_scutatus_P00608, 38 Notechis_scutatus_P00609, 39 Notechis_scutatus_P08873, 40 Notechis_scutatus_P20146, 41 Oxyuranus_scutellatus_P00614, 42 Oxyuranus_scutellatus_P00615, 43 Pseudechis_australis_P04056, 44 Pseudechis_australis_P04057, 45 Pseudechis_australis_P20250, 46 Pseudechis_australis_P20251, 47 Pseudechis_australis_P20252, 48 Pseudechis_australis_P20253, 49 Pseudechis_australis_P20254, 50 Pseudechis_australis_P20255, 51 Pseudechis_australis_P20256, 52 Pseudechis_australis_P20257, 53 Pseudechis_porphyriacus_P20258, 54 Pseudechis_porphyriacus_P20259, 55 Pseudonaja_textilis_P23026, 56 Pseudonaja_textilis_P23027, 57 Pseudonaja_textilis_P30811, 58 Oxyuranus_scutellatus_P00616_outgroup; TREE con_all_compat = (58:0.449685,((2:0.12161,(15:0.138407,(((23:0.007372,25:0.007233)0.53:0.011709,(24:0.029959,(32:0.013427,34:0.062442)0.89:0.021645)0.65:0.014628)0.97:0.052077,(((26:0.071768,27:0.013053)0.64:0.01851,28:0.038264)1.00:0.134179,((29:0.02523,30:0.014325)0.96:0.030635,((31:0.008499,33:0.014239)0.88:0.026792,35:0.076629)1.00:0.071483)1.00:0.117915)0.70:0.054281)0.71:0.053483)0.52:0.036312)0.80:0.086728,22:0.212364)0.68:0.066303,(((((((1:0.164353,(36:0.130166,39:0.064519)0.84:0.084145)0.34:0.044795,40:0.2927)0.13:0.067111,((((14:0.157054,(37:0.023686,38:0.049282)1.00:0.088615)1.00:0.089959,(18:0.168696,55:0.330489)0.93:0.054973)0.95:0.039748,((16:0.110883,17:0.129545)1.00:0.179183,(19:0.105236,(20:0.026734,21:0.018464)1.00:0.057499)1.00:0.096044)0.68:0.047815)1.00:0.122478,(41:0.18346,56:0.487725)0.95:0.138711)0.37:0.054516)0.36:0.111946,((((((((42:0.295546,57:0.288562)0.99:0.207326,54:0.089335)0.62:0.067098,48:0.13315)0.30:0.032614,(((43:0.007587,51:0.029801)0.59:0.013573,50:0.020437)1.00:0.048413,53:0.084881)1.00:0.05863)0.45:0.046415,47:0.052884)0.36:0.025589,49:0.024404)0.43:0.038727,(45:0.02284,46:0.007756)1.00:0.072007)0.26:0.039642,(44:0.008263,52:0.023462)1.00:0.155106)0.53:0.109534)1.00:0.362656,((((3:0.073948,5:0.017066)0.67:0.032815,4:0.027947)1.00:0.098266,6:0.063087)1.00:0.21856,(9:0.054273,(((10:0.013803,11:0.037026)1.00:0.054361,12:0.028048)1.00:0.042435,13:0.019668)1.00:0.524555)0.99:0.086814)0.95:0.135178)0.77:0.131825,7:0.118753)0.51:0.044651,8:0.30857)0.28:0.036834); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 126; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 126; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1968910381901741917; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6614990886882925546; checksumv 0 2 2010098604 null; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;