#NEXUS [written Thu Jan 20 17:01:24 EST 2011 by Mesquite version 2.73 (build 544) at dhcp128036177160.central.yale.edu/128.36.177.160] BEGIN TAXA; TITLE taxa; DIMENSIONS NTAX=50; TAXLABELS Eudianthe_laeta_1341_FJ376888 Lychnis_coronaria_7494_00216 Lychnis_floscuculi_AJ634070_00236 Lychnis_floscuculi_AJ634071_00237 Lychnis_flosjovis_7566_00204 Petrocoptis_pyrenaica_2486_AJ634073 Petrocoptis_pyrenaica_2875_FJ376911 Silene_ammophila_12639_03345 Silene_aprica_6271_04306 Silene_conica_E_02309 Silene_coniflora_S_04308 Silene_conoidea_12655_02089 Silene_davidii_13374_02594 Silene_diclinis_DIC_7_02829 Silene_dioica_D184_24_a02827 Silene_dioica_D184_24_g04587 Silene_fruticosa_1064_FJ376914 Silene_heuffelii_H4_6_c02837 Silene_heuffelii_H4_6_t04589 Silene_integripetala_BOx2877_02312 Silene_latifolia_L121_9_03131 Silene_latifolia_L170_10_02835 Silene_latifolia_L200_2_03137 Silene_latifolia_L81_9_03130 Silene_littorea_2395_02630 Silene_littorea_2395_02631 Silene_lydia_L_04362 Silene_lydia_S_04315 Silene_macrodonta_13984_03120 Silene_marizii_M4_1_02840 Silene_multinervia_P_01446 Silene_multinervia_R_04363 Silene_multinervia_S_02944 Silene_nigrescens_KGB217_00644 Silene_noctiflora_O_00278 Silene_noctiflora_P_04110 Silene_pendula_12654_2088 Silene_pseudoatocion_7821_ Silene_samia_13410_00185 Silene_schafta_7615_AJ634088 Silene_stellata_6374_00188 Silene_stellata_6374_00193 Silene_subconica_1033_03493 Silene_turkestanica_12484_03157 Silene_uniflora_7827_02316 Silene_viscosa_2498_225 Silene_viscosa_2498_226 Silene_viscosa_7705_02155 Silene_vulgaris_6459_00869 Silene_zawadzkii_2447_02317 ; END; BEGIN CHARACTERS; TITLE RPB2_dna; DIMENSIONS NCHAR=997; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Eudianthe_laeta_1341_FJ376888 ATTGAGTGTATTATGGGTAAA?????????????????????????????????ACACCTTTCACCGATGTCACTGTAAGTTCTCTTTTGATGG-ACCATC--------TTTCGTTGCAGTTCGATGCTT-ATGGCGC--------ATTCCTTT-CA-------------TCCCCCCTTGTCTTTTTTAATGGT----------------------------------------------------------------------GCCCGGATACGAC-ATTTTGTCACTT-GAAAAGTTATTCAATCGTTT-------------------------------ATTTTG-TGTTTT-AGGTATTGCT--------------------------------------------------TAAG------TTTCTTTTGGGTGCTAGGTAGAATATTTATATTTATA--TGTTGG-------AAATATGGAAACAG---------GTTGTTACA----TGAGTTGATTTATTGCGGTT-GAGATTAAGGGTCT--------GAATATGATTGGTTGCCACTTGCCA--GTCAAATT-CCCA-TATCCCTTGTATTTT------AGGCCTTGCGCC--TCTTTGGAAACCATAAAAAA-GGCAAAAAAAAAAAAAAACGC----------------ATATATGTATTT-ACTCTTGTGAAAA-TATGTTACCTTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAG-TTTAGTAGTGGTCGATTGAATTCTTCTGGCTTTGTTTATAGGTGGACAACATCAGCAAGGCCCTGCAAAAATGTGGGTATCAGATGCGT??????? Lychnis_coronaria_7494_00216 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTTGGTAAGGAAGGAGACGCAACACCTTTCACCGATGTCACTGTAAGTTCTCTTTTGATCG-ACTTTC--------TTTTGTTGCAGTTTGGTGCTT-ACGGT----------------------------------------------------GATGTTTTT-------------------------------------------------------------------GTCATGATGTGGC-ATTTTTTCGCCT-GAAAG--TATTCAATTTTAT-------------------------------ATTGTGTTGTTTT-ATTCTGTGATACAAAATATTCAATATATCCATTTCTTTTGAGAAGAGTTG-TGC-----ATAAGCATAAGTTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGCTGG-------AAAGATGGATATAG---------TTTGTCAGA----CCAGTTGATTAATTGTGTTT-GAGATGGAGGGCCTGACCGCCTGAGTTTGATTGGTTTCCAG--------TTCAACTTCCCCC--ATCCCTTGTATTTT----ATAG-GCTTGTGTC--TCCTAGAAAACCATAAAGAAAGGAA---GAAAAAA----CGCGTAGGTGACAATTTGCTTCTATGTTTCTATATCGTGTGAAAA-TATGTAACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTGGTGAATTGAATTCTCCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Lychnis_floscuculi_AJ634070_00236 ??????????????????????????????????????????????????????ACACCATTCACGGATGTCACTGTAAGTT-TCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTT-------CCCCCCCCCCCCCTCGTCTTTCTT---AAAGTTTTT-------------------------------------------------------------------GTCCCTATGAGAC-ATCTTTTCGCTT-AAAAATTTATTCAATTTTTTTT------------------------------GGGTGTGGTTTT-ATTCTGTGCTACAAAATCTTCAATATTT-CATTTCTTTTGAGAAGAGCTGGTGA-----ATAAG------TTTCTTTTGGGTGCTAGA-----TTTTTT-----CA---CGTTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATTAATTGCATTT-GAGATTGAGGGCCT--------GAGTATGATTGATTGCCGG--------TTCAACTT-CTCA-TATCCCTTGTATTTT----ATAGGCCCTGCGCC--TCTTAGCAAACCATAAAAAAAGAGGAAAGAAAAAAAA--TGCTTGGGTGACAATTTGCTTGTGTGTATTTATATTGTGTGAAAA-TACGTCACCTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCACTAGTGGTCAATTGAATTCTCCTGGCTTGTC-TATAGGTGGACAATATCAGCAAGGCCCTT??????????????????????????????? Lychnis_floscuculi_AJ634071_00237 ??????????????????????????????????????????????????????ACACCATTCACGGATGTCACTGTAAGTT-TCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTT---------CCCCCCCCCCCTCGTCTTTCTT---AAAGTTTTT-------------------------------------------------------------------GTCCCTATGAGAC-ATCTTTTCGCTT-AAAAATTTATTCAATTTTTTTT------------------------------GGGTGTGGTTTT-ATTCTGTGCTACAAAATCTTCAATATTT-CATTTCTTTTGAGAAGAGCTGGTGA-----GTAAG------TTTCTTTTGGGTGCTAGA-----TTTTTT-----CA---CGTTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATTAATTGCATTT-GAGATTGAGGGCCT--------GAGTATGATTGATTGCCGG--------TTCAACTT-CTCA-TATCCCTTGTATTTT----ATAGGCCCTGCGCC--TCTTAGCAAACCATAAAAAAAGAGGAAAGAAAAAAAA--TGCTTGGGTGACAATTTGCTTGTGTGTATTTATATTGTGTGAAAA-TACGTCACCTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCACTAGTGGTCAATTGAATTCTCCTGGCTTGTC-TATAGGTGGACAATATCAGCAAGGCCCTT??????????????????????????????? Lychnis_flosjovis_7566_00204 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCAACACCTTTCACCGATGTCACTGTAAGTTCTCTTTTGCTCG-ACTTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGGTGTATTGTG--CTTCGCCGCCC-----CCCACCCCTGCCCCCCCTTCTT----GATGTTTTT-------------------------------------------------------------------GTCATGATGTGAC-ATTTTTTCGCCT-GAAAG--TATTCAATTTTAT-------------------------------ATTGT---GTTTA-ATTCTGTGATACAAAATATTCAATATATCCATTTCTTTTGAGAAGAGTAGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGCTGG-------AAAGATGGAAATAG---------TTTGTCAGA----CCAGTTGATTAATTGTGTTT-AAGATTGAGGGCCTGACCGCCTAAGTTTGATTGGTTTCCAG--------TTCAACTTCCCCC--ATCCCTTGTATTTT----ATAG-GCTTGTGTC--TCCTAGCAAACCATAAAAAA-GGAA---GAAAAAA----CGCGTAGGTGACAATTTGCTTGTATGTTTCTATATCGTGTGAAAA-TATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTGGTGAATTGAATTCTCTTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Petrocoptis_pyrenaica_2486_AJ634073 ?????????ATTATGGGTAAAGTTGCTGCTCATGTGGGTAAAGAAGGAGACGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTCGATGCTT-ATGGCG---------CATCCCTTTCA-----------CCCCCTCGTCTTTCTT----AATGTTGTT-------------------------------------------------------------------GTCCTGATGAGAC-AGTTTATCACTT-GAAAATTTATTCAATCTTTT-----------------------------ATTTTGTGCTGTTTT-ATTCTGTGGTACAAAATATCCAATATTT-CATTTCATATGAGAAGAGGTAGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTGT-----ATA--TGCTGG-------AAAGATAGAAACAG---------GTTGTTAGACAGACAAATTGATTAATTGCGGTT-GAGATTAAGGGCCT--------GAAT---ATTGGTTGCCGG--------TTCAAATT-CCCC-TATTCCTTGTAGTTT------AGGTCTTGCGTCTCTCTTAGCACACCATAAAAAA-GGAA---GAAAAAA----CGCGTA-------------ACGTATGT-----ACTCTTTTGAAAA-TATGTCTCCTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGTTCGATAGTGGTCAATTGAATTCTCCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Petrocoptis_pyrenaica_2875_FJ376911 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAAGAAGGAGACGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTCGATGCTT-ATGGCG---------CATCCCTTTCA-----------CCCCCTCGTCTTTCTT----AATGTTGTT-------------------------------------------------------------------GTCCTGATGAGAC-AGTTTATCACTT-GAAAATTTATTCAATCTTTT-----------------------------ATTTTGTGCTGTTTT-ATTCTGTGGTACAAAATATCCAATATTT-CATTTCATATGAGAAGAGGTAGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTGT-----ATA--TGCTGG-------AAAGATAGAAACAG---------GTTGTTAGACAGACAAATTGATTAATTGCGGTT-GAGATTAAGGGCCT--------GAATAT---TGGTTGCCGG--------TTCAAATT-CCCC-TATTCCTTGTAGTTT------AGGTCTTGCGTCTCTCTTAGCACACCATAAAAAA-GGAA---GAAAAAA----CGCGTA-------------ACGTATG-----TACTCTTTTGAAAA-TATGTCTCCTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGTTCGATAGTGGTCAATTGAATTCTCCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_ammophila_12639_03345 ???????????????????????????????????????????????????????????????????????????????GTTCTCTTCTGACCG-ACC-----------TTTTGTTGCAT----GTGCTT-ATGCTGTG-------CTTCCCTTTTACACCCCCCCCCCCCCCTCTTCTTTCTT----AATGTTTT--------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTCCGCTT-GAAAATATATTCAATTTTTT-------------------------------ATTGTGTTGTTTT-ATTCTGTGATACGAAATATTCAATCTAT-CATTTCTTTTGAGAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CCCGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTAATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTGCTGG--------TTCAACTT-CCCC--ATCCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAA--GGAAGATGAAAAAA----CGCTTAGGTGACAATTTGCTTGTATGTATTGAGATCGTTTGAAAA-TAT-TCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGGCTCAGTAGTGGTCAATTGAACT?????????????????????????????????????????????????????????????????????????? Silene_aprica_6271_04306 ATTGAGTGTATTATGGGCAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACGGATGTCACTGTAAGTTCTCTTTTGATCG-ACCGACC-------TTTTGTTGCAGTTTGGTGCTT-ATGTTGTG--------------------------CCCCCCCCTTCTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCACTTTTTT-------------------------------ATTGT---GTTTT-ATTTTGTGATACGAAATATTCAATAGAT-CATTTCTTTTGAAAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTT------ATA--CGGGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGCTGATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGATTGATTGCCGC--------TTCAACTTGCCCCATATCCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GGAAGATGAAAAAA----CGCGTAGGTAA-AATTTGCTTGTATGTATTTATATCGTGTGAAAA-TATGACACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTTGTCAATTGAATTCCTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_conica_E_02309 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTCTGATCG-ACCTTC--------TTTTGTTGCAT----GTGCTT-ATGCTGTG-------CTTCCCTTTTA---------CCCTCCCTCTTTTTTCTT----AATGTTTT--------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCCT-GAAAATATATTCAATTTTTT-------------------------------ATTGTGTTGTTTT-ATTCTGTGATACGAAATATTCAATATAT-CATTTCTTTTGAGACGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGCGGG-------AAAGATGGAAATAG---------TTTGGTAGA----CGAGTTAACTAATTGTGTTT-GAGATTGAGGGCGT--------GAGTATGATTGGTTGCTGG--------TTCAACTT-CCC--TATCCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GGAAGATGAAAAAA----CGCGTAGGTGACAATTTGCTTGTATGTATTGAGATCGTTTGAAAA-TAT-TCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGGCTCAGTAGTGGTCGATTGAACTCTCCGGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGTTATCAGATGCGTGGTTTTG Silene_coniflora_S_04308 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTCTGATCG-ACCTTC--------TTTTGTTGCAT----ATGCTT-ATGGGGTG-------CTTCCCTTTTA---------CCCTCCCTCTTCTTTCTT----AATGTTTT--------------------------------------------------------------------GTC-TAATGAGAC-ATCTTTTCGCTTTGAAAATATATTCAATTTTTT-------------------------------ATTGT---GTTTT-ATTCTGTGATACCAAATATTCAATATAT-CATTTCTTTTGAGGAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGCGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTAATTAATTGTGTTT-GAGATTGAGGACCT--------GAGTATGAT-------CAG--------TTCAACTT-CTCC--ATCCCTTGTATTTT----AAAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAAAGGAAGATGAAAAAA----CGCGTAGGTGACAATTTGCTTGTATGTATTGATATCGTTTGAAAA-TATTTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGGCTCAGTAGTGGTCAATTGAACTCTCCGGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTACAGAAATGTGGTTATCAGATGCGTGGTTTTG Silene_conoidea_12655_02089 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTCTGATCG-ACCTTC--------TTTTGTTGCAT----GTGCTT-ATGGCGTG-------CTTCCCTTTTA---------CCCTCCCTCTTCTTTCTT----AATGTTTT--------------------------------------------------------------------GTC-TAATGAGAC-ATCTTTTCGCTTTGAAAATATATTCAATTTTTT-------------------------------ATTGT---GTTTT-ATTCTGTGATGCCAAATATTCAATATAT-CATTTCTTTTGAGAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGCGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTCAA----------------------------------------------------------------------------------------------------------------------------TTAAAAA-GGAAGATGAAAAAA----CGCGTAGGTGACAATTTGCTTGTATGTATTGATATCGTTTGAAAA-TATTTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGGCTCAGTAGTGGTCAATTGAACTCTCCGGGTTTGTT-TATAGGTGGACAATATCAGCAAGGCTCTTCAGAAATGTGGTTATCAGATGCGTGGTTTTG Silene_davidii_13374_02594 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACGGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGTTGTG--------------------------CCTCCCCCCCCTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGACTATCTTTTCGCTT-GAAAATATATTCACTTTTTT-------------------------------ATTGT---GTTTT-ATTTTGTGATACGAAATATTCAATAGAT-CATTTCTTTTGAAAAGAGCTGGTAC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGGGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGCTGATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTGCCGG--------TTCAACTTGCCCC-TATCCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GGAAGATGAAAAAA----CGCGTAGGTAACAATTTGCTTGTATGTATTTATATCGTGTGAAAA-TATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTTGTCAATTGAATTCCTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTT??????????????????????????????? Silene_diclinis_DIC_7_02829 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACCCCATTCACTGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTCTTC-----TTTTGTTGCAGTTTGGTGCTT-ATGGTGTGCAGTGTGCTTCCCTTTCGCA----------CCCCTCTTCTTTCTTT---AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTTT------------------------------GTTGT---GTTTT-ATTCTGTGATACAAAATATTCAATATTT-CATTTCGCTTGAAAA--------------------------------------------TATAATATTTT-----ATA--CGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATGAATTGCGTTT-GAGATTGAGGGCCT--------GGGTATGATTGGTTACCGG--------TTCAACTT-CCCC-TATCCCTTTTATTTT----ATAGGCCTTTCCCC--TCTTAGCAAACCATAAAAAA-GGAAGAAGAAAAAA----TGTGTAGGTGACAATTTGCTTGTAT-----TATATCGTGTGAAAA-AATGTCACCTTAATAAAGATTGAGGGCCTGGGTATGATTGGTTGCCGGTTCAACTTCCCCTATCCCTTTTATTTTATAGGCCTTTCCCCTCTTAGCAAACCATAAAAAAGGAAGAAGAAAAAATGTGTAGGTGACAATTTGCTTGTATTATATCGTGTGAAAAAATGTCACCTTAATAAAAGGCTTAGTATTGGTCAATTGAATTCTTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_dioica_D184_24_a02827 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACCCCATTCACTGATGTCACTGTAAGTTCTCTTTTGATCTCACCTTCTTC-----TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCGCA----------CCCCTCTTCTTTCTTT---AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTTT------------------------------GTTGT---GTTTT-ATTCTGTGATACAAAATATTCAATATTT-CATTTCGCTTGAAAA--------------------------------------------TATAATATTTT-----ATA--CGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATGAATTGCGTTT-GAGATTGAGGGCCT--------GGGTATGATTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTTTATTTT----ATAGGCCTTTCCCC--TCTTAGCAAACCATAAAAAA-GGAAGAAGAAAAAA----TGTGTAGGTGACA-TTTGCTTGTAT-----TATATAGTGTGAAAA-AATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAAGCTTAGTAGTGGTCAATTGAATTCTTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_dioica_D184_24_g04587 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACCCCATTCACTGATGTCACTGTAAGTTCTCTTTTGATCTCACCTTCTTC-----TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCGCA----------CCCCTCTTCTTTCTTT---AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTTT------------------------------GTTGT---GTTTT-ATTCTGTGATACAAAATATTCAATATTT-CATTTCGCTTGAAAA--------------------------------------------TATAATATTTT-----ATA--CGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATGAATTGCGTTT-GAGATTGAGGGCCT--------GGGTATGATTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTTTATTTT----ATAGGCCTTTCCCC--TCTTAGCAAACCATAAAAAA-GGAAGAAGAAAAAA----TGTGTAGGTGACA-TTTGCTTGTAT-----TATATAGTGTGAAAA-AATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTTAGTAGTGGTCAATTGAATTCTTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_fruticosa_1064_FJ376914 ????????????????????????????????TGTGGGTAAGGAAGGAGACGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTTTGATAG-TCC-----------TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTCCCCTTTCA------------CCCCCCCTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATG--TC-ATCTTTTCGCTT-GAAAATATGTTCACTTTTTTT------------------------------ATTGTGTTGTTTT-ATTCTGTGATACAACATATTCAATAGAT-CATTTCTTTTGAGAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTT------ATA--CGCTGG-------AAAGTTGGAAATAG---------TTTGTTAGA--CGCGAGTTGATTAATTGTGTTT-GAGATTGAGGGCTC--------GAGTATGATTGGTTGCCTG--------TTCA-TTT-CCCC-TATC-----------------AG-CCTTGCGCC--TCTTAGCAAACCATAAAAAA-GCAAGATGAAAAAA----CGCGTAGGTGACAATTTGCTTGTATGTATTTATATCGTGTGAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTGG--------------CTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGA???????????? Silene_heuffelii_H4_6_c02837 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACCCCATTCACTGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTCTTTTCATCTTTTGTTGCAGTTTGGTGCTT-ATGGCGTG-------CTTCCCTTTCACA----------CCCCTCTTCTTTCTT----AATGTTTTC-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTT-------------------------------ATTGTGTTGTTTT-ATTCTGTGATACAAAATATTCAATATTT-CATTTCTTCTGTGAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATATAATATTTT-----ATATATGCTGG-------AAAGATGGAAATAG---------TTTGTCAGA----CGAGTTGATGAATTGCGTTT-GAGATTGAGGGCCT--------GGGTATGATTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTTTATTTT----ACAGGCCTTTCCCC--TCTTAGCAAACCATAAAAAA-GGAAGAAGAAAAAA----CGTGTAGGTGACAATTTGCTTGTATTTATTTATATCGTGCGAAAA-AATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTTTATAGTGGTCAATTGAATTCTCCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_heuffelii_H4_6_t04589 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACCCCATTCACTGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTCTTTTCATCTTTTGTTGCAGTTTGGTGCTT-ATGGCGTG-------CTTCCCTTTCACA----------CCCCTCTTCTTTCTT----AATGTTTTC-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTT-------------------------------ATTGTGTTGTTTT-ATTCTGTGATACAAAATATTCAATATTT-CATTTCTTCTGTGAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATATAATATTTT-----ATATATGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATGAATTGCGTTT-GAGATTGAGGGCCT--------GGGTATGATTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTTTATTTT----ACAGGCCTTTCCCC--TCTTAGCAAACCATAAAAAA-GGAAGAAGAAAAAA----CGTGTAGGTGACAATTTGCTTGTATTTATTTATATCGTGCGAAAA-AATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTTTATAGTGGTCAATTGAATTCTCCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_integripetala_BOx2877_02312 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCATTCACTGATGTCACTGTAAGTTCTCTTTTGACTG-ACCCTC--------TGTTATTGCAGTTGGGTGCTT-ATGGTGTG-------CTTCCCTTTCA-----------TACCCTCTTCTTTCTT----AATGTTATT-------------------------------------------------------------------GTCCTGATGAGAC-ATTTTTCCACTG-GAAAATATATTCAATTTTTTT------------------------------ATTGT---GTTTT-ATTCAGTGATACAAAATATTCAGTGTTT-CCTTTCTTTTGGGAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATGTTTT-----ATA--TGCTGG-------AAAAATGGAAATAG---------TTTGTTAGA----CGAGTTGGTGGAACGCGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTGCCGCCTTGCCGATTCAACTT-CCCG-TATCCCTTTTATTTTATTTATAGGCCTTGCCAC--CTTCACCAAACCATAAAAA--GGAAGAAGAAAAAA----CGCTTAAGTGACAATTTGCTTGTATGTATTTATATTGTGTGAAAA-AATGTCACCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTGGTTGTCAATTGAATTCTCCTGGCTTGTT-TATAGGTGGACAATATCAGCAA?????????????????????????????????????? Silene_latifolia_L121_9_03131 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACCCCATTCACTGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCGCA----------CCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTTT------------------------------GTTGTGTTGTTTT-ATTCTGTGATACAAAATATTCAACATTT-CATTTCGCTTGAAAA--------------------------------------------TATAATATTTTATTTTATA--CGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATGAATTGCGTTT-GAGATTGAGGGCCT--------GGGTATGATTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTTTATTTT----ATAGGCCTTTCCCC--TCTTAGCAAACCATAAAAAA-GGAAGAAGAAAAAA----TGTGTAGGTGACAATTTGCTTGTAT-----TATATCGTGTGAAAAAAATGTCACCTCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTTAGTAGTGGTCAATTGAATTCTTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_latifolia_L170_10_02835 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACCCCATTCACTGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCGCA----------CCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTTT------------------------------GTTGTGTTGTTTT-ATTCTGTGATACAAAATATTCAATATTT-CATTTCGCTTGAAAA--------------------------------------------TATAATATTTT-----ATA--CGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATGAATTGCGTTT-GAGATTGAGGGCCT--------GGGTATGATTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTTTATTTT----ATAGGCCTTTCCCC--TCTTAGCAAATCATAAAAAA-GGAAGAAGAAAAAA----TGTGTAGGTGACAATTTGCTTGTAT-----TATATCGTGTGAAAAAAATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTTAGTAGTGGTCAATTGAATTCTTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_latifolia_L200_2_03137 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACCCCATTCACTGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCGCA----------CCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTTT------------------------------GTTGTGTTGTTTT-ATTCTGTGATACAAAATATTCAATATTT-CATTTCGCTTGAAAA--------------------------------------------TATAATATTTT-----ATA--CGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATGAATTGCGTTT-GAGATTGAGGGCCT--------GGGTATGATTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTTTATTTT----ATAGGCCTTTCCCC--TCTTAGCAAACCATAAAAAA-GGAAGAAGAAAAAA----TGTGTAGGTGACAATTTGCTTGTAT-----TATATCGTGTGAAAAAAATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTTAGTAGTGGTCAATTGAATTCTTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_latifolia_L81_9_03130 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACCCCATTCACTGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCGCA----------CCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTTT------------------------------GTTGTGTTGTTTT-ATTCTGTGATACAAAATATTCAATATTT-CATTTCGCTTGAAAA--------------------------------------------TATAATATTTT-----ATA--CGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATGAATTGCGTTT-GAGATTGAGGGCCT--------GGGTATGATTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTTTATTTT----ATAGGCCTTTCCCC--TCTTAGCAAACCATAAAAAA-GGAAGAAGAAAAAA----TGTGTAGGTGACAATTTGCTTGTAT-----TATATCGTGTGAAAAAAATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTTAGTAGTGGTCAATTGAATTCTTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_littorea_2395_02630 ????????????????????????????????????????????????????????????????????????????????TTTTCTTTTGATCG-ACCTTC--------TTTTGTTGTAGTTTGGTGCTTTATGGTGTG-------CTTCCCTTTCG---CCCCCGGATCCCCTCTCCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCGT-GAAAATATATTCAAATTTTT-------------------------------ATGGKGTGGTTTT-ATTTTGTGATAC-AAATATTCAATATTT-CATCTTTTTTGAGAAGAGCTGGTGC-----ATAAA------TTTCTTTTGGGTGCTGGCTAGAATATTTT-----ATA--CTTGGGAATTCGGAAAAATGGAAACAGTTTGTTTACTTTGTTAGA----CGTG--------TAGTGTTT-GAGACTGAGGGCCT--------GAGTATGATTGGTTGCCGG--------TTMAACTT-CTCC-TATCCCTTGTATTTT----ATAGGCCTTGTGCC--TCTTAGTAAACCATAAAAAA-------------------CGTGTAGGTGACAATTTG----TATRTGTTTGTATCGTGTGAAAA-TGTGTCACCATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGTCTCACTAG???????????????????????????????????????????????????????????????????????????????????????? Silene_littorea_2395_02631 ????????????????????????????????????????????????????????????????????????????????TTTTCTTTTGATCG-ACCTTC--------TTTTGTTGTAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCG---CCCCCGGATCCCCTCTCTTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCGT-GAAAATATATTCAAAATTTT-------------------------------ATTGKGTTGTTTT-ATTCTGTGATAC-AAATATTCAATATTT-CATCTTTTTTGAGAAGAGCTGGTGC-----ATAAA------TTTCTTTTGGGTGCTAGCTAGAATATTTT-----ATA--CTCTGGAATTCTGGAAGATGGAAACAGTTTGTTTACTTTGTTAGA----CGTG--------TAGTGTTT-GAGACTGAGGGCCT--------GTGTATGATTGGTTGCCGG--------TTMAACTT-CTCC-TATCCCTTGTATTTT----ATAGGCCTTGTGCC--TCTTAGTAAACCATAAAAAA-------------------CGTGTAGGTGACAATTTG----TATRTGTTTGTATCGTGTGAAAA-TGTGTCACCATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGTCTCACTAG???????????????????????????????????????????????????????????????????????????????????????? Silene_lydia_L_04362 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGCAAGGAAGGAGACGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTCTGATCG-ACCTTC--------TTTTGTTGCAT----GTGCTT-ATGGTGTG-------TTTCCCTTTTAT---------CCTCCCTCTTCTTTATT----AATGTTTT--------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTT-------------------------------ATTGTGTTGTTTT-ATTCTGTGATACGAAATATTCAATATAT-CATTTCTTTTGAGAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTT------ATA--CGCGGA-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTAATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTGCTGC--------TTCAACTT-CCCC--ATCCCTTGTATTTT----ATAGGCCTTGTGCC--TCTTAGCAAACCATAGAAAA-GGAAGATGAAAAAA----TGCGTAGGTGACAATTTGC---TATGC-TTGATATCCCTTGAAAA-TATTTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGGCTCAGTAGTGGTCAATTGAACTCTCCAAGCTTGTT-TATAGGTTGACAATATCAGCAAGGCCCTTCAGAAATGTGGTTATCAGATGCGTGGTTTTG Silene_lydia_S_04315 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGCAAGGAAGGAGACGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTCTGATCG-ACCTTC--------TTTTGTTGCAT----GTGCTT-ATGGTGTG-------TTTCCCTTTTAT---------CCTCCCTCTTCTTTATT----AATGTTTT--------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTT-------------------------------ATTGTGTTGTTTT-ATTCTGTGATACGAAATATTCAATATAT-CATTTCTTTTGAGAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTT------ATA--CGCGGA-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTAATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTGCTGC--------TTCAACTT-CCCC--ATCCCTTGTATTTT----ATAGGCCTTGTGCC--TCTTAGCAAACCATAGAAAA-GGAAGATGAAAAAA----TGCGTAGGTGACAATTTGC---TATGC-TTGATATCCCTTGAAAA-TATTTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGGCTCAGTAGTGGTCAATTGAACTCTCCAAGCTTGTT-TATAGGTTGACAATATCAGCAAGGCCCTTCAGAAATGTGGTTATCAGATGCGTGGTTTTG Silene_macrodonta_13984_03120 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGATGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTCTGATCG-ACCTTC--------TTTTGTTGCAT----GTGCTT-ATGCTGTG-------CTTCCCTTTTA---------CCCTCCCTCTTCTTTCTT----AATGTTTT--------------------------------------------------------------------GTCCTGATGAGGC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTT-------------------------------ATCGTGTTGTTTT-ATTCTGTGATACGAAATATTCAATATAT-CATTTCTTTTGAGAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGCGGG-------AAAGATGGAAATAG---------TTCGTTAGA----CGAGTTAATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTTCTGG--------TTCAACTT-CCCC--ATCCCTTGTATTTT----ATAGGCCTCGCGCT--TCTTAGCAGACCATAAAAAAAGGAAGATGAAAAAC----CGCGTAGGTGACAATTTGCTTGTATGTATTGAGATCGTTTGAAAA-TAT-TCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGGCTCAGTAGTGGTCACTTGAACTCTCCGGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGTTATCAGATGCGTGGTTTTG Silene_marizii_M4_1_02840 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACCCCATTCACTGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTCTTC-----TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCGCA----------CCCCTCTTCTTTCTTT---AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCAATTTTTTT------------------------------GTTGT---GTTTT-ATTCTGTGATACAAAATATTCAATATTT-CATTTCGCTTGAAAA--------------------------------------------TATAATATTTT-----ATA--CGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATGAATTGCGTTT-GAGATTGAGGGCCT--------GGGTATGATTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTTTATTTT----ATAGGCCTTTCCCC--TCTTAGCAAACCATAAAAAA-GGAGGAAGAAAAAA----TGTGTAGGTGACAATTTGCTTGTAT-----TATATAGTGTGAAAA-AATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTTAGTAGTGGTCAATTGAATTCTTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_multinervia_P_01446 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGATGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCA---------CCCCCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GCCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCACTTTTTTATTTTT-------------------------ATTGTGTTGTTTT-ATTCTGTGATACGAAGTATTCAATAGAT-CATTTCTTTTGAGAGGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--TGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATTAATTGTGTT--GAGATAGAGGGCCT--------GAGTAT---TGGTTACCTG--------TTCAACTT-CCC--TATTCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GAAAGATGAAAAAA----CGCGTAGGTGACAATTTGCTTCTATGTATTTATATCGTGTGAAAA-TATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTGGTCAATTGAATTCTCCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_multinervia_R_04363 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGATGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCA---------CCCCCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GCCCTGATGAGAC-ATCTTTTCGCTT-GAAAGTATATTCACTTTTTTATTTTT-------------------------ATTGTGTTGTTTT-ATTCTGTGATACGAAGTATTCAATAGAT-CATTTCTTTTGAGAGGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--TGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATTAATTGTGTT--GAGATAGAGGGCCT--------GAGTAT---TGGTTACCTG--------TTCAACTT-CCC--TATTCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GAAAGATGAAAAAA----CGCGTAGGTGACAATTTGCTTCTATGTATTTATATCGTGTGAAAA-TATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTGGTCAATTGAATTCTCCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_multinervia_S_02944 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGATGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCA---------CCCCCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GCCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCACTTTTTTATTTTT-------------------------ATTGTGTTGTTTT-ATTCTGTGATACGAAGTATTCAATAGAT-CATTTCTTTTGAGAGGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--TGCTGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATTAATTGTGTT--GAGATAGAGGGCCT--------GAGTAT---TGGTTACCTG--------TTCAACTT-CCC--TATTCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GAAAGATGAAAAAA----CGCGTAGGTGACAATTTGCTTCTATGTATTTATATCGTGTGAAAA-TATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTGGTCAATTGAATTCTCCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_nigrescens_KGB217_00644 ??????????????????????????????????????????????????????ACACCTTTCACGGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGTTGTG-------CTTCCCTTTCA----------CCCCCCTCTTGTTTCTT----ACTGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCACATTTTT-------------------------------ATTGTGGTGTTTT-ATTTTGTGATACGAAATATTCAATAGAT-CATTTCTTTTGAAAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGGGGG-------AAAGATAGAAATAG---------TTTGTTAGA----CGAGCTGATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGACTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTGTATTTT----ATAGGCCCTGCGCC--TCTTAGCAAACCATAAAAAA-GGAAGATGAAAAAA----TGCGTAGATAACAATTTGCTTGTATGTATTTATATCGTGTGAAAA-TATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTTGTCAATTGAATTCCTCTGGCTTGTT-TATAGGTGGACAATATCAGCTATGCCCTT??????????????????????????????? Silene_noctiflora_O_00278 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGATGCTACACCGTTCACTGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTTCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCA----------CCCTTCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTTGCTT-GAAAATTTATTCACTTTTGT-------------------------------ATTGTGTTGTTTT-ATCCTGTGATACGAAATATTCAATAGAT-CATCTCTTTTGAGAAGAGCTGGTGT-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGCGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTGCCAG--------TTCAACTT-CCCC--ATCCCTTGTACTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GGAA-----------------------------------CTATGTATTTATATCGGGTGAAAA-TATTTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTGGTCAATTGAATTCTCCCGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCT???????????????????????????????? Silene_noctiflora_P_04110 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGATGCTACACCGTTCACTGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTTCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCA----------CCCTTCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTTGCTT-GAAAATTTATTCACTTTTGT-------------------------------ATTGTGTTGTTTT-ATCCTGTGATACGAAATATTCAATAGAT-CATCTCTTTTGAGAAGAGCTGGTGT-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGCGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTGCCAG--------TTCAACTT-CCCC--ATCCCTTGTACTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GGAA-----------------------------------CTATGTATTTATATCGGGTGAAAA-TATTTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTGGTCAATTGAATTCTCCCGGCTTGTT-TA?????????????????????????????????????????????????????????? Silene_pendula_12654_2088 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACCGATGTCACTGTAAGTTCTGTTTTGATCG-TCCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGGCGTG-------CTTCCCTTACA----------GCCCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGCTGAGAT-ATCTTTTCGCTT-GAAAATATATTCACTTTTTT-------------------------------GTTGT---GTTTTTATTGGGTGATA---------------------------------------------------------------------------GATAGAATATTTT-----ATA--CTCGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTGCCGG--------TTCAACTT-CCCC--ATCCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GGAAGATGAAAAAA----CGCCTAGGTGACAATTTGCTTGTATGTATTTATGTCGTGTGAAAA-TATTTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAATAGTGGTCAATTGAATTCTCCCGGCTTGTT-TATAGGTGGACAATATTAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_pseudoatocion_7821_ ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGATGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTTTGATAG-TCC-----------TTTTGTTGCAGTTTGGT----------GTG-------CTTCGCTTTCA-----------CCCCCTCTTCTTTCTT----AATATTTTTT------------------------------------------------------------------GTCCTGATG--TC-ATCTTTTCGCTT-GAAAGTATATTCACTTTTTT-------------------------------ATTGTGTTGTTTA-TTTGTGTGATACAAAATATTCAATAGAT-CATTTCTTTTGAGAAGAGCTAGTGC-----ATAAG------TTTCTTTTGGGCGCTAGATAGAATATTT------ATA--CACCGG-------AAAGTTGGAAATAG---------TTTGTTAAA--CGCGAGTTGATTAATTGTGTTTTGAGATTGAGGGCTC--------GAGTATGATTGGTTGCCTG--------TTCA-TTT-CCCC-TATCTCTTGTATTTT----ATAGGCCTTGCGAC--TCTTAGCAAACCATAAAAAA-GCAAGATGAAAAAA----CGAGTAGGTGGCAATTTGCTTGTATGTATTT-TATCTCGCGTGAA------------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAATGGTCAATTCAATTTTCTGGGCTTGTT-TATAGGTGGACAATATCAGTAAG????????????????????????????????????? Silene_samia_13410_00185 ??????????????????????????????????????????????????????ACGCCTTTCACCGATGTCACTGTAAGTTCTCTTTTGATTG-ACCTTC--------TTTTGTTTCAGTTTGGGGCTT-ATGGTCTG-------CTTCCCTTTCA-----------CCCCCTCTTCTTTCTT----AATGTTTTTGTTCTGATCTTATCCACAAGTCATCCCCGTATTTTGCCACATACATGTACATGGGTTCGGTGAATCGGTCCTG--GAGAC-ATCTTTTCGCTT-GAAAATATATTCACTTTTTT-------------------------------GTTTTGTTGTTTT-ATTCTGTGATATGAAATATTCAATAGAT-CATTTCTTTTGAGAAGAGCTGGTGC-----ATAAA------TTTCTTTTGGGTGCTAGACAGAATATTTATTTTAATA--AGCGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATTAATTGTGTTT-GAGATTGAGGTCCC--------GAGTCTGATTGGTTGCCGG--------TTCAACTT-CCCC--ACCCCTTGTATTTTT---ATAGG-CTTACGCC--TCTTAGCAAAC-ATAAAAAA-GGAAGATGAAAAAA----CGCGTAGGTGACAATTTGCTTGTATGTATTTATATCGTGTGAAAA-TATTTCACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTAGCGGTCAACTGAATTATCCCGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTT??????????????????????????????? Silene_schafta_7615_AJ634088 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTTTGGTAG-TCC-----------TTTTGTTGCAGTTTGGTGGTT-ATGGTGTG-------CTTCCCTTTCA----------CCCCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATG--TC-ATCTTTTTGCTT-GAAAATATATTCACTTTTTTT------------------------------ATTGTGTTGTTTT-ATTCTGTGATACAAGATATTCAATAGAT--ATTTCTTTTGAGAAGAGCTGGTGC----ACAAAG------TTTCTTTTGGGTGCTAGATAGAATATTT------ATA--CACTGG-------AAAGTTGGAAATAG---------TTTGTTAGA--CGCGAGTTGATTAATTGTGTGT-GAGATTGAGGGCAC--------GAGTATGATTGGTTGCCTG--------TTCA-TTT-CCCG-TATCTCTTGTATTTT----ATAGGCCTTGTGCC--TCTTAGCAAACCATAAAAAA-GCAAGATGAAAAAA----CGCGTAGGTGACAATTTGCTTGTATGTATTTATATCGTGTGAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTGGTCAATTCAATTCTCCTGGCTTGTTATATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCA?????????????? Silene_stellata_6374_00188 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACGGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTT--------TTTTGTTGCAGTTTGGTGCTT-ATGTTGTG-----------------------------CCCCCCCCTCTCTCTT----AATGTTTTTT------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTTACTTTTTT-------------------------------ATTGT---GTTTT-ATTTTGTG-TACGAAATATTCAATAGAT-CATTTCTTTTGAAAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGGGGG-------AAAGATGGAAATAG---------TTTGTTAGA----TGAGCTGATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTGCCGT--------TTCAACTTGCCCG-TATCCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GGAAGATGAAAAAA----CGCGGAGGTAACAATTTGCTTTTATGTATTTATATCGTGTGAAAA-TATGTCGCCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTTGTCAATTGAATTCCTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_stellata_6374_00193 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACGGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGTTGTG----------------------CCCCCCCCCCCCCTCTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCACTTTTTT---------------------------------------------ATTTTGTGATACGAAATATT---------------------------------------ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGGGGG-------AAAGATGGAAATAA---------TTTGTTAGA----CGAGCTGATTAATTGGGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTGCCGG--------TTCAACTTGCCCC-TATCCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GGATGATGAAAAAA----CGCGTTGGTAACAATTTGCTTGTATGTATTTATATCGTGTGAAAA-TATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTTGTCAATTGAATTCCTCTGGCTTGTT-TATAGGTGRACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGATTTG Silene_subconica_1033_03493 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACCGATGTCACTGTAAGTTCTCTTCTGATCG-ACCTTC--------TTTTGTTGCAT----GTGCTT-ATGCTGTG-------CTTCCCTTTTA---------CCCTCCCTCTTTTTTCTT----AATGTTTT--------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCCT-GAAAATATATTCAATTTTTT-------------------------------ATTGTGTTGTTTT-ATTCTGTGATACGAAATATTCAATATAT-CATTTCTTTTGAGAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGCGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTAACTAATTGTGTTT-GAGATTGAGGGCAT--------GAGTATGATTGGTTGCTGG--------TTCAACTT-CCC--TATCCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GGAAGATGAAAAAA----CGCGTAGGTGACAATTTTCTTGTATGTATTGAGATCGTTTGAAAA-TAT-TCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGGCTCAGTAGTGGTCAATTGAACTCTCCGGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGTTATCAGATGCGTGGTTTTG Silene_turkestanica_12484_03157 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGATGCTACACCGTTCACCGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTTCAGTTTGGTGCTT-ATGGTGTG-------CTTCCCTTTCA----------CCCATCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAA-------------------TTTATTCACTTTTGT-------------------------------ATTGTGTTGTTTT-ATCCTGTGATACGAAATATTCAATAGAT-CATCTCTTTTGAGAAGAGCTGGTGT-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGCGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGATTGGTTGCCAG--------TTCAACTT-CCCC--ATCCCTTGTACTTT----ATAGGCCTTCCGCC--TCTTAGCAAACCATAAAAAA-GGAA-----------------------------------CTATGTATTTATATCGGGCGAAAA-TATTTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTGGTCAATTGAATTCTCCCGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_uniflora_7827_02316 ATTGAGTGTATTATGGGTAAA?????????????????????????????????ACACCTTTCWMCGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTTCAGTTTGGTGCTT-ATGGTCTG-------CTTCCCTTTCA-----------CCCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTTGCTT-GAAAA--TATTCACTTTTTT-------------------------------ATTGTGTTGTTTT-ATTCTGTGATCCGAAATATTCAATAGAT-CATTTCTTTTGAGAAGAGCTGGTGC-----ATAAG------TTTCTTTTGCTTGCTAGACAGAATATTTT-----ATA--CACGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTGATTAATTGTGTTT-GAGATTGAGGTCCC--------GAGTATGATTGGTTGCCGG--------TTCAACTT-CCCC--ATCCCTTGTACTTT----ATAGGACT-ACGCC--TCTTAGCAAACCATAAAAAA-AGAAGACGAAAAAA----CGCGTAGGTGACAATTTCCTTGTATGTATTTATATCGTGTGAGAA-TATTTCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAGCAGTGGTAAATTGAATTCTCCCGGCTTGTT-TATAGGTGGACAATATCAG????????????????????????????????????????? Silene_viscosa_2498_225 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TCTTGTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAA-ATCTTTTCGTTT-CAAAATATATTCAATTTTTT-------------------------------ATTGT---GTTTT-ATTTTGTGATACGAAATATTCAATAGAT-CATTTCTTTTGAAAAGAGCTGGTGG-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----GTA--AGGGGG-------AAAGATAGAAATAG---------TTTGTTAGA----CGAGCTGATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGACTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATGAAAAG-GGAAGATAAAAAAA----TGTGTAGATAACAATTTGCTTGTATGTATTTATATCGTGTGAAAA-TATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGT---CAATTGAATTCCTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGG????? Silene_viscosa_2498_226 ???????????????????????????GCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACGGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTCTGTTGCAGTTTGGTGCTT-ATGTTGTG-------CTTCCCTTTCA----------CCCCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTTCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCACTTTTTT-------------------------------ATTGTGTTGTTTTTATGTTGTGATACGAAATATTCAATAGAT-CATTTCTTTTGAAAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGGGGGG------AAAGATGGAAATAG---------TTTGTTAGA----TGAGCTGATTAATTGGGTT--GAGATTGAGGGCCT--------GAGTATGATTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GGAAGATGAAAAAA----CGCCTAGGTAACAATTTGCTTGTATGTATTTATATCGTGTGAAAA-TATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTTGTCAATTGAATTCCTCTGGCTTGTT-TTTAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGG????? Silene_viscosa_7705_02155 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACGGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTCTGTTGCAGTTTGGTGCTT-ATGTTGTG-------CTTCCCTTTCA----------CCCCCCTCTTCTTTCTT----AATGTTTTT-------------------------------------------------------------------GTTCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCACTTTTTT-------------------------------ATTGTGTTGTTTTTATGTTGTGATACGAAATATTCAATAGAT-CATTTCTTTTGAAAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--CGGGGGG------AAAGATGGAAATAG---------TTTGTTAGA----TGAGCTGATTAATTGGGTT--GAGATTGAGGGCCT--------GAGTATGATTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTGTATTTT----ATAGGCCTTGCGCC--TCTTAGCAAACCATAAAAAA-GGAAGATGAAAAAA----CGCCTAGGTAACAATTTGCTTGTATGTATTTATATCGTGTGAAAA-TATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTTGTCAATTGAATTCCTCTGGCTTGTT-TTTAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG Silene_vulgaris_6459_00869 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGATGCTACACCTTTCAC?GATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTTCAGTTTGGTGCTT-ATGGTCTG-------CTTCCCTTTCA-----------CCCCCTCTTCTTTYTT----AATGTTTTT-------------------------------------------------------------------GTCCTGA?GAGAC-ATCTTTTTGCTT-GAAAA--TATTCACTTTTTT-------------------------------ATTGTGTTGTTTT-ATTCTGTGATCCGAAATATTCAATAGAT-CATTTCTTTTGAGAAGAGCTGGTGC-----ATAAG------TTTCTTTTKS?TGCTAGACAGAATATTTT-----ATA--CACGGG-------AAAGATGGAAATAG---------TTTGTTAGA----CGAGTTG?TTAATTGTGTTT-GAGATTGAGGTCCT--------GAGTATGATTGGTTGCCGG--------TTCAAYTT-CCCC--ATCCCTTGTACTTT----ATAGGACT-ACGCC--TCTTAGCAAACCATAAAAAA-AGAAGACGAAAAAA----CGCGTAGGTGACAATTTGCTTGTATGTATTTATATCGYGTGAGAA-TATTTCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAGCAGTGGTAAATTGAATTCTCCCGGCTTGTT-TATAGGTGGACAATATCA?????????????????????????????????????????? Silene_zawadzkii_2447_02317 ATTGAGTGTATTATGGGTAAAGTTGCTGCTCATGTGGGTAAGGAAGGAGACGCTACACCTTTCACGGATGTCACTGTAAGTTCTCTTTTGATCG-ACCTTC--------TTTTGTTGCAGTTTGGTGCTT-ATGTTGTG-------CTTCCCTTTCA--------CCCCCCCCTCTTGTTTCTT----AATGTTTTT-------------------------------------------------------------------GTCCTGATGAGAC-ATCTTTTCGCTT-GAAAATATATTCACTTTTTTT------------------------------ATTGT---GTTTT-ATTTTGTGATACGAAATATTCAATAGAT-CATTTCTTTTGAAAAGAGCTGGTGC-----ATAAG------TTTCTTTTGGGTGCTAGATAGAATATTTT-----ATA--GGGGGG-------AAAGATAGAAATAG---------TTTGTTAGA----CGAGCTGATTAATTGTGTTT-GAGATTGAGGGCCT--------GAGTATGACTGGTTGCCGG--------TTCAACTT-CCCC-TATCCCTTGTATTTT----ATAGG-CTTGCGCC--TCTTAGCAAACCATAAAAAA-GGAAGATGAAAAAA----TGCGTAGATAACAATTTGCTTGTATGTATTTATATCGTGTGAAAA-TATGTCACCTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGCTCAGTAGTTGTCAATTGAATTCCTCTGGCTTGTT-TATAGGTGGACAATATCAGCAAGGCCCTTCAGAAATGTGGGTATCAGATGCGTGGTTTTG ; END; BEGIN CHARACTERS; TITLE RPB2_indels; DIMENSIONS NCHAR=128; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1"; MATRIX Eudianthe_laeta_1341_FJ376888 0101??001001?000?100???????1??001???0001010?10?0?011010????0???1000011?1?10001100001010100?1?0001001000001???0000001100000011000 Lychnis_coronaria_7494_00216 0101??0011??????????????????????001?0001011?10?0?001000000001?10001011?1?1000100001?000?1010?10010000101?00000000000100000010001 Lychnis_floscuculi_AJ634070_00236 1101??0010001000??10?00000000001001?000101000001?001000001000?111011?1?1?1000110001?01010010?00010000000100000000000100000010001 Lychnis_floscuculi_AJ634071_00237 1101??0010001000???1??0000000001001?000101000001?001000001000?111011?1?1?1000110001?01010010?00010000000100000000000100000010001 Lychnis_flosjovis_7566_00204 0101??00100000001000?1000000001?001?0001011?10?0?1?1000000000?11001011?1?1000100001?000?1010?10010010101?00000000000100000010001 Petrocoptis_pyrenaica_2486_AJ634073 0101??00101??000?000?????100?01?001?0001010100000001000001000?11001011?100000111001?010100?1?00000010101?01??0000?1?100000010001 Petrocoptis_pyrenaica_2875_FJ376911 0101??00101??000?000?????100?01?001?0001010100000001000001000?11001011?100000110101?010100?1?00000010101?01??0001?00100000010001 Silene_ammophila_12639_03345 011???1010001000?00000000000001?01??0001010?10?0?001000001000?11001011?1?1000110001?010?1010?000101?0001?000000000001001000100?? Silene_aprica_6271_04306 01001?001000??10???????00000001?001?0001010?10?0?1?1000001000?1101?011?1?1000110001?00000010?00010010001?00100000000100000010001 Silene_conica_E_02309 0101??1010001000?000???10000001?01??0001010?10?0?001000001000?11001011?1?1000110001?011?0010?00010010001?00000000000100100010001 Silene_coniflora_S_04308 0101??1010001000?000???10000001?01??1001000?10?0?1?1000001000?11001011?1?1000110011?010?1010?00010000001?00000000000100000010001 Silene_conoidea_12655_02089 0101??1010001000?000???10000001?01??1001000?10?0?1?1000001000?11001011?1?101??????????????????????010001?00000000000100000010001 Silene_davidii_13374_02594 0101??001000??10???????00000001?001?0000010?10?0?1?1000001000?11001011?1?1000110001?00010010?00010010001?00000000000100000010001 Silene_diclinis_DIC_7_02829 01000100100000000000000000000101001?000101000010?1?100000101????001011?1?1000110001?01010010?00010010001?00000010?00100000000001 Silene_dioica_D184_24_a02827 0000010010001000?000000000000101001?000101000010?1?100000101????001011?1?1000110001?01010010?00010010001?00010010?00100000010001 Silene_dioica_D184_24_g04587 0000010010001000?000000000000101001?000101000010?1?100000101????001011?1?1000110001?01010010?00010010001?00010010?00100000010001 Silene_fruticosa_1064_FJ376914 011???0010001000?000??????10??1?001?001101000010?001000001000?1101?011?110000110001?110101???10010010001?00000000000??1?00??0011 Silene_heuffelii_H4_6_c02837 0100000010001000?00000000000011?001?0001010?10?0?001000001000?11001001?1?1000110001?01010010?00010010001?00000000000100000010001 Silene_heuffelii_H4_6_t04589 0100000010001000?00000000000011?001?0001010?10?0?001000001000?11001001?1?1000110001?01010010?00010010001?00000000000100000010001 Silene_integripetala_BOx2877_02312 0101??0010001000?000?????100?01?001?000101000010?1?1000001000?11001011?1?10001100000010100000000101?0001?000000000001000001?0001 Silene_latifolia_L121_9_03131 0101??0010001000?00000000000011?001?000101000010?00100000101????000011?1?1000110001?01010010?00010010001?00000010?00000000010001 Silene_latifolia_L170_10_02835 0101??0010001000?00000000000011?001?000101000010?00100000101????001011?1?1000110001?01010010?00010010001?00000010?00000000010001 Silene_latifolia_L200_2_03137 0101??0010001000?00000000000011?001?000101000010?00100000101????001011?1?1000110001?01010010?00010010001?00000010?00000000010001 Silene_latifolia_L81_9_03130 0101??0010001000?00000000000011?001?000101000010?00100000101????001011?1?1000110001?01010010?00010010001?00000010?00000000010001 Silene_littorea_2395_02630 0101??0000001000?00010000000001?001?0001010?10?0?001000101000?1100101000?1100110001?01010010?000100?1?0??00001?00000100000010??? Silene_littorea_2395_02631 0101??0010001000?00010000000001?001?0001010?10?0?001000101000?1100101000?1100110001?01010010?000100?1?0??00001?00000100000010??? Silene_lydia_L_04362 0101??1010001000?00000000000101?01??0001010?10?0?001000001000?1101?011?1?1000110001?010?1010?00010010001?00000100100100000010001 Silene_lydia_S_04315 0101??1010001000?00000000000101?01??0001010?10?0?001000001000?1101?011?1?1000110001?010?1010?00010010001?00000100100100000010001 Silene_macrodonta_13984_03120 0101??1010001000?000???10000001?01??0001010?10?0?001000001000?11001011?1?1000110001?010?1010?00010000001?00000000000100100010001 Silene_marizii_M4_1_02840 0100010010001000?000000000000101001?000101000010?1?100000101????001011?1?1000110001?01010010?00010010001?00000010?00100000010001 Silene_multinervia_P_01446 0101??0010001000?000???10000001?001?0001010000001001000001000?11001011?1?1001?10101?011?0010?00010010001?00000000000100000010001 Silene_multinervia_R_04363 0101??0010001000?000???10000001?001?0001010000001001000001000?11001011?1?1001?10101?011?0010?00010010001?00000000000100000010001 Silene_multinervia_S_02944 0101??0010001000?000???10000001?001?0001010000001001000001000?11001011?1?1001?10101?011?0010?00010010001?00000000000100000010001 Silene_nigrescens_KGB217_00644 0101??0010001000?000????1000?01?001?0001010?10?0?001000001000?11001011?1?1000110001?01010010?00010010001?00000000000100000010001 Silene_noctiflora_O_00278 0101??0010001000?000????1000?01?001?0001010?10?0?001000001000?11001011?1?1000110001?010?1010?00010010?1??????0000000100000010001 Silene_noctiflora_P_04110 0101??0010001000?000????1000?01?001?0001010?10?0?001000001000?11001011?1?1000110001?010?1010?00010010?1??????0000000100000010001 Silene_pendula_12654_2088 0101??0010001000?000????1000?01?001?0001010?10?0?1?0001????0????001011?1?1000110001?010?1010?00010010001?00000000000100000010001 Silene_pseudoatocion_7821_ 011???01?0001000?000?????100?01?00010011010?10?0?001000001000?1101?011?110000010001?11010010?00010010001?00000000001?10?00010001 Silene_samia_13410_00185 0101??0010001000?000?????100?01?00000101010?10?0?001000001000?11000011?1?1000110001?010?1000101011010001?00000000000100001???001 Silene_schafta_7615_AJ634088 011???0010001000?000????1000?01?001?001101000010?00100000?10010101?011?110000110001?11010010?00010010001?00000000000??1?00??0000 Silene_stellata_6374_00188 0101??001000???1??????????00?01?00010001010?10?0?1?1100001000?11001011?1?1000110001?00010010?00010010001?00000000000100000010001 Silene_stellata_6374_00193 0101??001000?100???0?0000000001?001?0001010??1??????00001??0???1001011?1?1000110001?00010010?00010010001?00000000000100000010001 Silene_subconica_1033_03493 0101??1010001000?000???10000001?01??0001010?10?0?001000001000?11001011?1?1000110001?011?0010?00010010001?00000000000100100010001 Silene_turkestanica_12484_03157 0101??0010001000?000????1000?01?001?000?1?0?10?0?001000001000?11001011?1?1000110001?010?1010?00010010?1??????0000000100000010001 Silene_uniflora_7827_02316 0101??0010001000?000?????100?01?001?0001011?10?0?001000001000?11001011?1?1000110001?010?1010?00110010001?00000000000100010???001 Silene_viscosa_2498_225 ??????????????????????????????1?001?0001010?10?0?1?1000001000?11001011?1?1000110001?01010010?00010010001?00000000000100000010101 Silene_viscosa_2498_226 0101??0010001000?000????1000?01?001?0001010?10?0?000000001000?1100101011?1001?10001?01010010?00010010001?00000000000100000010001 Silene_viscosa_7705_02155 0101??0010001000?000????1000?01?001?0001010?10?0?000000001000?1100101011?1001?10001?01010010?00010010001?00000000000100000010001 Silene_vulgaris_6459_00869 0101??0010001000?000?????100?01?001?0001011?10?0?001000001000?11001011?1?1000110001?010?1010?00110010001?00000000000100010???001 Silene_zawadzkii_2447_02317 0101??0010001000?000??100000001?001?000101000010?1?1000001000?11001011?1?1000110001?01010010?01010010001?00000000000100000010001 ; END; BEGIN TREES; Title RPB2_TB; LINK Taxa = taxa; TRANSLATE 1 Eudianthe_laeta_1341_FJ376888, 2 Lychnis_coronaria_7494_00216, 3 Lychnis_floscuculi_AJ634070_00236, 4 Lychnis_floscuculi_AJ634071_00237, 5 Lychnis_flosjovis_7566_00204, 6 Petrocoptis_pyrenaica_2486_AJ634073, 7 Petrocoptis_pyrenaica_2875_FJ376911, 8 Silene_ammophila_12639_03345, 9 Silene_aprica_6271_04306, 10 Silene_conica_E_02309, 11 Silene_coniflora_S_04308, 12 Silene_conoidea_12655_02089, 13 Silene_davidii_13374_02594, 14 Silene_diclinis_DIC_7_02829, 15 Silene_dioica_D184_24_a02827, 16 Silene_dioica_D184_24_g04587, 17 Silene_fruticosa_1064_FJ376914, 18 Silene_heuffelii_H4_6_c02837, 19 Silene_heuffelii_H4_6_t04589, 20 Silene_integripetala_BOx2877_02312, 21 Silene_latifolia_L121_9_03131, 22 Silene_latifolia_L170_10_02835, 23 Silene_latifolia_L200_2_03137, 24 Silene_latifolia_L81_9_03130, 25 Silene_littorea_2395_02630, 26 Silene_littorea_2395_02631, 27 Silene_lydia_L_04362, 28 Silene_lydia_S_04315, 29 Silene_macrodonta_13984_03120, 30 Silene_marizii_M4_1_02840, 31 Silene_multinervia_P_01446, 32 Silene_multinervia_R_04363, 33 Silene_multinervia_S_02944, 34 Silene_nigrescens_KGB217_00644, 35 Silene_noctiflora_O_00278, 36 Silene_noctiflora_P_04110, 37 Silene_pendula_12654_2088, 38 Silene_pseudoatocion_7821_, 39 Silene_samia_13410_00185, 40 Silene_schafta_7615_AJ634088, 41 Silene_stellata_6374_00188, 42 Silene_stellata_6374_00193, 43 Silene_subconica_1033_03493, 44 Silene_turkestanica_12484_03157, 45 Silene_uniflora_7827_02316, 46 Silene_viscosa_2498_225, 47 Silene_viscosa_2498_226, 48 Silene_viscosa_7705_02155, 49 Silene_vulgaris_6459_00869, 50 Silene_zawadzkii_2447_02317; TREE con_50_majrule = (1:0.13973,(((2:0.02079,5:0.015137)1.00:0.063359,((((((9:0.018799,13:0.004692,41:0.01842,42:0.014862)1.00:0.006929,(34:0.010681,(46:0.022714,50:0.005117)0.68:0.003076)1.00:0.008855)0.55:0.002424,(47:0.001406,48:0.001373)1.00:0.015868)1.00:0.016742,((((35:0.001467,36:0.001542)0.88:0.003497,44:0.008986)1.00:0.02131,(39:0.042814,(45:0.004808,49:0.001732)1.00:0.022565)0.99:0.008391)0.97:0.005069,37:0.027738,(((8:0.013363,(10:0.006367,43:0.003419)1.00:0.009604,29:0.016671)1.00:0.005666,(27:0.001398,28:0.001327)1.00:0.025936)0.73:0.002606,(11:0.011389,12:0.012325)1.00:0.016967)1.00:0.021138)1.00:0.005729)0.96:0.004119,(31:0.001376,33:0.001394,32:0.0027)1.00:0.02392)0.53:0.0029,(17:0.014223,38:0.049231,40:0.021282)1.00:0.027688)0.99:0.0065)0.85:0.005006,(3:0.001582,4:0.002877)1.00:0.082855,((((14:0.007327,((15:0.002818,16:0.001446)1.00:0.00575,30:0.002905)0.98:0.002902)1.00:0.006438,(24:0.001428,21:0.005829,22:0.002886,23:0.001411)0.75:0.003305)1.00:0.017513,(18:0.002671,19:0.001397)1.00:0.019417)1.00:0.011443,20:0.065969)1.00:0.009722,(25:0.016702,26:0.009054)1.00:0.063507)1.00:0.047669,(6:0.004278,7:0.004263)1.00:0.050551); TREE PAUP_1 = (1,(((2,5)100,(((9,13,41,42)74,(34,46,50)96,(47,48)100)99,((17,40)57,38)100,((((35,36)80,44)100,(39,(45,49)100)74)73,37,(((8,(10,43)100,29)94,(27,28)100)62,(11,12)100)100)50,(31,33,32)100)57,((((14,((15,16)97,30)61)92,(24,21,22,23)66)100,(18,19)100)97,20)93,(25,26)100)57,(3,4)100)99,(6,7)100)0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = RPB2_dna) = unord: 1 - 997; TYPESET * UNTITLED (CHARACTERS = RPB2_indels) = unord: 1 - 128; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = RPB2_dna) = universal: 1 - 997; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = RPB2_dna) = 'Jukes-Cantor': 1 - 997; ProbModelSet * UNTITLED (CHARACTERS = RPB2_indels) = 'Mk1 (est.)': 1 - 128; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1295560884571; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6473971661262569472; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8266923390155093502; mqVersion 273; checksumv 0 2 688097465 null getNumChars 997 numChars 997 getNumTaxa 50 numTaxa 50 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 831283.0 sumSquares -3.228180212899151E19 NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; setID 1 6823630728907792800; mqVersion 273; checksumv 1 2 2955947699 null getNumChars 128 numChars 128 getNumTaxa 50 numTaxa 50 short true bits 3 states 3 sumSquaresStatesOnly 10013.0 sumSquares 10013.0 NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 329; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 830 602; setLocation 281 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;