#NEXUS [written Fri Dec 03 12:25:44 BRST 2010 by Mesquite version 2.72 (build 528) at Marilia-PC/192.168.0.132] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=57; TAXLABELS Chiranthodendron_pentadactylon Fremontodendron_californicum Pentaplaris_doroteae Gossypium_hirsutum Abutilon_theophrasti Camptostemon_schultzii Matisia_palenquiana Ochroma_pyramidale Patinoa_sphaerocarpa Septotheca_tessmannii Bernoullia_flammea Huberodendron_patinoi Gyranthera_caribensis Scleronema_micranthum Catostemma_fragrans Adansonia_digitata Adansonia_gregorii Adansonia_grandidieri Adansonia_za Cavanillesia_platanifolia Bombax_buonopozense Bombax_ceiba Pachira_quinata Spirotheca_rosea Pachira_flaviflora Pachira_brevipes Pachira_insignis Pachira_minor Pachira_aquatica Pachira_glabra Eriotheca_gracilipes Eriotheca_pubescens Eriotheca_pentaphylla Eriotheca_candolleana Eriotheca_parvifolia Eriotheca_dolichopoda Eriotheca_obcordata Eriotheca_surinamensis Eriotheca_sp Eriotheca_macrophylla Eriotheca_longipedicellata Eriotheca_longitubulosa Eriotheca_roseorum Eriotheca_discolor Eriotheca_ruizii Eriotheca_squamigera Pseudobombax_marginatum Pseudobombax_croizatii Pseudobombax_grandiflorum Ceiba_aesculifolia Ceiba_acuminata Ceiba_schottii Ceiba_pentandra Ceiba_crispiflora Ceiba_speciosa Neobuchia_paulinae Rhodognaphalon_schumannianum ; END; BEGIN TREES; Title 'trees from Bayesiana analyses- combined data'; LINK Taxa = Taxa; TRANSLATE 1 Chiranthodendron_pentadactylon, 2 Fremontodendron_californicum, 3 Pentaplaris_doroteae, 4 Gossypium_hirsutum, 5 Abutilon_theophrasti, 6 Camptostemon_schultzii, 7 Matisia_palenquiana, 8 Ochroma_pyramidale, 9 Patinoa_sphaerocarpa, 10 Septotheca_tessmannii, 11 Bernoullia_flammea, 12 Huberodendron_patinoi, 13 Gyranthera_caribensis, 14 Scleronema_micranthum, 15 Catostemma_fragrans, 16 Adansonia_digitata, 17 Adansonia_gregorii, 18 Adansonia_grandidieri, 19 Adansonia_za, 20 Cavanillesia_platanifolia, 21 Bombax_buonopozense, 22 Bombax_ceiba, 23 Pachira_quinata, 24 Spirotheca_rosea, 25 Pachira_flaviflora, 26 Pachira_brevipes, 27 Pachira_insignis, 28 Pachira_minor, 29 Pachira_aquatica, 30 Pachira_glabra, 31 Eriotheca_gracilipes, 32 Eriotheca_pubescens, 33 Eriotheca_pentaphylla, 34 Eriotheca_candolleana, 35 Eriotheca_parvifolia, 36 Eriotheca_dolichopoda, 37 Eriotheca_obcordata, 38 Eriotheca_surinamensis, 39 Eriotheca_sp, 40 Eriotheca_macrophylla, 41 Eriotheca_longipedicellata, 42 Eriotheca_longitubulosa, 43 Eriotheca_roseorum, 44 Eriotheca_discolor, 45 Eriotheca_ruizii, 46 Eriotheca_squamigera, 47 Pseudobombax_marginatum, 48 Pseudobombax_croizatii, 49 Pseudobombax_grandiflorum, 50 Ceiba_aesculifolia, 51 Ceiba_acuminata, 52 Ceiba_schottii, 53 Ceiba_pentandra, 54 Ceiba_crispiflora, 55 Ceiba_speciosa, 56 Neobuchia_paulinae, 57 Rhodognaphalon_schumannianum; TREE con_50_majrule = (1:0.009976,2:0.014665,((((3:0.016574,((4:0.082204,5:0.099234)0.91:0.008542,6:0.047998)1.00:0.009774)1.00:0.011647,7:0.025691)1.00:0.007744,(8:0.025476,9:0.029309)0.67:0.003479)0.81:0.003131,(10:0.046246,((11:0.026822,(12:0.026166,13:0.023384)1.00:0.011038)1.00:0.008484,((((14:0.018235,15:0.014692)1.00:0.00928,((16:0.004374,17:0.00599)0.98:0.002145,(18:0.002217,19:0.00438)1.00:0.005215)1.00:0.022461)0.65:0.001695,20:0.023518)1.00:0.004436,(((((21:0.005491,22:0.007906)1.00:0.024366,23:0.012668,24:0.03287)0.84:0.004202,((((((25:0.004675,26:0.011417)1.00:0.004393,(27:0.00468,(28:0.006799,29:0.005527)0.53:0.001181)1.00:0.002327)1.00:0.007622,30:0.004914)0.94:0.002926,(((31:0.013499,(((32:0.008164,33:0.014095)1.00:0.007871,34:0.026817)0.74:0.001362,((35:0.010921,36:0.011901)1.00:0.004125,37:0.003486)0.97:0.002651)0.93:0.002289)1.00:0.002231,38:0.006022)0.78:8.73E-4,(39:8.77E-4,40:0.005326)1.00:0.004494)0.69:0.001285)1.00:0.007673,(41:0.004753,42:0.012508)1.00:0.023883)0.88:0.003849,(43:0.011621,((44:0.008948,45:0.002373)1.00:0.007139,46:0.013038)0.86:0.00686)0.66:0.002003)1.00:0.00791)0.55:0.002223,((47:0.009384,(48:0.017062,49:0.005784)0.75:0.001552)1.00:0.022043,((((50:0.003158,51:0.002425)1.00:0.008052,52:0.008656)1.00:0.005199,53:0.011464,(54:0.001802,55:0.001443)1.00:0.005737)0.92:0.005412,56:0.007592)1.00:0.012362)0.95:0.006144)0.91:0.003048,57:0.020291)1.00:0.004362)1.00:0.011031)1.00:0.013106)0.64:0.002839)1.00:0.015897); TREE con_50_majrule = (1:0.009976,2:0.014665,((((3:0.016574,((4:0.082204,5:0.099234):0.008542,6:0.047998):0.009774):0.011647,7:0.025691):0.007744,(8:0.025476,9:0.029309):0.003479):0.003131,(10:0.046246,((11:0.026822,(12:0.026166,13:0.023384):0.011038):0.008484,((((14:0.018235,15:0.014692):0.00928,((16:0.004374,17:0.00599):0.002145,(18:0.002217,19:0.00438):0.005215):0.022461):0.001695,20:0.023518):0.004436,(((((21:0.005491,22:0.007906):0.024366,23:0.012668,24:0.03287):0.004202,((((((25:0.004675,26:0.011417):0.004393,(27:0.00468,(28:0.006799,29:0.005527):0.001181):0.002327):0.007622,30:0.004914):0.002926,(((31:0.013499,(((32:0.008164,33:0.014095):0.007871,34:0.026817):0.001362,((35:0.010921,36:0.011901):0.004125,37:0.003486):0.002651):0.002289):0.002231,38:0.006022):8.73E-4,(39:8.77E-4,40:0.005326):0.004494):0.001285):0.007673,(41:0.004753,42:0.012508):0.023883):0.003849,(43:0.011621,((44:0.008948,45:0.002373):0.007139,46:0.013038):0.00686):0.002003):0.00791):0.002223,((47:0.009384,(48:0.017062,49:0.005784):0.001552):0.022043,((((50:0.003158,51:0.002425):0.008052,52:0.008656):0.005199,53:0.011464,(54:0.001802,55:0.001443):0.005737):0.005412,56:0.007592):0.012362):0.006144):0.003048,57:0.020291):0.004362):0.011031):0.013106):0.002839):0.015897); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6010047661055940190; endTell; getWindow; tell It; suppress; setResourcesState false false 230; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 504 145; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6010047661055940190 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6010047661055940190; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 470 397; setLocation 504 145; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 470 397; setLocation 504 145; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6010047661055940190 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 987.1291386305769.5944359877901754174; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 470 397; setLocation 504 145; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;