#NEXUS [written Fri Dec 03 15:19:53 BRST 2010 by Mesquite version 2.72 (build 528) at Marilia-PC/192.168.0.132] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=48; TAXLABELS Chiranthodendron_pentadactylon Fremontodendron_californicum Pentaplaris_doroteae Gossypium_hirsutum Camptostemon_schultzii Abutilon_theophrasti Matisia_palenquiana Ochroma_pyramidale Patinoa_sphaerocarpa Septotheca_tessmannii Bernoullia_flammea Huberodendron_patinoi Gyranthera_caribensis Scleronema_micranthum Catostemma_fragrans Adansonia_digitata Adansonia_gregorii Adansonia_grandidieri Adansonia_za Cavanillesia_platanifolia Bombax_buonopozense Bombax_ceiba Spirotheca_rosea Pachira_flaviflora Pachira_brevipes Pachira_insignis Pachira_aquatica Pachira_glabra Eriotheca_pubescens Eriotheca_surinamensis Eriotheca_sp Eriotheca_macrophylla Eriotheca_parvifolia Eriotheca_dolichopoda Eriotheca_obordata Eriotheca_candolleana Eriotheca_longipedicellata Eriotheca_longitubulosa Rhodognaphalon_schumannianum Pseudobombax_marginatum Pseudobombax_croizatii Pseudobombax_grandiflorum Ceiba_aesculifolia Ceiba_acuminata Ceiba_schottii Ceiba_pentandra Ceiba_crispiflora Ceiba_speciosa ; END; BEGIN TREES; Title Trees_from_ITS_bayesian_analyses; LINK Taxa = Taxa; TRANSLATE 1 Chiranthodendron_pentadactylon, 2 Fremontodendron_californicum, 3 Pentaplaris_doroteae, 4 Gossypium_hirsutum, 5 Camptostemon_schultzii, 6 Abutilon_theophrasti, 7 Matisia_palenquiana, 8 Ochroma_pyramidale, 9 Patinoa_sphaerocarpa, 10 Septotheca_tessmannii, 11 Bernoullia_flammea, 12 Huberodendron_patinoi, 13 Gyranthera_caribensis, 14 Scleronema_micranthum, 15 Catostemma_fragrans, 16 Adansonia_digitata, 17 Adansonia_gregorii, 18 Adansonia_grandidieri, 19 Adansonia_za, 20 Cavanillesia_platanifolia, 21 Bombax_buonopozense, 22 Bombax_ceiba, 23 Spirotheca_rosea, 24 Pachira_flaviflora, 25 Pachira_brevipes, 26 Pachira_insignis, 27 Pachira_aquatica, 28 Pachira_glabra, 29 Eriotheca_pubescens, 30 Eriotheca_surinamensis, 31 Eriotheca_sp, 32 Eriotheca_macrophylla, 33 Eriotheca_parvifolia, 34 Eriotheca_dolichopoda, 35 Eriotheca_obordata, 36 Eriotheca_candolleana, 37 Eriotheca_longipedicellata, 38 Eriotheca_longitubulosa, 39 Rhodognaphalon_schumannianum, 40 Pseudobombax_marginatum, 41 Pseudobombax_croizatii, 42 Pseudobombax_grandiflorum, 43 Ceiba_aesculifolia, 44 Ceiba_acuminata, 45 Ceiba_schottii, 46 Ceiba_pentandra, 47 Ceiba_crispiflora, 48 Ceiba_speciosa; TREE con_50_majrule = (1:0.045791,2:0.020561,((((((3:0.072753,(4:0.177636,5:0.190853)0.92:0.060669)0.71:0.027806,6:0.290094)1.00:0.035554,7:0.087432)0.94:0.016942,8:0.086857)0.85:0.012051,9:0.115377)0.60:0.014772,10:0.221319,((11:0.112266,(12:0.12577,13:0.074255)0.99:0.033466)1.00:0.050344,((((14:0.040348,15:0.044295)1.00:0.035806,((16:0.003131,17:0.008194)0.92:0.013772,(18:0.004684,19:0.005917)1.00:0.016914)1.00:0.088431)0.68:0.008068,20:0.075739)1.00:0.017528,((((21:0.012852,22:0.021649)1.00:0.072218,23:0.087575)1.00:0.024087,((((24:0.013112,25:0.045904)0.98:0.009041,(26:0.009896,27:0.013805)1.00:0.007994)1.00:0.025331,((28:0.009032,((29:0.014292,30:0.008531)1.00:0.007085,(31:0.002322,32:0.011051)0.99:0.010762,(33:0.003462,(34:0.00324,35:0.003293)1.00:0.007831)1.00:0.006476)0.99:0.010739)0.79:0.006347,36:0.01733)0.81:0.008872)1.00:0.026769,(37:0.00286,38:0.027662)1.00:0.08932)1.00:0.034021)0.96:0.012604,39:0.073894,((40:0.043889,(41:0.076031,42:0.0212)0.86:0.006761)1.00:0.061751,((((43:0.00478,44:0.004767)1.00:0.015786,45:0.016833)1.00:0.016706,46:0.029003)0.51:0.004517,(47:0.002841,48:0.006531)1.00:0.010353)1.00:0.057562)1.00:0.025446)1.00:0.024089)1.00:0.049352)1.00:0.031549)1.00:0.055122); TREE con_50_majrule = (1:0.045791,2:0.020561,((((((3:0.072753,(4:0.177636,5:0.190853):0.060669):0.027806,6:0.290094):0.035554,7:0.087432):0.016942,8:0.086857):0.012051,9:0.115377):0.014772,10:0.221319,((11:0.112266,(12:0.12577,13:0.074255):0.033466):0.050344,((((14:0.040348,15:0.044295):0.035806,((16:0.003131,17:0.008194):0.013772,(18:0.004684,19:0.005917):0.016914):0.088431):0.008068,20:0.075739):0.017528,((((21:0.012852,22:0.021649):0.072218,23:0.087575):0.024087,((((24:0.013112,25:0.045904):0.009041,(26:0.009896,27:0.013805):0.007994):0.025331,((28:0.009032,((29:0.014292,30:0.008531):0.007085,(31:0.002322,32:0.011051):0.010762,(33:0.003462,(34:0.00324,35:0.003293):0.007831):0.006476):0.010739):0.006347,36:0.01733):0.008872):0.026769,(37:0.00286,38:0.027662):0.08932):0.034021):0.012604,39:0.073894,((40:0.043889,(41:0.076031,42:0.0212):0.006761):0.061751,((((43:0.00478,44:0.004767):0.015786,45:0.016833):0.016706,46:0.029003):0.004517,(47:0.002841,48:0.006531):0.010353):0.057562):0.025446):0.024089):0.049352):0.031549):0.055122); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8407565180826888782; endTell; getWindow; tell It; suppress; setResourcesState false false 230; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 694; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #8407565180826888782 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #8407565180826888782; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1050 627; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8407565180826888782 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 936.1291396776882.9143839785831401972; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1050 627; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;