#NEXUS [written Fri Oct 22 13:49:31 EDT 2010 by Mesquite version 2.72 (build 528) at wipa-40-46.wism.nomadic.ufl.edu/10.128.40.46] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=10; TAXLABELS Coua_cristata Crotophaga_sulcirostris Cuculus_canorus Coccyzus_americanus Phaenicophaeus_curvirostris Geococcyx_californianus Grus_canadensis Rallus_limicola Tauraco_erythrolophus Choriotis_kori ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "GH1_Hanetal2010.nex"'; DIMENSIONS NCHAR=3634; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Coua_cristata CTGGCTGCTGAGAACTACAAAGAGTTCGTAAGTGTTGTGGCCTCCAGGCTTCTCTTCTGCATTAGCTTGACAGGTT--CA--------GGACT-GT-------GCCACAGCCTCCTACCTGGTGT----AGGTTTCTAGGAATG-AGACCTTTCAACTGTCAGGGTCTTCTCTATCCATTCTGGATGAGG-TGAAACSGTCTTAATAGGAC-AGGATGGGTTATGACCCATCATCCTGGACCCTGTCTCCTCCTCACAGTTCTCTGCCTCC--------ACCCCTGATCCTCCACAGATCCCTCCTCRGAGGAGTC-CAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAACCTGGGGTCTGRRATCTTCTTGTTCTCACTGGATTCCTTTGCTTTCAGGCAGGTTGTTATCTTGTCTAGGTACAGCTGGTGTTGATGATCTGATTCCTTGAAGCCTCTGCTTTTT-----------------------CCACGTGGTGCCTGAACAGTTTGTATGCACGGGGAAAATTCTTAGCTGGAAATTCCCAGSCTGAAGTCTGGTGTTTCAAAGCCAGTTTGGCTACTCCAGCTAGGACAACTAAGCAAAYAGCATAAT-AATCACACAATAGTATAGCTCTAAATTATTTATTTCACATAAAATATTA-TTTATTTAGGCTAAACAAGCTGCTAAAGAGGAGAATTCCCCAGTCATGCAGTCCAGCTGCTGTTCAGAGAGGATTCAGATGGGGCTTACCAGCAATTTGTCATCTGTAAAAGATCTTATTGCTTTGAGGAGCACCCTTGGGAGGCGTCCCAGCACAAAGGGAGCTCATCACCACACAGCCACAGTGCCCAGCAGGGAGTGCTCAAAGCAGGCTCCATTAGACTGTCAGATTTATGGCATAAAAGGGGTTCACTCACAGTCAAAATGCATAAAATAGAGCTATGCACRAGGCTCTTTATCAGTGGTTGCTGTGTCACTYTGCTTCTTGTGGGTTTCTCAGA---GTTCCTGGCCTGGC-TATAGGCAGGTTTTTACCTCCTCTGGAGCCTGAACCAMACTGCTGCTGGCTGGGCTAAAGGATGGGTGRAACACATCCATCACAAGTGTCTG-TGGTCTTC----AGTGCACAGGCAACAGATCT------GAGTGTATTTGGGATGTCTCCACAGGAACGCACCTATATTCCAGAGGACCAGAGACATGCCAACAAAAATCCTCAGGCA---TTCTGTTACTCAGAAACCATCCCTGCTCCCACAGGGAAGGACGATGCCCAGCAGAAATCGGTAAGTTCTTTCCCCTT-GGCCAAGCATGGACTTGTTTGAAGAGCTCAGCTGTGCTTCATCACAATCACAGAGGGTTTCAATCTACGAGCACTTCAGTGCTTCCCAAGGTGTCATTCCTCCTTTCCCTTTCATGCTATTTAAACCCTGCATGAAGAAAGACAGATTCT---------GACTGTGAATCATCTTCCCACCCCAAAAAGGAGACAAACCACTGT----GCTGGACATGT--C----TGGGTGGTGCTCCTCAGCTTCCAAACCTGTCTGCATCTGCTGAGGCTGCAGGTGCAGTGGCACATCCCTGGGTCACCTCCAGCCTGTTTCAGGGGGTAGCAGGACACTCGGGTAACTCTACCCAACACCTCACCTGCACAGCTTTGACCCTTTCCTTTTTTT-------------TTTAATTCTAGGATATGGAGCTGCTTCGGTTTTCCCTGGTTCTCATCCAGTCCTGGTTGACTCCAGTACAATACCTAAGCAAGGTGTTTACAAACAACGTGGTTTTCAGCACCTCTGACAG Crotophaga_sulcirostris CAGGCTGCCGAAACCTACAAAGATTTTGTAAGTGTTGTGGCCTCCGAGCATCTCCTCTGCATTAGCTTGACAGGTC--CA--------GGGCT-TT-------GCCACAGCCTCCCACCCAGTGT----AACTTCCTAAAAACAGAGACTTTTCAACTATTAATGTCTTCTATGTCAGTTCTGGATGAAG-TGAAAGGATCTTAATTGGAC-AGGACAGGTTATGTCCCATCAGCCTAAACGCTGTCTCTTCTTCACAGCTCTGTGCT--------------------------------------------------------------AAACCCCTAAATAGCACAGAGCCRAGMTGTCTCAAAGAGAATCCTG------AAAGTAGAGGGAGATGGCACAGATATTTTTGCAAGACTTTCTTGTGATGGTCACCTATGGCCTTGGCTGGTTCCAAGTGCTTAGAACTATCTACTGTGTCCA-GAGAAGGGCAACAAAGCTGAGGAAGGATCTGGAGAACAGGGGTTATGAAGAACAGCTCAGGAATCTGGGGCTGCTTAGTCTGGAGAAGAGGAGGCTGRGGGGAGACCTCATCACTCTCTGCAGCTCCCAGAAAGGAGGTTGCAGCAAGGTGGGTGCTG-TCTCTTCTCCCAAATGACAGGTGATAGGACAAGAGGAAATGGC----------ACCAGGACAGGTTCAGATGGGACATCAGGAAAAATTTCTTCACTGAAAGGGTTCTGAGGCACTGGCAGAGGCTGCCCAGGGAGGTGATGGAGTCACCATCCCTGGAAGCGTTTAAAAGACGG-TAGACAAGGTGCTCAGGGATA---CAGGGGTGGACAGGTACAGTCGGATTTGACCATCTCAAAGGTCTTTTCCAACCAAACAATTCAAGAATTCTATTCTATGATTGTATGATCCAGTTTCTGCTGTTGCCAGGAGCTGGAATGAGCTGTCGCTTTGG-AAAAAC------TGTCCTTGGGGGGGTCATCTAATCCTTGGGAGAATCCAATCCAAGTGCGTTTTGAATTCACCCTAGCACCTTGGGTTAGTG----AGGGGAAGACATTTAGGTCAGGAAGATGTTGGACCAGCTTGGAAACTCC-TG-TTYYCCCCTGCTAACCCTGTACAGAGCC---TCATAAAACCATAGAATCATGGAATGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAGAGCAATGCATGAGGTTCTTTATTAGCGTTCGCTGCATTGCTCTGCTTCGTGTGGGTTTCCTAGAGGAGATCCAGGCCTGCT-GCTG-------------------------CTGAACCAAACTGCTGCTGGTTTGGTTAAAGGATGGGTGGAACGCATCCATCACATGTGTTTG-TGGTCTTCTCCCAGTACATGGGCAACAGATCT------GAGTGTACGTGGGATGTCTCCACAGGAACGCATCTACATTCCAGAGGACCAGAGACACGCCAACAAAAATCCTCAGGCA---TTCTGTTACTCAGAAACCATCCCTGCTCCCACAGGGAAGGATGATGCCCAGCAGAAATCGGTAAGTTCTGTCCTCTG-GGCCAAGCACGGACCTGTTTGAAGAGCCCAGCTGTGCTTCATTACAGACACAAATTCTTTCCATCTGCGAGTACTTCCATTCTTTCCAAG-TATCGTTCTTCCTCTCCCTTTCTTACTTTTTAAACCTTACACAAGGGAAGACAGACCCTTCTGGGTTAGGCTGTGAATCATGTTCCCACCCCAAAGAGGAGTC-----------TGCACAGGACATATGCC----TGGGTGGTGCTCCTCAGCTTCCAAACTTG---------------GCTGCAGGAGCAGTGGCACATCCCTGGGTCACCTCCAGGCTGTATTGGAGGG-AGAGGGACACACTGGTAACTCTACCGAACACCTCACCTGAATGACTTCGATTCTTTMTTTTTTT--------------TTTAATTTCAGGATATGGAGCTGCTTCGGTTTTCCCTGGTTCTCATCCAGTCCTGGTTGACCCCGATACAATACCTAAGCAAGGTGTTCACAAACAACCTGGTTTTCAGCACCTCAGACAG Cuculus_canorus CTGGCTGCTGAGACTTACAAAGAGTTCGTAAGTGGTGTGGCCTTCTGGCATCTCTTCTGCATTAACTTGACACATT--TA--------GGACC-TT-------CACACAGCTTCCAACCTGGTGT----AACTTCCTAGAAACATAGACTTTTCAGCTATTAGTATCTTCTCTGTCAGCTCTTGATGAGG-TGAAAGAGTCTCAATAGGACCAGGACAGGCTATGTCCCATCAGCCAGAACTCTGTCTCCTCCTCACAGCTCTCTGCCTCT--------ATCTCTGATCTTCCACAATCCCTTCCTCAGGGCCATTGCTGCT-CACATGCAAACC--TAC-Y-GCACAGGGCCA-GCTGTCTCAAAGAGAATCCTGGCTCTGAAAGCAGAGGGAGATGGCACAGGTATT-TCAGAAGGTTCTCCTGTGATGGTCACCTACAGCCCTGGCTGATTCCAAGTTCTTTGAACTGTCTCATGTGTCCA-GAGAAAGGCAACAAAGCTGGGAAAGGGGCTGGAGCACAGGGATCATGG-GAGTGGCTGAAGGTACTGGAGTTGTTTAGACTGGAGAAGAGGAGGCTGAGGGGAGACCTCATCACTATCTACA----CCTGAAAGGCGGTTGTAGCGAGGTAGGGGGTGGTCTCATCTCCCAAGTAACAAGTGATAGGATGAGGGGAAATGGCCTCAAGTTGCACCCGGGCAGGTTCAGATTGGATATCAGGAAACATTTCTTCACCAAAAAGGTTCTCAGGCCCTG-CAGACGCTGCCAGGGGCAGTGGTGAAGTCACCATCCTTGAAGGTATTTAAAAGATGGGTAGATAAGGTTCTCAGGGGTAGTTTAGTAGTGTACAGGTACAACTGAACTTGATGATCCTGGAAGTCTTTTCCCTCCAAACGATTCTCTTATTCTATGCTATGATTCTATGATCCAGTTTCTGCTGTTGCCAGGAGCTGGAACAAGCTGTTGCTTTGGTAAGAGC------TCTCCTT-CGGGG-TCATCTACTCCTTGGGAGAACCCAGTTCAAGTGCATTTTGTGTTCGCTTTAGCACCTTGCCTTAGCGAAGGCAAGGAAGACCTGTAGGTCCAGAAACTACTGCACCAGCATGGAAACTCC-TG-TTCCTCGCTGCCAATCCTGTACAGAGCCACCTCACAGAATCATAAAATCACAGAACAGTTTGCATTGGAAAGGACCTCAAAGCCCATCCAATTCCAACTCCCTACCATGGGCAGGGACACCTCCCACTGGATCCGGTTGCTCCAAGCCCCATCCAATCTGGCCTTGAACCCCTCCAGGGATGGGGCAGCCACCACTGCTCTGGACAACCTGGGCCAGGGCCTCCCCACCCTCACAGGAAAACATTTCTCCTTAAGATCTCATCTCAATCTCCCCTCTTTCAGCTGAAAACCATTCCTCCTCATCCTGTCCCTGCACTCCATGATCAAGAGCCCCTCCTCAGCTTTCCT---------------------------------------------------------------------------------------------AGAGCTTTCCCTTTTCATACTTGGACGTATGCATGTCACACATTTATTTCTTGCAAAGAGTAACTATTTAGAACAGCTTA-GGAAAATTCTGTCACAACTGAGTTTTTAGATAAAACTTGTATTTAAATAAAAGTCCGACTTAATAGGATTCGATGCTAAAGTCATG-CTATTACTTACTGCACAGAGGAAAGATAGAAAAAAAGGAAAGAAAGAGGGAAAATCAGGTTATATGTGCTTATAGGTAAAAGATTCTACGTGCACACACAGCTCCTTGTATCACTTAGCTCAGATTTCAAAGTTTCCTAGTGCTTATCCTCAATTTATCAGCATTCCCGCCTGGGTGTCTGGCATAAGTTCACTCCAGAGTTCAAATCTGAGGATTCACTAAGCAAACTCTTAGGTAGCAGATTTTAGAAGGTAAATAATTTAATAGAGACATACAGCAACATGGACAGCTCTGGGGAGAGAGACCAACTCTGTGGAGATGCGCCAAC-ATGAACCAAGAAATCCCTGGGCAATGCCACCCTTACAGACTCTTTACCCACCCCTCATAAAATGAATCTGTTCAAAAGTAATTTGGGGTCTGGGGTCTTCTCTTCCTCACTGGATTCCTTAGCTTTCAGAGAGGTCGTTATCTTG--------------ATGTTGATGA------TCCTTGAA-CCTCTGTATTTTCCTGTTTTTCTTTGACT-GGGAGCCATGTGTTGACTGAACAGCTTGTATGCGCTGGGAAAGTTCTTAAGTGGAAATTCCCAGCTTGTAGCCTGGTGCTTCAGAGCCACTCTGGCTACTCCTGCTAGGACAGCTAAGCAAACAGCATACTAAATCACACAGTAGTATAACTCTAAATGATTTATTCTACATAAAATATTATTTTATTTCAGCTAAACAAGCTGTTAAAGAGGAGAATTCCCTGGTCATGCAGTCCAGTTGCCACCCAGGGAGGATTCAGATGGGGATCACCAGTGATTTCTTGTCAGTAAAAGATCTCATTGCTTTGAGGAGCACCCTTGA--GGCGTCCCAGCACAAGGGGAGATCATCATGACACAGTCATGGTGCCCAGCAGGAAGAACTCAAAGCAGGCTCCATTAGGTTGTCATATTTATGGGATAAAAAGGATTGAGTCACAGCCAAA----ATAAAATGG-------------GCTCTTTATCGGTGTTCACTCTATCACTCTGCTCCTTGTGGGTTTCTCAGAGAAGTCCTTGGCCCAGC-TGTGGGCAGGCCTTTACATCCCCTGAAGCCTGAACAAAACCAGCAGCAGTTTGGTTAAAGGATGGGTGGAATGCATGCATCAGAAGCGCCTG-TGGTCTTCTCCCAGCACATGGGCAACAGATGT------GAGTACATTTGGGGTGTCTCCACAGGAACGCACCTATATTCCAGAGGACCAGAGACACGCCAACAAAAATCCTCAGGCA---TTCTGTTACTCAGAAACCATTCCTGCTCCCACGGGGAAGGATGACGCCCAGCAGAAATCGGTAAGTTCTTTCCCCTT-GGCCAAGCATAGACCTGTTTGAAGAGCCCAACTGTGCTTCATCACAGTCGTGCAGGGTTTCCATCTTCAAGCCCTTGAGCGCTTTCCAAGGTGTCATTCCTCCTCTCCCTTTCTTGCTATTTAAACTCTGCATGAAGAAAGACAGACTTTTCTCAGTTAGACTGTGAATTATCTTCCCACTCTAAAAAGGAGACAAACCATTGTCTGTGCAGTACGT----C----TGGGCGGTGCTCCTCAGCTTCCAATCTTGTCTGCATCTGTTGCGGCTGCAGGAGCAGTGGCACATCCCTGGGTCACCTCTAGGCTGTTTAAGAGGG-AGCAGGAAACACAGGTAACTGGACCAAACACCTCACTTGCACATCTTTGACCCCTTCTTTC-----------------TTTAATTTCAGGATATGGAGCTGCTTCGGTTTTCCCTGGTTCTCATCCAGTCCTGGTTGACCCCCGTACAATACCTAAGCAAAGTGTTCACAAACAACCTGGTTTTCGGCACCTCAGACAG Coccyzus_americanus CTGGCTGCTGAGAACTACAAAGAATTCGTAAGTGTTGTGATGTGCTTGCATCTCCTCTGCATTAGCTTGACACATT--CA--------GAACC-AT-------CACACAGCTTCACATCTGGTTTGGGACACAGACTAGAAATA--GATTTTTCAACTATTAGTATATTCTCTGACAGCTCTTGATGAGG-TGAAA--GTCTTAATAGGAC-AGGACAGGTTATGTTCTMTCAGCCAGAACCCTGTCTCCTCCTTACAGCTCTCTGTCTCG--------ACCTCTGATCTTCCACAGTCCCTTCCTCAAGGCCATTGCTGCT-CACATTCAAACC--TAC-T-GCACAGGACAG-GCTGTATCAAAGAGAATCCTGGTTCTGAAAGAAGAGGGATATGGCACAGGTATT-TTACAAG--------GTGATGGTCACCTACAGCCCTGGCTGATTCCAAGTGCTTTGAGCTGTCTTGTGTGTCCAAGAGAAAGGCAACAAAGCTGGGGAGGGGACTGGAGCTCAGGGATCATGG-GACTGGCTGAAGGAACTGGAGTTGTTCAGCCTGGAGAAGAGGAGGCTGAGGAGAGACCTCATCACTATCTAAA---TCCAG-AAGGAGGTCGTAGTGAGGTGAGGATTGGTCTCTTCTCGCAGGTAGCAAATGATAGGACAAGAGGAAATAGACTCAAGTTGCACCAGGGCAGGTTCAGATTGGATATTAGGAAACACTTCTTCCCCAAAAGGGTTCTCAGGCCCTG-CAGAGGCTGCCCAGGGCAGTGGTGGAGTCACTATCCTTGAAGGTATTTAAAAGATGGGTAGAYAAGGTGTTCGGGAGTGGTTTAGTAGTGGACAGGTATAATTGAACTTGATAATCTCAAAGGTCTTTTCCTTCCAAACAATTCTCTGATTCTATTCTATGATTCTATGATCCAGTTTCTGCTGTTGCCAGGAGCTGGAATGAGCTGTTCCTTTGCTAAGAGC------TGTCCTT-GGGGG-TCACCTACTTCTTGGGWGAACCCAGTTTAAGTGTATTTTGTGTTCATTTTAGCACCTTGTCTTAGTG----AGAGGAAGACCTTTACGTCCAGGAACTACTGCATCAGCAAGGAAACTCC-TG-TTCCTCCCTGCCAGCCCTGTACAGAGCCRCCTTGTAGAATCAAAAAACCACAGAATGGTTTGGGTTGGAAGGGACCTCAAAGCCCATCCAGTTCCAAG-CCCTGAAATGGGCCGGGACACCACCCACTGGATCAGGG-GCTCCAAGCCCCATCCAACCTGACCTTGAACCCCTCCAGGGATGGGGCAGCCACCGCTTCTCTGGGCAACCTGGGCCAGGGCTTCCCCACCCTCACAGGAAAACATTTCTCCCTAAGATCTCATCTCAATCTCCCCTCTTTCAGATAAAAGCCATTCCCCCTCATCCTATTCCCACACTCCATGATCAAGAACCCCTCCCCAGCTTTCCT---------------------------------------------------------------------------------------------AGAC---TGCCTTTTTGTCC-TGGAAGTACACATCTCACA--TTAATTTCTTGCAAAGAATAACCATTTAGAACAGCTTA-GGAAAATTTTGTCGCAAGTGAGTCTCTAGACAAAACTTGTATTTAAATAAAAGTGCAACTTAATAGGGCTTGATGCTCAGGTCATG-CTATTACTTACTGCATGAAGTAAAGATAT----------------GAGACAAAAACAGGTTATGTGTCTTTTTAGGTAAAAGATTCTATGTGCACACACAGCTCCTTGTGTCACTTAGCTCAGATTTCAAAGTTTCCTAGTGCTTATCCTCAATTTATCAGCATTCCTGCCCGGGTGTCCAGTGTGAGTTCACTCCAGAGTTCAGATCTGAGGATTCACTAAGTAGACTCTCAGGTATCAGATTTTAGAAGGTAAATA-----ACAGAGARATACGGCAACATAGACAACTCTGAGAAGAGAGACCAACTCCACAGAGAGGCACCAGCCATGAACCAAGAAATCCCTGGGCAATTCCACTCTCGCAGACTCTTTACCCAACCCTCATAAAATGACTCCATCCAACAGGAATTTGGGGTC-------TTCTTGTCCTCATTGGATTCCTGTATTTTCAGAGAGATCATGATCTTG--------------ATGTTGATGA------TCCATGAA-CCTCTGTATTTTTCTGTTTCTCCTTGACTCAGGAGCCATGTGTTGACTGAACAGCTTGTATGTACTGGGAAAGTTCTTCAGTGGAAATTTCYAGCTTGTAGCTCRGTGCTTCAGAGCCAGTCTGGCTACTCCTGCTGGGACAGCCAAGCAAACAGCATAATAAGTGACACAATAGTATAACTCTAAGTGATTTATTCTACATAAAATATAATTCTCTTTTGGCTAAACAAGCTGTTAAAGAGGAGAATTCCCCAGTCATGCAGTCCAACTGCCACCCAGGGATGATTCAAATGGGGCTCACCACTGATTGGTTGTCAGTAAAAGATCTCATTGCATTGAGAAGCACTCTTGAGA--------GGCACGAGGGGAGGTCATCACCACACAGTCACGGTGCCCAGCAGCAGGAGCTCAAAGCAGGCTCCATTAGGTTTTCATACTTATGGGATAAAAAGGATTGACTCACAGCCAAATTGCATAAAACAG-------------GCTCTTTATCAGTGTTTGCTGTATCACTCTGCTCCTTGTGGGTTTCTCAGAGAAGTTCTTGGCCCAGC-TGTGGGCAGGCCTTTACCTCCCCTGAAGCCTGAGCAAAAGCAGCAGCAGTTTGGCTAAAGGATGGGTGGAATGCATCCATCACAAGTGTCTG-TGGTCTTCTCTCAGCACATGGGCAACAGATCT------GAGTACATTTGAGATGTCTCCACAGGAACGCACCTATATTCCAGAGGACCAGAGACATGCCAACAAAAATCCTCAGGCA---TTCTGTTACTCAGAAGCCATTCCTGCTCCTACGGGGAAGGATGAYGCCCAGCAGAAATCGGTAAGTTCTTTCCCCTT-GGCCAAGCATAGACATGTTTGAAAAGCGCAGATGTGCTTCATCGCAGTCACGGAGGGTTTCCATCTGCAAGCCTTTCAGTGCTTTCCAAGGTGTCACTCCTTTTCTCCCTTTCTTGCTATTTAAAACCAACATGAAGAAAGACAGGCTTTTCTCA----GAC-----------CCCCCACCTCTAAGAGGAGACAAACCATTGTCTGTGCAGGACATGT-----------------TCCTCAGCTTCCAATCCTGTCTGCATCTGCTGCAGCTGCAGGAGCAGTGGCACATCCCTAGGTCACATCTAAGCTGTTTCAGAGGG-AGCAGGACACACAGGTAACTCTACCAAATACCTCATCTGCACATCTTTGGCCTTTTCTTTC-----------------TTTAATTTCAGGACATGGAGCTGCTTCGATTTTCCCTGGTTCTCATCCAGTCCTGGTTGACCCCTGTACAATACCTGAGCAAGGTGTTCACAAACAACCTGGTTTTCGGCACATCAGACAG Phaenicophaeus_curvirostris CTGGCTGCTGAGAACTACAAAGAATTCGTAAGTGTTGTGACGTCCTCGCATCTCCTCTGCATTAGCTTGACACATT--CA--------GGACC-AT-------CACACGGCTTCCCACCTGGTGTGGGAAACAGACTAGAAACA--GACTTTTCAACTATTAGTATATTCTCTGACAGCTCTTGATGAGG-TGAAA--GTCTTAATAGGAC-TGGACAGGTTATGTC--ATCAGCCAGAACCCTGTCCCCTCCTCACAGCTCTCTGCCTCG--------ACCTCTGATCTTCCACAGTCCCTTCCTCAGGGCCATTGCTGCT-CACATCCAAACC--TAC-T-GCACAGGACAA-GCTGTCTCAAAGAGAACCCTGGTTCTGAAAGCAGAGGGATRTGGCACAGGTATT-TTAAAAGGTTCTCCTGTGATGGTCACTTACAGCCCTGGCTGATTCCAAGTGCTTTGAACTGTCTTGTGTGTCCA-GAGAAGGGCAACAAAGCTGGGGAGGGGACTGGAGCACAGGGATCATGG-GACTGGCTGAAGGAACTGGAGTTGTTTAGCCTGGAGAAGAGGAGGCTGAGGGCAGACTTCATCACTATCTACA----TCTGAAAGGAGGTTGTAGTGAGGTGGGGATTGGTCTCTTCTCACACGTAGCAAGTGATAGGACAAGAGGAAATAGACTCAAGTTGCACCAGGGCAGGTTCAGATTGGATATTAGGAAACACTTCTTCAACAAAAGGGTTCTCAGGCCCTG-CAGAGACTGCCCAGGGCAGTGGTGGAGTCACTATCCTTGAAGGTATTTAAAAGATGGGTAGATAAGGTGCTTGGGAGTGGTTTAGTAGTGGACAGGTATAATTGAACTTGATGATCCTAAAGGTCTTTTCCCTCCAAACAATTCTCTGATTCTATTCTCTGATTCTATGATCCAGTTTCTGCTGTTGCCAGGGGCTGGAATGAGCTGTCGTTTTGGTAAGAGC------TGTCCTT-GGTGG-TCATCTACTCCTTGGGAGAACTCAGTTTAAGTGTATTTTGTGTTCATTTTAGCACCTTGCCTTAGTA----AGAGGAAGACCTTTAGGTCCAGAAACTACTGCATCAGCATGGAAACTCC-TG-TTCCTCCCTGCCAACCCTGTACAGAGCCGCTTCATAGAATCAAAAAATCACAGAATGGTTTGGGTTGGAAGGGATCTCAAACCCCACCCAGTTAAAAG-CCCTGAAATGGGCAGGGACACCTCCCACTGGATCCGGTTGCTCAAAGCCCCATCCAACCTGGCTTTGAATGCCTCCAGGGATGGGGCAGCCACTGCTTCTCTGGGCAACCTGGGCCAGGGCCTCCCCACTCTCACAGCAAAACATTTCTCCCTAAGATCTCATCTCAATCTCCCCTTTTTCAGATAAAAACCATTCCCCCTCATCCTATTTCCGCACTCCATGATCAAGAACCCCTCCCCAGCTTTCCT---------------------------------------------------------------------------------------------AGAG---TGCCTTTTTGTAC-TGGAAGTACACATCTCACA--TTTATTTCTTGCAAAGAATAACCATGTAGAACAGCTTA-GGAAAATTTTGTCTCAAGTGAGTTTTTAGACAAAACTTGTATTTAAATAAAAGTGCAACTTAATAGGGTACGATGCTAAGGTCGCATCAATTACTTACTGCATGAAGGAAAGATAT----------------GAGGCAAAATCAGGTTATGTGTACTTTTAGGTAAAAGATTCTATGTGCACACACAGCTCCTTGTGTCACTTAGCTCAKATTTCAAAGTTTCYTAGTGCTTATCCTCAATTTATCAGCATTCCTGCCTGGGTGTCCAGCATGAGTTCACTCCAGAGTTCAGATCTGAGGATTCACTAAGCAGACTCTCAGGTATCAGATTTTAGAAGGTAAATAATTTAATAGACAGATACGGCAACATGGACAGCTATGAGGAGAGAGACCAACTCCACAGAGAGGCGCCAGCCATGAACCAAGAAATCCCTGGGCAATTCCACTCTCACAGACTCTTTACCCAACCCTCATAAAATGACTCCATCCAACAGTAATTTGGGGTCCGGGGTCTTCTTGTCCTCATTGGATTCCTTTATTTTCAGAGAGGTCATTATCTTG--------------ATGTTGATGA------TCCTCGAA-CCTCTGTATTTTTCTGTTTCTTCTTGACTCAGGAGCCATGTGTTGACTGAACAGCTTGTATGCACTGGGAAAGTTCTTCAGTGGAAATTCCCAGCTTGTAGCTTGGTGCTTCAGAGCCAGTCTGGCTACTCCTGCTAGGACAACTAAGCAAACAGCATGCTAAGTCACACAATAGTATAACTCTAAATGATTTATTCTACATAAAATACAATTCTATTTTGGCTAAACAAGCTGTTAAAGAGGAGAATTCCCCAGTCATGCAGCCCAGCTGCCACACGGGGATGATTCAAATGGGGCTCACCACTGATTTGTTGTCAGTAAAAAATCTCATTGCATTGAGAAGCACTCTTGAGAAGTGTCCTGGCACAAGGGGAGGTCATCACCACGCAGTCATGGTGCCCAGCAGCAGGAGCTCAAAGCAGGCTCCATTAGGTTGTCATATTTATTGGATAAAAAGGATTGACTCACAGCCAAATTGCATAAAATAG-------------GCTCTTTATCAGTGTTTGCTGTATCGCTCTGCTCCTTGTGGGTTTCTCAGAGAAGTTCTTGGCCCAGC-TGTGGGCAGGCCTTTACCTCCCCTGAAGCCTGAGCAAAACCAGCAGCAGTTTGGTTAAAGGATGGGTGGAATGCATCCATCACAAGTGTCTG-TGGTCTTCTCTTAGCACACGGGCAACAGATCT------GAGTATATTTGGGATATCTCCACAGGAACGCACCTATATTCCAGAGGACCAGAGACATGCCAACAAAAATCCTCAGGCA---TTCTGTTACTCAGAAGCCATTCCTGCTCCTACGGGGAAGGATGACGCGCAGCAGAAGTCGGTAAGTTCTTTCCCCTT-GGCCAAGCATAGACATGTTTGAAAAGCGCAGTTGTGCTTCATTGCAGTCACGGAGGGTTTCCATCTGCAAGCCTTTCAGTGCTTTCCAAGGTGTCATTCCTTTTCTCCCTTTCTTGCTATTTAAACCCCACATGAAGAAAGACAGGCTTTTCTCAGAT---------------TTCCCACCCCAAAGAGGAGACAAACCATTGTCTGTGCAGGACATGTG------TGGGTGGTGCTCCTCAGCTTCCAATCATGTCTGCAGCTGCTGCAGCTGCAGGAGCAGTGGCACATCCCAGGGTCACCTCTAAGCTGTTTCAGAGGG-AGCAGGACACACAGATAACTCTACCAAATACCTCACTTGCACATCTTKGGCCCTTTCTTTC-----------------TTTAATTTCAGGATATGGAGCTGCTTCGGTTTTCCCTGGTTCTCATCCAGTCCTGGTTGACCCCTGTACAATACCTAAGCAAGGTGTTCACAAACAACCTGGTTTTCGGCACATCAGACAG Geococcyx_californianus CTGGCTGCCGAGACCTACAAAGAGTTCGTAAGTGTTGTGGCCCCCAGGCATCTCCTCTGCGTTAGCTTGACAGGTC--CA--------GGACA-CT-------GCCACAGCCTCTCTCCCAGGGT----AACTTCCTAGAAACAAAGACTCTCCAACTCTAAGTGTCTTCTCTGCCAGTTCTGGATGAGG-TGAAAGGGTCTTAATAGGAC-AGGACAGGCTACGTCCCAGCAGCCTAAACCCTGTCTTCTCCTCACAGCTCTCTGCTCCCACGCCCCCACCTCTGATCCTCCAGAGTCCCCTCCTCGGGGCCATTGCTGCTTCATGTCCAAAAC--CAC-T-GCACAGGACCA-GCTGTCTCAGAGGGAAACCTGGCTCTGAAAGCAGAAGGAGATGGCATAAATATT-TTTCAGGACTTTCCTGTGAAGGTCACCTACTGCCCCAGCTGATTCCGTGTGCTCAGAACTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTTCTGCTGTTGCCCAGACCTCGAATGAGCTGGCACTTTGGCATGAGC------TGTACTT-GGGGG-TCACCTACTCCTTGGGAGAACCCGCTCCAAGTGTGGTTTGTGTTCAACATAGCACCTTGGTTTAGTG----ACAGGAAGACATTTAGGTCCAGAAGATACTGTGCCAGCTTGGAGACTCC-TG-TTCCTCCCTGCCAACTCTGTACAGAGCCACCTCATAGAATCACAGATTTATGGAATGGTTTGGGTTGGAAGGAACCTCAAAACCCATCCAGTGTC-ACCCCCTGCCATGGGCAGGGACCCCTCCCACTGCATCAGTGGGCTCAAAGTCCCATCCAACCTGGCCTTGAACACTTCCAGGTCTGGGGCAGCCACCACTTCCCTGGGCAACCTGTGCCAGGGCCTCCCAACCATCACAAGAAA------------------------------------------------------------------------------------------------------------ACAGCACCCACCTGACTTCAGTCTCCTTTCCAGGAGCTGTAGAGAGCAATGAGGTCTCTCCTCAGCCTACTCTTCTCGAGGCTAAACAATCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAAGGCATCCCAATACAAGAGGAGTTCATCACCATGCAGTCATACTGCCCAGTTCATAG-----AAAGC---TCCCTTTAGGCTGTCAGATTTATGGGATAAAAAGGATTGAATTGTAGTCAAATTGCATAAAATAGAGCTATTCATGAGGCTCTTTATCAGTGTTTGCTG-GTTGCTGTGCTTCATGTGGGTTTCCTTGAGGAGTTCCTGGCCCCCCCTGCAGGTAGGCCTTTACCTCCTCTAGAGCCTGAACCAAACTGCTGCTGGTTTGGTTAAAGGAT-------------CCATCACACGTGTCTG-TGGTCCTCTCCCAGTACATGGGCAACAGATCT------GAGTGTACGTGGGATGTCTCCACAGGAACGCACCTACATTCCAGAGGACCAGAGACACGCCAACAAAAATCCTCAAGCA---TTCTGTTACTCAGAAACCATCCCTGCTCCCACAGGGAAGGACGATGCCCAGCAGAAATCGGTAAGTTCTCTTCCCTG-AGCCAAGCATGGACCTGTTTGAATAGCCCAGCTGTCCTTCATGATAGACACAAACGGTTCCCATCTGCGAGTACTTCTGCGCTTTCTAGGGTATCATTCTTCCTCTCCCTTTCTTACAATTTAAACCCTAAATGAAGAAAGACAGACTGTTCTGGGTTAGGCTGTGAATCATGTTCCCACCCCAAAGAGGAGACAAACTATTGTCTGCACAGGACACGTGCC----TGGGTAGTGCTCCTTAGCTTCCAAACTTG---------------GCTGCAGGAGCAGTGGCACGTCCCTGGGTTAACTCCAGGCTGTTTCAGACAG-AGGGGGACACACAGGTAACTCTACCAAACAGCTCACCTGCACAGCTTTGATCCTTTCTTTTTTT--------------TTAAATTTCAGGACATGGAGCTGCTTCGGTTTTCCCTGGTTCTCATCCAGTCCTGGTTGACCCCGGTACAGTACCTAAGCAAGGTGTTCACAAATAACCTGGTTTTCGGCACCTCAGACAG Grus_canadensis CTGGCTGCTGAGACATACAAAGAGTTTGTAAGTGTTGTGGCCTCCGGGCACCTCCTCTGCATTACCTTGATGGTTT--CA--------GGACC-AC-------GCCACAGCTTCCCACCCAGTGT----AACTTCCTAGAAACAGAGACTTTTCAATGATTAGTGTCT-----------TCCTGATGAGG-CGAAAGGGTCTTAATAGGAT-AGGACAGGTTATGTCCCACCAGCCTGGACCCCATCTCCTCCCCGCATCTCTCCATCTCC--------ACCTCTGATC--ACACAGTCTCCTCCTCAGGGCCATCACTGCC-CGTGTCCAAACC--TAC-C-GCACAGGGTCA-GCTGTCTCAGAGAGAAACCTGGCTCTGCGAGCAGTGCGAGACAGCACAGGTATT-TTGCAAGACTTTCCTGTGACAGTCACCTACGGCCCTGACTGATTCCAAGTGCCTAAACCTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTTCTGCTGTTGCCAGGAGCTGGCATGAGCTGTCACTTTGG------------------------GG-TCATCTACTCCTTGGGAAAACCCAGTCCAAGTGTGTTTCGTTCTCACCTTAGCACTTTGGCTTAGTG----AGAAGACGACCTTTAGGCCCAGAAGCTACCGTGCCAACATACAAACTCC-TG-TTCCTACC---------GGTAC--AGACACCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATCTCACA--GTTATTTCTTGCAAAGAGTAACCATTCAGGACAGCTTG-GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGTCTG-TGGTTTTGTCCCAGCACATGGGCAACAGATCA------GAGTGTATTTGGGATGTCTCCACAGGAACGCACCTATATTCCAGAGGACCAGAGACATGCCAACAAAAACTCTCAGGGAGCATTTTGTTACTCCGAAACCATTCCTGCTCCCACGGGGAAGGATGATGCCCAGCAGAAATCGGTAAGTTCTCTCC---------AAGCACAGACCTGTTTGAAGAGCTCTGCTGTGCTTCATCACAGGAACAGAGGGTTTCCACCTGTGAGTACTTCAGCACCTCACGAGGTGTCATTCCTCCTCTCCCTTCTTTACTGTTTAAACCCTGCATGAAGAAAGAAAGATTCTTCTGGGTTAGACTATAAATCATATTCCCGCTCCAAGGAGGAGAAAAGCTATTGTCTGCGCAGGACATACGCC----TGGGTGGTGCCCCTCAGCTTACAAACTTGTCTGCGTCTGCTGAAGCTGCAGAGACAGTGGCACATCTCTGGGTCACCTCCAGGCTGTTCCAGAGGG-AGCAGGACACACAGGTAACTCTACTGAA----------GTAGAGCTTTGACCCTTTCTTTT-----------------TTTAATTTCAGGATATGGAGCTTCTTCGGTTTTCCCTGGTTCTCATCCAGTCCTGGTTGAACCCAGTGCAATACCTAAGCAAGGTGTTCACAAACAATCTGGTTTTTGGCACCTCAGACAG Rallus_limicola CTGGCTGCTGAGACATACAAAGAGTTTGTAAGTGTCGTGGCCTCCAGGCACCTC------------CTGACAGCTT--CA--------GGAAC-AG-------GTCCCAGCTTCCCAAACAGTGT----AAC-CCCTATAAACAGAGACTCTCCCACTGTTAGCACCTTCTCTGTCAGTTCCTGATGAGGCACAAAGGGTCTTCATAGGAC-AGGACAGGTTGTGGCCCATCAGCCTGGACCCTGTCTGCCTCCTGCAGCTCTCTGCTTCC--------ACCTCTGATG----ACAAT-------------CCACCACCACC-CACATCCCAACC--TTC-T-------------GCTGTCTCAGAGAGAA-CCTGGCTCTCAGAGCAAGGGG-GGT-GCACAGGTATT-TTAT--GACTTTCCTGTGACAGTCACCTACTGCCCTGGCTGACTCCAAGCGCTTAAAACTACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTTCTGCTGCTGCCAGGAGCTGGCATGAGCTGTTGCTTTGGCAAGAGCAAAAGCTGTCCTT-GGGGG-TCATCTAGCCCCTAGGAGAACCCAGTCCAAGTGTGTTTTGCATTCACCTTAGCACTTTGA-TTAGGG----AGAGGAAGACCTTTAGGTGCAGAAGCCGCTGTGCCAATATAACCCCCCCCTG-TTCCTACCTGCCAACCCTGTGCAGACACACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTCTCACA--TTTACTCCTTGCAAAGA------------GACAGCTTG-GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTGCACTGGTTTTCTCCCAGTACACAGGCAACAGATCT------GAATGTGTTTGGGATGTCTCCACAGGAACGCACCTACATTCCAGAGGACCAGAGACATGCCAACAAAAATTCCCAGGCAGCATTTTGTTACTCAGAAACCATCCCTGCTCCCACAGGGAAGGATGATGCCCAGCAGAAATCGGTAAGTTCTCTCCCCA-GGGCCAAGCACAGACCTGTT------------------------------------------------TGRGTACTCCAGTGCTTCCTGAGGGATCATTCCTCCTCTCCCTTT---ACTATTTGAACCCTGCATT--GAA-GAARGACTCTTCTGG-TTAGACSGTAAATCACRTTCCTACCCCAAGGAGGAGAAAAG------------CAGGGCATA-GTCTGGGTGGGTGGTGCTCCTCAGCTTGTGAACTCAACTGCC-----AAAAACCTCAGGAACAGTGTCACATCTCTGGGTCACCTCCAGGCTGATTCAGAGGG-AGCAGGACACACAGGTAACTCTACTCAA----------GTAGAGCTTTGATCCTTCCTSTTCGTTTTTTGTTTTTTTTTTAAATGTCAGGATATGGAGCTGCTTCGTTTTTCCCTGGTTCTCATCCAGTCCTGGTTGAACCCTGTGCAGTACCTAAGCAAGGTGTTCACAAACAACCTGGTTTTTGGCACGTCAGACAG Tauraco_erythrolophus CTGGCTGCCGAGACATACAAAGAATTCGTAAGTGTCGTGGCCTCTGGAC-----------------TTGATGGTTTGTCATGGCCTCTGGACTTGTAGGGGAAGCCACAGCTTCCC--CTAGTGT----AACTTC-------------------TACTATTGGTGCCTTCTGTGCCAGCTCTCAATGAGG-AGAAMGGGTCTTAACAGGTT-AGGACARATTACGTCCCATCAGCCCAGACCCTGTCTCCTCCTCACAGCTCTCTGCCTCC--------ACCTCTGATCCTGCACAGTCCCCTACTCAGGGCCATGGCTGCC-CGTGTCCAAACC--TAG-T-GCACAGAGTCA-GCTGCCTCAAAGAGAAACCTGGCTCTGAAAGTGGTGGGAGATGGCACAGATATT-TCACAAGACTTTCCTGTGACGGTCACCTTCAGCCCTGGCTGATTCCGAGTGCTTAAAACTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTTCTGCAGTTGCCAGAAGATGGTATGAGCCATCACTTTGGCAAGAGC------TGTCCT--GAGGG-TCATCTGCTCCT-GGGAGAACCCAGTCCAAATGTGTTTTGCATTCAGCTTAGCACTTTGGCTTAGTG----AGAGGAAGACTTTTAGGTCCAGTAGCTACTGTGCCAACATACAAACTCC-TGTTTCCCACCTGCCAATCCTGTACACAGACACCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGTCTCACA--TTTATTTCTTGCAAAGAGTAACCATTCAGCACAGCTTG-GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCATCTA-CTGTTTTCTCCCAGTACACAGGCAACAGATTTAGATTTGAGTGTATTTGGGATGTCTCCACAGGAACGCACCTATATTCCAGAGGACCAGAGACACGCCAACAAAAATTCTCAGGCAGCATTTTGTTACTCAGAAACCATTCCTGCTCCCACAGGGAAGGATGATGCCCAGCAGAAATCGGTAAGTTCCCTCCCTC-AGGGCAAGCACAGACCTGTTTGAAGAGCCCACCTGTGGTTCATCACAGGAACAGAGGGTTTCCATCTGTGAGCACTTCAGAGCTTCCTGAGGTATCATTCCTCCTCTACCTTTTT-ACTATTTAAACCCTGCATGAAGAAAGAAAGACTCTTCTGGTTCAGACTAT------------------AAAG----------CTCTTGCTTGCACAAGAC---------------------------------AAACTTGTCTGTACCTGCTGAAGGTGCAGGAGCAGTGGCACATCTCTGGGTCACCTCCAGGCTGCTTCAGAAGG-AGCAGGAGACACAGGTAACTCTACCAAATACTTCACCTGCACAGCTTTGACCTTTTCTTTT-----------------ATTAATTTCAGGACATGGAGCTGCTTCGGTTTTCTCTGGTTCTCATCCAGTCCTGGTTGACCCCGGTGCAATACCTGAGCAAGGTGTTCACAAACAATCTGGTTTTTGGCACCTCAGACAG Choriotis_kori CTGGCTGCCGAGACATACAAAGAGTTCGTAAGTGTYGCGGCCCCTGGGCATCTCCTCCGCGCTAGCAGGATGGTTT--CA--------GGACC-AT-------GCCACAGCTTCCCACCCACTAT----AACTTCCTACAAACAGAGACTTTTCAACTATTAGCATCTTTTCTGCCAGCTCTCG-TGAGG-AGAAAGGGTCTCGATAGGAC-AGGACA----ATGTCCCACCRGCCTGGACTCTGTCTCCTCCTCACGGCTCTCAGCCCCC--------WCCTCTG------CAYGGTCCCCTCCCCAGGGCCATTGCTGCC-CGTGTCCAAACC--TAC-C-RCTCAGGGTCA-GCTGTCTCAAAGGGAAACCTGGCTCTGCAAGCAGTGGGAGATGGCACAGATATT-TTGCAAGACTTGCCCGTGACGGCCACCCATGGCCCCGGCTGATGTCAAGTGCTTACAACGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCCTGCTGTTGCCAGAAGCTGGCATGAGCTGTCACTTTGGCAAGAGC------TGTCCTT-GGGGG-TCATCCACCCCTTGG-AGAACCCAGTCCCAGGGTGTTTTGCCTTCACCTTAGCACTTTGGCTCAGTG----AAAGGAAGACCTTTAGGTCTAGTAGCTAKTGTGCCAACATAAAAACTCC-CG-TTCCCACCTGCCAACCCCGTA--GAGACACCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTTTCACA--TYTATTTCTCGCAAAGAGTAACCGCTTAGGTCAGCTCGGGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGTCTA-TGGTCTTCTCCCAGTACACAGGCAACAGATCC------GACTGTGTTTGGGATATCTCCACAGGAACGCACCTATATTCCAGAGGASCAGAGACACACCAACAAAAATTCTCAGGCAGCGTTTTGTTATTCAGAAGCCATCCCGGCTCCCACAGGGAAGGATGATGCCCAGCAGAAATCGGTAAGTTCTGTCCCCT-GGGCC-AGCACAGAGCTGTTTGAAGAGCCCAGCTGTGCTTCATTACAGGAACAAAGGGTTTCCATCTGTGAGAATTTCAGTGCTCCCTGAGGTGTCATTCCTCCTCTCCCTTTTTTACTATTTAAACCCTGCATGAAGAAAGAAAGACTCCTCTGG-TTG--------------------------------------------------------------T----TGGGTGGTGCTCCTCACCTTGCAAACCTGTCTGCATCTGCTGAAGCTGCAGGAGCAGCAGCACATGTCTGGGT------------GTTTCAGAGGG-AGCAGGACATG-------CTCTACCAAATACCTCACCTGCACASCTTTGACCCTTTTTTTTTTT--------------CTTATTTTCAGGACATGGAGCTTCTTCGGTTTTCCCTGGTTCTCATCCAGTCCTGGCTGACCCCGGTGCAATACTTAAGCAAGGTGTTCACAAACAATCTGGTTTTTGGCACCTCAGACAG ; END; BEGIN SETS; CHARSET GH1_exon2 = 1 - 27; CHARSET GH1_exon3 = 2978 - 3094; CHARSET GH1_exon4 = 3525 - 3634; CHARSET TE38 = 471 - 931; CHARSET TE39 = 1162 - 1477; CHARSET TE40 = 1479 - 1570; CHARSET Uniditentified_insertion = 1655 - 2904; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 3634; END; BEGIN TREES; Title 'Trees from "GH1.Hanetal2010.Fig3.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Coua_cristata, 2 Crotophaga_sulcirostris, 3 Cuculus_canorus, 4 Coccyzus_americanus, 5 Phaenicophaeus_curvirostris, 6 Geococcyx_californianus, 7 Grus_canadensis, 8 Rallus_limicola, 9 Tauraco_erythrolophus, 10 Choriotis_kori; TREE GH1Fig3 = (((1:0.08211746,((4:0.05230629,5:0.0394973):0.0353362,3:0.07881127):0.04789849):0.01078666,(6:0.01804986,2:0.07455015):0.02467373):0.018317055,((7:0.0574585,8:0.11632324):0.034231995,(10:0.050973817500000004,9:0.092751585):0.025486908750000002):0.025486908750000002[%triangled = on ])[% ] [% ] [% setBetweenBits = selectedsetBetweenBits = triangled ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 3634; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 3634; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1287769771815; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7239659486015641654; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2971876873680750712; checksumv 0 2 1991882141 null getNumChars 3634 numChars 3634 getNumTaxa 10 numTaxa 10 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 456116.0 sumSquares -1.0145709240540253E20 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 723 589; setLocation 451 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7239659486015641654 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7239659486015641654; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 623 522; setLocation 451 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2971876873680750712 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 50; setAnnotationSize 40; setFontIncAnnot 0; setFontIncExp 0; setSize 623 482; setLocation 451 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel on; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;