NEXUS
[File created by TreeBASE:  7/26/07  21:03:41]
[Matrix accession#: M1673]

BEGIN TAXA;
	TITLE M1673;
	DIMENSIONS  NTAX=13;
	TAXLABELS
		Coreopsis_senaria	Dahlia_coceinea	Coreopsis_cyclocarpa	Coreopsis_mutica	Coreopsis_gigantea	Coreopsis_calliopsidea	Coreopsis_stillmanii	Coreopsis_douglasii	Coreopsis_californica	Coreopsis_bigelovii	Coreopsis_petrophila	Coreopsis_maritima	Coreopsis_hamiltonii
	;
END;

BEGIN CHARACTERS;
	TITLE M1673;
	DIMENSIONS NCHAR=1043;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Coreopsis_senaria            --------------------------------------------------------------------------------------------------------------------------------CTAAGTTGTCAA------TCGAACTAAAAAA-G-AAAGGGTATGGATAAATGGAAGGATG-ATAGAAAGAAAGAAAAAGAATAAAGAATATTGAGGATATA-AATATAGAA-TTCCAATATGTATGTAAGGTCTATGAGTCATCTCAGAAAAAA-TCTGCGTAATAAAGCATCAATACGGATTCCTCANN-NNTCGGATCTGCTCATCGAACAAAAAATAAAGAGCTTCGAGCCAATAAAGACTAAGAATATTGACTCAAAAACTAATAGCTCCG-TTGTAGAATTAAGACCTAACCATTAAGTAAGAAGCGATGGGAACGATGGAACCTGTGAATTCAAAAGATTTTAGTGAAAAGGAATTCGAATGATTCATTGATCGGGATGGCGGAACCGGCCAGAGACCAATTCATCTATTCGGAAAAATTATGAACTAATGAGAGAACTGAAATAGAAATTGAAAGAGTAAATATTCGCCCGCGAAAACTTTATTTTCTTGGATTGCTAAAATTGGGTCAATCCAATACGATAAAGAGTAAAACAAAAGAAAGATTTTTTTTTTACATTATCAAATAGATAAATAT----------AAGAAAAAAATATC--AAATAGATAAATATAAG-----CAAAAAATAGTTATTTAATATATTTAGATTTGGTTATCTATACAAACAAGATATACAAA-----TTAAAAATAGATTTGATCTAGATTAAATGAAATCCATTATTCAGTATATTACTTATT----------AAATACATGTATATCTTAATTCAAATTATATTCTATCTGAATT----------------------GAATTCAAAATCTTGAATTTGAATTGATTT-ATTCGCGAGGAGCTGGATGAGAAGAAACTCT-CACGTCCGGTTCTGTAGTAGAGATGG
		Dahlia_coceinea              TAGAAGTAATAACCAACTCATCACTTCGTATTATCTGGATCC-AAA-GAACCAGTCAAGATATGATATATTGTTCATATTGTTGTAG-CAACTGAAA---TCTTTTTTTTTATTAAAAAAAA---TTTCTAAGTTGTCAA------TCGAAATAAAAAA-G-AAAGGGTATGGATAAACGGAAGGATG-AGAGAAAGAAAGAAAAA-------GAATATTGATGATATAGAATT--------CCAATA----TGTAAGGTCTATGGGTCATATCAGAAAAAA-TCTGCGTAATAAAGCATCAATACGGATTCATCATT-AAAAGGATCTGCTCATCGAACAAAAA-TAAAGAGCTTCGAGCCAATAAAGACTAAGAATATTGACTCAAGAACTAATAGCTCCG-TTGTAGAATTCAGACCTAACCATTAAGTAAGAAGCGATGGGAACGATGGAACCTGTGAATTCAAAAGATTTTAGTGAAAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
		Coreopsis_cyclocarpa         TAGAAGTAATAACCAACTCATCACTTCGTATTATCTGGATCC-AAA-GAACCAGTCAAGATATGATATATTGTTCATATTGTTGTAG-CAACTGAAA---TCTTTTTTT--ATGCAAAAAA----TTTCTAAGTTGTCAATCGAAATCGAAATAAAAAA-G-AAAGGGTATGGATAAACGGAAGGATG-AGAGAAAGAAAGAAAAAGAATAAATAATATTGATGATATATAATT--------CCAATA----TGTAAGGTCTATGAGTCATCTCAGAAAAAAATCTGCGTAATAAAGCATCAATACAGATTCATCATT-AAATGGATCTGCTCATCGAACAAAAAATAAAGAGCTTCGAGTCAATAAAGACTAAGAATATTGACTCAAAAACTAATAGCTCCG-TTGTAAAATTCAGACCTAACCATTAAGTAAGAAGCGATGGGAACGATGGAACCTGTG------------------------------------------------------------------------------------------------------TGATAGAACTGAAATAGAAATGGAAGGAGTAAATATTCGCCCGCGAAAACTTTATTTTCTTGGATTGCTAAAATTGGGTCAATCCAATACGATAAAGAGTAAAACAAAAGAAAGATTT-GTTTTAACATTCTAAAATAGATAAATAT---------------------ATCTAAAATAGATAAATATAAG------AAAAAATAGTTATTTAATATATTTAGATTTAGTTATCTATACAAACAAGATATACAAA-----TTCATAATATATTTGATCTAGATTAAATGAAATCCATGATTCAGTATATTACTTATT----------AAATACATGTATATCTTAATTCAAATTATATTTTATCTGAATT----------------------GAATTCAAAATCTTAAATTTGAATTGATTTTATTCGCGAGGAGCTGGATGAGAAGAAACTCT-CACGTCCGGTTCTGTAGTAGAGATGG
		Coreopsis_mutica             ---AAGTAATAACCAACTCATCACTTCGTATTATCTGGATCC-AAA-GAACCAGTCAAGATATGATATATTGTTCATATTGTTGTAG-CAACTGAAA---TCTTTTTTT--ATTCAAAAAA----TTTCTAAGTTGTCAATCGAAATCGAAATAAAAAA-GTAAAGGGTATGGATAAACGGAAGGATG-AGAGAAAGAAAGAAAAAGAATAAAGAATATGGATGATATATAATT--------CCAATA----TGTAAGGTCTATGAGTCATCTCAGNAAAAAATCTNCGTAATAAAGCATCAATACGGACTCATCATTTAAATGGATCTGCTCATCGAACAAAAAATAAAGAGCTTCGAGTCAATAAAGACTAAGAATATTGACTCAAAAACTAATAGCTCCG-TTGTATAATTCAGACCTAACCATTAAGTAAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTAGTGAAAATGAATTCGAATGATTCATTGATCGGGATGGCGGAACCGGCCAGAGACCAATTCATCTATTCGGAAAAATTATGAACTAATGATAGAACTGAAATAGAAATGGAAGGAGTAAATATTCGCCCGCGAAAACTTTATTTTCTTGGATTGCTAAAATTGGGTCAATCCAATACGATAAAGAGTAAAACAAAAGAAAGATTT-GTTTTAACATTCTAAAATAGATAAATAT----------------------------------------AAG------AAAAAATAGTTATTTAATATATTTAGATTTAGTTATCTATACAAACAAGATATACAAA-----TTAATAATATATTTGATCTAGATTAAATGAAATCCATGATTCAGTATATTACTTATT----------AAATAAATGTATATCTTAATTCAAATTATATTCTATCTGAATT----------------------GAATTCAAAATCTTGAATTTGAATTGATTTTATTCGCGAGGAGCTGGATGAGAAGAAACTCT-CACGTCCGGTTCTGTAGTAGAGATGG
		Coreopsis_gigantea           TAGAAGTAATAACCAACTCATCACTTCGTATTATCTGGATCC-AAA-GAACCAGTCAAGATATGATATATTGTTCATATTGTTGTAG-CAACTGAAAAAA--TTTTTT---ATTTAAAAAA----TTTCTAAGTTGTCAA------TCG-AATAAAAAA-G-AAAGGGTATGGATAAATGGAAGGATG-AGAGAAAGAAAGAAAAAGAATAAAGAATATTGATGATATAGAATT--------CCAATA----TGTAAGGTCTATCAGTCATCTCAGAAAAAA-TCTGCGTAATAAAGCATCAATACGGATTCATCATT-AAATGGATCTGCTCATCGAACAAAAAATAAAGAGCTTCGAGCCAATAAAGACTAAGAATATTGACTCAAAAACTAATAGCTCCG-TTGTAAAATTCAGACCTAACCATTAAGTAAGAAGCGATGGGAACGATGGAACCTGTGAATTCAAAAGATTTTAGTGAAAATGAATTCGAATGATTCATTGATCGGGATGGCGGAACCGGCCAGAGACCAATTCATCTATTCGGAAAAATTATGAACTAATGATAGAACTGAAATAGAAATTGAAAGAGTAAATATTCGCCCGCGAAAACTTTATTTTCTTGGATTGCTAAAATTGGGTCAATCCAATACGATAAAGAGTAAAACAAAAGAAAGATTT-GTTTTAACATTCTAAAATAGATAAATAT----------------------------------------AAG-----AAAAAAATCGTTATTTAATATATTTAGATTTAGTTGTCTATACAAACAAGATATACAAA-----TTAATAATATATTTGATCTAGATTAAATGAAATCCATGATTCAGT-----ACTATTT----------AAATACATGTATATCTTAATTCAAATTATATTCTATCTGAATT----------------------GAATTCAAAATCTTGAATTTGAATTGATTTTATTCGCGAGGAGCTGGATGAGAAGAAACTCTCCACGTCCGGTTCTGTAGTAGAGATGG
		Coreopsis_calliopsidea       -----------ACCAACTCATCACTTCGTATTATCTGGATCC-AAATGAACCAGTCAAGATATGATATATTGTTCATATTGTTGTAG-CAACTGAAA---TCTTTTTTT--ATTTAAAAAT----TTTCTAAGTTGTCAA------TCGAAATAAAAAA-G-AAAGGGTATGGATAAATGGAAGGATGTAGAGAAAGAAAGAAAAAGAATAAAGAATATTGATGATATAGAATT--------CCAATA----TGTAAGGTCTATCAGTCATCTCAGAAAAAA-TCTGCGTAATAAAGCATCAATATGGATTCATCATT-AAATGGAGCGGCTCATCGAACAAAAAATAAAGAGCTTCGAGCCAATAAAGACTAAGAATATTGACTCAAAAACTAATAGCTCCG-TTGTAGAATTCAGACCTAACCATTAAGTAAGAAGCGATGGGAACGATGGAACCTGTGAATTCAAAAGATTTTAGTGAAAATGAATTCGAATGATTCATTGATCGGGATGGCGGAACCGGCCAGAGACCAATTCATCTATTCGGAAAAATTATGAACTAATGATAGAACTGAAATAGAAATTGAAAGAGTAAATATTCGCCCGCGAAAACTTTATTTTCTTGTATTGCTAAAATTGGGTCAATCCAATACGATAAAGAGTAAAACAAAAGAAAGATTT-GTTTTAACATTCTAAAATAGATAAATAT----------------------------------------AAG-----AAAAAAATAGTTATTTAATATATTTAGATTTAGTTGTCTATACAAACAAGATATACAAA-----TTAATAATATATTTGATCTAGATTAAATGAAATCCATGATTCAGTATATTACTTAGT----------AAATACATGTATATCTTAATTCAAATTATATTCTATCTGAATT----------------------GAATTCAAAATCTTGAATTTTAATTGATTTGATTCGCGAGGAGCCGGATGAGAAGA---------------------------------
		Coreopsis_stillmanii         TAGAAGTAATAACCAAGTCATCACTTCGTATTATCTGGATCCTAAA-GAACCAGTCAAGATATGATATATTGTTCATATTGTTGTAGTCAACTGAAA---TCTTTTTTT--ATGAAAAACT-CTGCTTCTAAGTAGTCAA------TCGAAATAATAAAAG-AAAGGGTGTGGATAAATGGAAGGATG-AGAGAAAGAAAGAAAAAGAATAAAAAATATTGATGATATAGAATA--------CCAATA----TGTAAGGTCTATGAGTCATCTCATAAAAAA-TCTCCGAAATAAAGCATCAATACAGATTCATCATT-AAATGGATCTGCTCATCGAACAAAAAATAAAGAGCTTCGAGCCAATAAAGACTAAGAATATTGACTCAAGAACTAATAGCTCCG-TTTTAGAATTCAGACCTAACCATTAAGTAAGAAGCGATGGGAACGATGGAACCTGTGAATTCAAAAGATTTTAGTGAAAATGAATTCGAATGATTCATTGATCGGGATGGCGGAACCGGCCAGAGACCAATTCATCTATTCGGAAAAGTTATGAACTAATGATAGAACTGAAATAGAAATTGAAAGAGTAAATATTCGCCCGCGAAAACTTTATTTTCTTGGATTGCTAAAATTGGGTCAATCCAATACGATAAAGAGTAAAACAAAAGAGAGATTT-GTTTGAACATTCTAAAATAGATAAATAT----------------------------------------AAT---AT-AAAAAATAGTTTTTTAATATATTTAGATTTAGTTATCTATACAAACAAGATATACAAA-----TTAATAATAGATTTGATCTAGATTAAATGAAATCCCCGATGCAGTATATTACTTATT----------AAATACAGGTATATCTTAATTCAAATTATATTCTATCTGAATT-----------------------------------------------GATTTTATTCGCGAGGAGCTGGATGAGAAGAAACTCT-CACGTCCGGTTCTGTAGTAGAGATGG
		Coreopsis_douglasii          ---AAGTAATAACCAACTCATCACTTCGTATTATCTGGATCC-AAA-GAACCAGTCAAGATATGATATATGGTTCATATTGTTGTAG-CAACTGAAA-----TTTTTT---AAATAAA----CATTTTCAAAGTTGTCAA------TCGAAATAAAAAA-G-AAAGGGCATGGATAAATGGAAAGATG-AGAGAAAGAAAGAAAAAGAATAAAGAATATTGATGATATAGAATT--------CCAATA----TGTAAGGTCTATCAGTCATCTCAGAAAAAA-TCTGCGTAATAAAGCATCAATACGGATTCATCATT-AAATGGATCTGCTCATCGAACAAAAAATAAAGAGCTTCGAGCCAATAAAGACTAAGAATATTGACTCAAAAACTAATAGCTCCG-TTGTAGAATTCAGACCTAACCATTAAGTAAGAAGCGATGGGAACGATGGAACCTGTGAATTCAAAAGATTTTAGTGAAAATGAATTCGAATGATTCATTGATCGGGATGGCGGAACCGGCCAGAGACCAATTCATCTATTCGGAAAAATTATGAACTAATGATAGAACTGAAATAGAAATTGAAAGAGTAAATATTCGCCCGCGAAAACTTTATTTTCTTGTATTGCTAAAATTGGGTCAATCCAATACGATAAAGAGTAAAACAAAAGAAAGATAAAGTTTTAACATTCTAAAATAGATAAATAT--AAT-----------------------------------AAT--AATAATAAAATTGTTATTTAATATTTTTCTATTTAGTTGTCTATACAAA-AAGATATAAAATAAAAATTAATAATATATTTGATCTAGATTAAATGAAATCCGCGATTCAGTATATTACTTATT----------AAATACATGTATATCTTAATTCAAATTATATTCTATCTGAATT----------------------GAATTCAAAATCTTGAATTTGAATTGATTTTATTCGCGAGGAGCTGGATGAGAAGAAACTCT-CACGTCCGGTTCTGTAGTAGAGATGG
		Coreopsis_californica        TAGAAGTAATAACCAACTCATCACTTCGTATTATCTGGATCC-AAA-GAACCAGTCAAGATATGATATATGGTTCATATTGTTGTAG-CAACTGAAA-----TTTATT---ATTTAAAAAA----TTGCAAAGTTGTCAA------TCGAAATAAAAAA-G-AAAGGGTATGGATAAATGGAAGGATG-AGAGAAAGAAAGAAAAAGAATAAAGAATATTGATGATATAGAATT--------CCAATA----TGTAAGGTCTATCAGTCATCTCAGAAAAAAATCTGCGTAATAAAGCATCAATACGGATTCATCATT-AAATGGATCTGCTCATCGAACAAAAAATAAAGAGCTTCGAGCCAATAAAGACTAAGAATATGGACTCAAAAACTAATAGCTCCG-TTGTAGAATTCAGACCTAACCATTAAGTAAGAAGCGATGGGAACGATGGAACCTGTGAATTCAAAAGATTTTAGTGAAAATGAATTCGAATGATTCATTGATCGGGATGGCGGAACCGGCCAGAGACCAATTCATCTATTCGGAAAAATTATGAACTAATGATAGAACTGAAATAGAAATTGAAAGAGTAAATATTCGCCCGCGAAAACTTTATTTTCTTGGATTGCGAAAATTGGGTCAATCCAATAGGATAAAGAGTAAAACAAAAGAAAGATTT-GTTTTAACATTCTAAAATAGATAAATCTAAAATAGAGA------------------------------AATAAAATAAAAAAATCGTTATTGAATATATTTAGATTTAGTTGTCTATACAAA-AAGATATAAAAA-----AGAATAATATATTTGGTCTAGATTAAATGAAATCCGTGATTCAGTATATTACTTATT----------AAATACATGTATATCTTAATTCAAATTATATTCTATCTGAATTCAAATTATATTCTATCTGAATTGAATTCAAAATCTTGAATTTGAATTGATTTTATTCGCGAGGAGCTGGATGAGAAGAAACTCT-CACGTCCGGTTCTGTAGTAGA-----
		Coreopsis_bigelovii          TAGAAGTAATAACCAACTCATCACTTCGTATTATCTGGATCC-AAA-GAACCAGTCAAGATATGATATATTGTTCATATTGTTGTAG-CAACTGAAAAA---TTTTTT---ATTTAAAAAA----TTTATAAGTTGTCAA------TCGAAATAAAAAAAG-AAAGGGTATGGATAAATGGAAGGATG-AGAGAAAGAAAGAAAAAAAATAAAGAATATTGATGATATAGAATT--------CCAATA----TGTAAGGTCTATCAGTCATCTCAGAAAAAAATCTGCGTAATAAAGCATCAATACGGATTCATCATT-AAATGGATCTGCTCATCGAACAAAAAAGAAAGAGCTACGAGCCAATAAAGACTAAGAATATTGACTCAAAAACTAATAGCTCCGATTGTAGAATCCAGACCTAACCATTAAGTAAGAAGCGATGGGAACGATGGAACCTGTGAATTCAAAAGATTTTAGTGAAAATGAATTCGAATGATTCATTGATCGGGATGGCGGAACCGGCCAGAGACCAATTCATCTATTCGGAAAAATTATGAACTAATGATAGAACTGAAATAGAAATTGAAAGAGTAAATATTCGCCCGCGAAAACTTTATTTTCTTGGATTGCTAAAATTGGGTCAATCCAATACGATAAAGAGTAAAACAAAAGAAAGATTT-GTTTTAACATTCTAAACTAGATAAATAT----------------------------------------AAG------AAAAAATCGTTATTGAATATATTTAGATTTAGTAGTCTATACAAACAAGATATAAAAA-----TTAATAATATATTTGATCTAGATTAAATGAAATCCATGATTCAGTATATTACTTATT----------AAATACATGTATATCTTAATTCAAATTATATTCTATCTGAATT----------------------GAATTCAAAATCTTGAATTTGAATTGATTTTATTCGCGAGGAGCTGGATGAGAAGAAACTCT-CACGTCCGGTTCTGTAGTAGAGATGG
		Coreopsis_petrophila         TAGAAGTAATAACCAACTCATCACTTCGTATTATCTGGATCC-AAA-GAACCAGTCAAGATATGATATATTGTTCATATTGTTGTAG-CAACTGAAA---TCTTTT-------------------------AGTTGTCAA------TCGAACTAAAAAA-G-AAAGGGTATGGATAAATGGAAGGATG-ATAGAAAGAAAGAAAAAGAATAAAGAATATTGATGATATAGAATATAGAAATTCCAATA----TGTAAGGTCTATGAGTCATCTCATAAAAAA-TCTGCGTAATAAAGCATTAATACGGATTCCTCATT-AAATGGATCTGCTCATCGAACAAAAAATAAAGAGCTTCGAGCCAATAAAGACTAAGAATATTGACTCAAAAACTAATAGCTCCG-TTGTAGAATTAAGACCTAACCATTAAGTAAGAAGCGATGGGAACGATGGAACCTGTGAATTCAAAAGATTTTAGTGAAAAGGAATTTGAATGATTCATTGATCGGGATGGCGGAACCGGCCAGAGACCAATTCATCTATTCGGAAAAATTATGAACTAATGAGAGAACTGAAATAGAAATTGAAAGAGTAAATATTCGCCCGCGAAAACTTTCTTTTCTTGGATTGCTAAAATTGGGTCAATCCAATACGATAAAGAGTAAAACAAAAGAAAGGTTT--TTTTAACATTCTAAAATAGATAAATAT----------------------------------------AAG----AAAAAAAATAGTTATTTAATATATTTAGATTTGGTTATCTATACAAACAAGATATACAAA-----TTAATAATATATTTGATCTAGATTAAATGAAATCCATGATTCAGTATATTACTTATTATATTATATTAAATACATGTATATCTTAATTCAAATTATATTCTATCTGAATT----------------------GAATTCAAAATCTTGAATTTGAATTGATTT-ATTCGCGAGGAGCTGGATGAGAAGAAACTCT-CACGTCCGGTTCTGTAGTAGAGATGG
		Coreopsis_maritima           -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGAATTCGAATGATTCATTGATCGGGATGGCGGAACCGGCCAGAGACCAATTCATCTATTCGGAAAAATTATGAACTAATGATAGAACTGAAATAGAAATTGAAAGAGTAAATATTCGCCCGCGAAAACTTTATTTTCTTGGATTGCTAAAATTGGGTCAATCCAATACGATAAAGAGTAAAACAAAAGAAAGATTT-GTTTTAACATTCTAAAATAGATAAATAT----------------------------------------AAG------AAAAAATCGTTATTTAATATATTTAGATTTAGTTGTCTATACAAACAAGATATACAAA-----TTAATAATATATTTGATCTAGATTAAATGAAATCCATGATTCAGTATATTACTTATT----------AAATACATGTATATCTTAATTCAAATTATATTCTATCTGAATT----------------------GAATTCAAA-TCTTGNATTT---------------------------------------------------------------------
		Coreopsis_hamiltonii         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAATTCGAATGATTCATTGATCGGGATGGCGGAACCGGCCAGAGACCAATTCATCTATTCGGAAAAATTATGAACTAATGATAGAACTGAAATAGAAATTGAAAGAGTAAATATTCGCCCGCGAAAACTTTATTTTCTTGGATTGCTAAAATTGGGTCAATCCAATACGATAAAGAGTAAAACAAAAGAAAGATTT-GTTTTAACATTCTAAACTAGATAAATAT----------------------------------------AAG------AAAAAATCGTTATTGAATATATTTAGATTTAGTAGTCTATACAAACAAGATATAAAAA-----TTAATAATATATTTGATCTAGATTAAATGAAATCCATGATTCAGTATATTACTTATT----------AAATACATGTATATCTTAATTCAAATTATATTCTATCTGAATT----------------------GAATTCAAAATCTTGAATTTGAATTGATTTTATTCGCGAGGAGCTGGATGAGAAGAAACTCT-CACGTCCGGTTCTGTAGTAGAGANGG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 1043 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;