#NEXUS [written Thu Jan 20 16:39:41 EST 2011 by Mesquite version 2.73 (build 544) at dhcp128036177160.central.yale.edu/128.36.177.160] BEGIN TAXA; TITLE TaxaForAnalysisStep6818; DIMENSIONS NTAX=43; TAXLABELS Atocion_rupestre_13547_FJ383944 Eudianthe_laeta_1341_AJ634116 Lychnis_chalcedonica_2487_619 Lychnis_coronaria_7494_AJ634092 Lychnis_floscuculi_2406_AJ634114 Lychnis_floscuculi_2406_AJ634115 Lychnis_flosjovis_2506_595 Petrocoptis_pyrenaica_12875_FJ376932 Petrocoptis_pyrenaica_2486_AJ634093 Petrocoptis_pyrenaica_2486_AJ634094 Silene_ammophila_12639_03484 Silene_aprica_7570_00553 Silene_conica_O_AJ634145 Silene_coniflora_D_04319 Silene_coniflora_M_04323 Silene_coniflora_S_04321 Silene_coniflora_Z_02980 Silene_conoidea_12655_2967 Silene_elisabethae_2470_03094 Silene_elisabethae_2470_03347 Silene_fedtschenkoana_12312_04316 Silene_fruticosa_1064_00157 Silene_integripetala_1920_02382 Silene_littorea_2395_02565 Silene_lydia_L_04365 Silene_macrodonta_13984_03138 Silene_multinervia_P_01449 Silene_multinervia_R_04367 Silene_multinervia_S_03093 Silene_nigrescens_KGB217_00544 Silene_noctiflora_O_00542 Silene_noctiflora_P_4111 Silene_pendula_12654_03090 Silene_pseudoatocion_7821_FJ376934 Silene_pygmaea_13772_03483 Silene_quadriloba_12438_02968 Silene_schafta_7615_604 Silene_schafta_7615_605 Silene_subconica_1033_03495 Silene_turkestanica_12484_3139 Silene_uniflora_2403_00647 Silene_viscosa_7705_02969 Silene_zawadzkii_2447_00555 ; END; BEGIN CHARACTERS; TITLE RPD2a_dna; DIMENSIONS NCHAR=2013; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Atocion_rupestre_13547_FJ383944 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CCTTTCTCCT---CGAAGGAGAAAAA-CATACATGTG--------TTCATGACCTTTTGAACCACT-AAGGCTGTTACCGACTTACCGGTTTTAA-TTGATCT---GTTTA-AACAGCAGACTTCTTTGCTCTTACAAGAATCAAAACCTATATTTGGCC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTT--------ACTTTTTG-------TTCGGTTTCTGCTCAAGCACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-CGAGGGCAAAATATATTTTTTTATATATTTTATTATTAATATTTTTTTTATAACAGAAAAA-CTTGCCTACT-TTGGAAATGTAGATGAATGGCTAAGACTGATAAAAAA-GGAAGTCGAACAAATGAGCCAATGAGGGAGAGTGGGAGACAATGGGAGTATTTTT-AT----------------------ATTTTATCTTTG------ACTTGTTCTGAAGTGATTTATA-------------------------TTTTTG-----------TTTTTGCCCTT-GCACCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTGCCCC-CCCTACTTTTGTC------TTTGTTTTGTTGCCCT-GGAAATCATGATAATACTCCATAT-GGC-----TGTTCATGATA--GCTGGCCCCAACAAT??????????????????????????????????????????????? Eudianthe_laeta_1341_AJ634116 ACTCCATTTGCCACTCCCTCTGTCGAATCCATTACCGAGCAACTTCACAGGTCSGGTATCCCATTTAAGACTTGGCCCCTGTTCTTTTTAGACTTTTTTTTGCTTAACTTGGAACTTAAACTTTTCTGAACTGAACTTAGAAGTTGAACTTAACTTATTTTTGCTTTAACTTTTCTGAAGTTAACTTGTATTTGCTGAACTTAGTC-TTTGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCCTGTTGTTTATG--------------ATCGT-AACTTGACAAATGCCTTTCTCCTCCACAAAGGAGAAAAA-CAGATATGAG--------TTCATGATCTATTGAGCCACT-AAGACTGTTATC--------AGTTTTAA-TTGATCCATTGTTTA-AACAGCAGTCTTCGTTGCTTTTACA-GAATCAAAACCTATACTTGCCCATTGTATATTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTT--------ACCTGTGG-------TTCGGCTTCTTTTCAAGCATATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-CCATGGCAAAATAGTGATTTTTAA------------------------AAAAAAGGAAAAA-CTTGCCTGGT-TTGGAAATGTAGATGAATGGC------------AAAAGGGAAGTCGAACAAATGA-CTAATGAGCCAATGAGGGAGACAGTGGGAGTGTTTGT-AAATTTT--------CAT------CTTTGAGACTTTG-----ACTTGTTCTGAAATGATTTAAA--------------------------TTTTT----------GTTTTTCCCCTT-CCACCTTTTATGTCGTCT-ACATTTTTCTTCAA-TTTCGTGTACC--CCTACTTTTCTC------TTTGTTTTGTTACACT-GTAAATCATGAT--CACTCCATAT-GGCTCGCTAGTTCATGATA--GCTGGCCCCATCAATTTT-GGGACATACG--TTTATGAT-ATTCA-ATTGTTGATTGCAGGG Lychnis_chalcedonica_2487_619 ACCCCATTTTCCACCCCCTCTGTTGAATCCATTACAGAGCAACTTCATAGGTC-GGTATCCCATTTAAGACTTC---------------------------------------------------------------------------------------------------------------------------------GTTTTTTGGTTTTTTGTCTCTGTGGTTTATTTAAGTTTCACTTTGATTTTCAAAATCGTTTGAATCTATTATCGATTTAAATTCTAAGTTTTTATGAAAGAAATCCGGGCTTTGATTTTAAAACCTATAAGTTTATTTTGTCTTTGGTATTATGTTTCGCTCCCCTTTTGTTTTCTACTTTTTATTATTTTTTCGTATTTTGAGGTGTGCTCCTTGAACGGTTTAAAAGGATGATTCATGTCAGCCGACCCCAAATCATTTTGGGATTAAGGCTCTGATGTTGTTGTTGTTGTTGTCTCTGTGGTTTATGTTTTCTCAGTGATTATCTT-AATTTAGCAAATGCCTCCCTCT---AGGAAGGAGGAAAACCATATATGGG--------TTCATGATCTATTTAGCCACT-AAGACTGTTATC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGACGACTTCTTTGCTCTTACAAGAATCAAAGCCTATATGTGCTC--------ATTGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGTTT--------ACTTTTGG-------TTCGGTTTCTGTTCAAACACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAAAACAG-TTTTTTTTTTTTTTTTKG---------------TATAACAGAAAAA-CTTGCCTACT-TTGGAAATGTAAATGAATGGCTAAGCCGGATAAAAAAACGAAGTCAAACAAATGA----------------GGGAGACAACGGGAGTATTTTT-CTATTTG--------CATCTCT--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATT-----TTTTCAGTT-CATTTTT--ATTTTTG-----------TTTTGCCCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCTTGTCCC--TCGACTTCTCTA------TTTGTTTTGTTGTACT-GGAAATCATGATAATACTTCATAT-GGC-----TGTTCATGATA--TCTGGCCCCAAC------------ATGCA--TTATTGATCACTCACATTGTTGATTGCAGGG Lychnis_coronaria_7494_AJ634092 ACCCCATTTTCCACCCCCTCTGTTGAATCCATTACAGAGCAACTTCATAGGTC-GGTATCCCATTTAAGACTTC---------------------------------------------------------------------------------------------------------------------------------TTTTTTTGGTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGTGGTTTATGTTTTTACAGTGATTATCTT-AATTTAGCAAATGCCTCCTTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGGTCTAYTTAGCCACT-ACGACTGTTATC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGACGACTTCTTTGCTCTTACAAGAATCAAAGCCTATATGTGCGC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTT--------ACTTTTGG-------TTCGGTTTCTGTTCAAACACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAAAACAG-GTTTTTTG-------------------------TATAACAGAAAAA-CTTGCCTACT-TTGGAAATGTAAATGAATGGCTAAGACGGATAAAAAAACGAAGTCAAACAAATGA----------------GGGAGACAACGGGAGTATTTTT-CTATTTG--------CATCTCT--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATT-----TTTTCAGTT-CATTTTT--ATTTTTG-----------TTTTGCCTCTT-GCAGCTTCTATGT---CT-ACTCTTTTCTTCAATTTTCTTGTCCC--TCTACTTTTCTA------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT---------TGTTCATGATA--GCTGGCCCCAAC------------ACGCA--TTTATGATCACTCACATTGTTGATTGCAGGG Lychnis_floscuculi_2406_AJ634114 ACCCCATTCTCCACCCCCTCTGTTGAATCCATTACAGAGCAACTTCATAGGTT-GGTGTCCCATTTAAGACTTC---------------------------------------------------------------------------------------------------------------------------------GTTTTTTGGTATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTGTGGTTTATGTTTTCTCAGTGATTATCTT-AATTTAGCAAATGCCTCCCTCC---ACGAAGGACGAAAA-CATATATGGG--------TTCATGATCTATATAG-CACT-AAGACTGTTATC--------AGTTTTAA-TTGATCTGTTATTTA-AACAGACGACTTCTTTGCTCTTACAAGAATCAAAGCCTATATGTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTT--------ACTTTTGG-------TTCGGTTTCTGTTCAAAGACATGCAG--------GAGGGATGGCAATGGGTCGGGTTGGATCGGGTTTACAAGATCCAAACCTGATCCACTTACTTATTGGATCCCATATTCATATCCATACCCGATCCATATCCAAAAATTTAAAATCCATACCCGATCCATTATGCTTTTTTCAAATCCATACCCGCTCCAAATCCATACCCGCTCCACCATATAATCCAAAACCAATCCAAAACATGATCTGACTATATAAAAAATTAATCCTATATAGCTAAATTGAAATTTCTGGTTTAATAAAGCCTTAATTTTCAAAAATATCCATTTGGATCGGGTTCGGGTATGAATGGATCGGGTTTGGATTTGGTTCGGGTTTTCCAATAGTGGATTTGGATATGGGTTCTTAAAGAATGGATCAGGGATGGATTTTTAGAGGGTGGATTTGGATCGAGTATTCTCCTTCGGATCGGTTCGGGTTCGGTTCGG-----TTTGGGCCATAATTGCCATCCCTAAGATGTGAA-TGAGGGCAAAACAG-GTTTTTTG-------------------------TATAACAGAAAAT-CTTGCCTACT-TTGGAAATGTAAATGAATGACTAAGACGGATAAAAAAACGAAGTCAAACAAATGA----------------GGGAGACAACGGGAGTATTTTT-CTATTTG--------CATCTCT--ATTTTCACGTTTG-----ACATGTTCTGGAGTGAGTTATT-----TTTTAAGTT-CATTTTT--ATTTTTG-----------TTTTGCCCCTT-GCAGCTTTTGTGT---CT-ACTCTTTTCTTCAATTTTCTTGTCGC--TCTACTTTTCTACTCGTATTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TGTTCATGATA--GCTGGCCCCAAC------------ACGCA--TTTATGATCACCCACATTGTTGATTGCAGGG Lychnis_floscuculi_2406_AJ634115 ACCCCATTCTCCACCCCCTCTGTTGAATCCATTACAGAGCAACTTCATAGGTT-GGTATCCCATTTAAGACTTC---------------------------------------------------------------------------------------------------------------------------------GTTTTTTGGTATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTGTGGTTTATGTTTTCTCAGTGATTATCTT-AATTTAGCAAATGCCTCCCTCC---ATGGAGGACGAAAA-CATATATGGG--------TTCATGATCTATATAG-CACT-AAGACTGTTATC--------AGTTTTAA-TTGATCTGTTATTTA-AACAGACGACTTCTTTGCTCTTACAAGAATCAAAGCCTATATGTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTT--------ACTTTTGG-------TTCGGTTTCTGTTCAAAGACATGCAG--------GAGGGATGGCAATGGGTCGGGTTGGATCGGGTTTGCAAGATCCAAACCCGATCCACTTACTTATTGGATCCCATATTCATATCCATACCCGATCCATATCCAAAAATTTAAAATCCATACCCGATCCATTATGCTYTTTTCAAATCCATACCCGCTCCAAATCCATACCCGATCCACCATATAATCCAAAACCAATCCAAAACATGATCTGACTATATAAAAAATTAATCCTATATAGCTAAATTGAAATTTCTGGTTTAATAAAGCCTTAATTTTCAAAAATATCCATTTGGATCGGGTTCGGGTATGAATGGATCGGGTTTGGATTTGGTTCGGGTTTTTCAATAGTGGATTTGGATATGGGTTTTTAAAGAATGGATCGGGGATGGATTTTTAGAGGGTGGATTTGGATCGAGTATTCTCCTTCGGATCGGTTCGGGTTCGGTTCGGTTCGGTTTGGGCCATAATTGCCATCCCTAAGATGTGAA-TGGGGGCAAAACAG-GTTTTTTG-------------------------TATAACAGAAAAT-CTTGCCTACT-TTGGAAATGTAAATGAATGACTAAGACGGATAAAAAAACGAAGTCAAACAAATGA----------------GGGAGACAACGGGAGTATTTTT-CTATTTG--------CATCTCT--ATTTTCACGTTTG-----ACATGTTCTGAAGTGATTTATT-----TTTTAAGTT-CATTTTT--ATTTTTG-----------TTTTGCCCCTT-GCAGCTTTTGTGT---CT-ACTCTTTTCTTCAATTTTCTTGTCGC--TCTACTTTTCTACTCGTATTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TGTTCATGATA--GCTGGCGCCAAC------------ACGCA--TTTATGATCACCCACATTGTTGATTGCAGGG Lychnis_flosjovis_2506_595 ACCCCATTTTCCACCCCCTCTGTTGAATCCATTACAGAGCAACTTCATAGGTC-GGTATCCCATTTAAGACTTC-------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTGGTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGTGGTTTATGTTTTTACAGTGATTATCTT-AATTTAGCAAATGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGTTCTATTTAGCCACT-AGGACTGTTATC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGACGACTTCTTTGCTCTTACAAGAATCAAAGCCTATATGTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTT--------ACTTTTGG-------TTCGGTTTCTGTTCAAACACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAAAACAG-GTTTTTTG-------------------------TATAACAGAAAAA-CTTGCCTACT-TTGGAAATGTAAATGAATGGCTAAGACGGATAAAAAAACGAAGTCAAACAAATGA----------------GGGAGACAACGGGAGTATTTTT-CTATTTG--------CATCTCT--ATTTTCATCTTTG-----ATATGTTCTGAAGTGATTTATT-----TTTTCAGTT-CATTTTT--ATTTTTG-----------TTTTGCCTCTT-GCAGCTTCTATGT---CT-ACTCTTTTCTTCAATTTTCTTGTCCC--TCTACTTTTCTA------TTTTTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT---------TGTTCATGATA--GCTGGCCCCAAC------------ACGCA--TTTATGATCACTCACATTGTTGATTGCAGGG Petrocoptis_pyrenaica_12875_FJ376932 GCCCCATTTTCCACCCCCTCTGTTGAATCCATTACGGAGCAACTTCATAGGTC-GGTATCCCATTTAAGACTTG---------------------------------------------------------------------------------------------------------------------------------GTCTTTTTCTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTC------------------------------------AGCAAATGCCTTTCTCC---ATGAAGGAGAAAAA-CAGATATCGG--------TTCGTGATCTATTGAGCCACT-AAGACTGTTACC--------AATTTTAA-TTGATCTGTTGTTTA-AAGAGCGAGCTTCTTTGCTCTTACAAGAATCAAAACCTATACTTGCCC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTT--------ACTTTTGG-------TTCGGTTTCTGTTCGAGCAGATGCAG--------GTGAGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-CGAGGGCAAAATAG-GTTTTTT--------------------------GATAACAGAAAAA-CTTGCGTACT-CCAGAAATGTAGATGAATGGCTAAGACGGAT-AACAAAGGAAGTCAAACAAATGA--------GCCAATGAGGGAGACAACGGGAGTATTTTT-ATATTTT--------CAT--------------CTTTG-----ACTTGTTCTGAAGTGATTTGTATTTTATTTTCATTT-CATTTTT----TTCCG----------GTTTTTCCCCTT-GCACCTTTGATGT---CT-ACTTTTTTCTTCAATGTTCGTGTCCC--CCTGCTTTTCTC------TTTCTTTTGTT-CACT-GGAAATCATGATATTACTCCATAT-GGC-----TGTTCATGATA--GCTGGCCCCAACAATTTTTGGGACACGCG--TTTATG????????????????????????? Petrocoptis_pyrenaica_2486_AJ634093 ACCCCATTTTCCACCCCCTCTGTTGAATCCATTACGGAGCAACTTCATAGGTC-GGTATCCCATTTAAGACTTG---------------------------------------------------------------------------------------------------------------------------------GTCTTTTTCTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTC------------------------------------AGCAAATGCCTTTCTCC---ATGAAGGAGAAAAA-CAGATATGGG--------TTCGTGATCTATTGAGCCACT-AAGACTGTTACC--------AATTTTAA-TTGATCTGTTGTTTA-AAGAGCAGACTTCTTTGCTCTTACAAGAATCAAAACCTATACTTGCCC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTT--------ACTTTTGG-------TTCGGTTTCTGTTCGAGCAGATGCAG--------GTGAGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-CGAGGGCAAAATAG-GTTTTTT--------------------------GATAACAGAAAAA-CTTGCGTACT-CCAGAAATGTAGATGAATGGCTAAGACGGAT-AACAAAGGAAGTCAAACAAATGA--------GCCAATGAGGGAGACAACGGGAGTATTTTT-ATATTTT--------CAT--------------CTTTG-----ACTTGTTCTGAAGTGATTTGTATATTATTTTCATTT-CATTTTT----TTTTG----------GTTTTTCCCCTT-GCACCTTTGATGT---CT-ATTTTTTTCTTCAATGTTCGTGTCCC--CCTGCTTTTCTC------TTTCTTTTGTT-CACT-GGAAATCATGATATTACTCCATAT-GGC-----TGTTCATGATA--GCTGGCCCCAACAATTTTTGGGACACGCG--TTTATGATCACTCA-ATTGTTGATTGCAGGG Petrocoptis_pyrenaica_2486_AJ634094 ACCCCATTTTCCACCCCCTCTGTTGAATCCATTACGGAGCAACTTCATAGGTC-GGTATCCTATTTAAGACTTG---------------------------------------------------------------------------------------------------------------------------------GTCTTTTTCTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTC------------------------------------AGCAAATGCCTTTCTCC---ATGAAGGAGAAAAA-CAGATATGGG--------TTCGTGATCTATTGAGCCACT-AAGACTGTTACC--------AATTTTAA-TTGATCTGTTGTTTA-AAGAGCAGACTTCTTTGCTCTTACAAGAATCAAAACCTATACTTGCCC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTT--------ACTTTTGG-------TTCGGTTTCTGTTCGAGCAGATGCAG--------GTGAGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-CGAGGGCAAAATAG-GTTTTTT--------------------------GATAACAGAAAAA-CTTGCGTACT-CCAGAAATGTAGATGAATGGCTAAGACGGAT-AACAAAGGAAGTCAAACAAATGA--------GCCAATGAGGGAGACAACGGGAGTATTTTT-ATATTTT--------CAT--------------CTTTG-----ACTTGTTCTGAAGTGATTTGTATTTTATTTTCATTT-CATTTTT----TTTTG----------GTTTTTCCCCTT-GCACCTTTGATGT---CT-ACTTTTTTCTTCAATGTTCGTGTCCC--CCTGCTTTTCTC------TTTCTTTTGTT-CACT-GGAAATCATGATATTACTCCATAT-GGC-----TGTTCATGATA--GCTGGCCCCAACAATTTTTGGGACACGCG--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_ammophila_12639_03484 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATAGGGCCACT-AAGACTGATACC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAACTGTTTTCTT-GCTCTTACAAGAATCAAAGCC-----ATGCTCATTGT---ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTA--------ACTTTTGG-------TTCACTTTCTGTTCAAGCACATGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGGAATGTAGATGAATGACTAAGATGAAT-AAAAAAGGAAGTCAAACAAATGA----------------GCGAGAGAACAGGAGTATTTTA-ATATTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTGCAGTT-CATTTTTTTATTTTTG------TTTTATGTTGCTTCTTAATAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTTGTGTCCC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAATCATGATAATA------------------------GATA--GCTGGCTCCAACAACTTTTGGGACATGCA--TTTATGATCAGTCA-ATTGTTGATTGCAGGG Silene_aprica_7570_00553 ACCCCATTTTCCACACCTTCTGTTGAATCGATTACAGAGCAACTTCATAGGTC-TGTATCCCATTTACGACTTC---------------------------------------------------------------------------------------------------------------------------------GTCTTTTGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGTGGTTTCTGTTTTCTCAGTGATTATCTTAAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-TAT--ATGGG--------TTCATGATCTATTGAGCCACT-AAGACTGTTACC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGC-TTCTATTCAAGAACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTTTTTT?-------------------------GATAACAGAAAAA-CTTGCCTACT-TTGGTAATGTAGATGAATGGCTAAGATGGAT-AACAAAGGAAGTCAAATAAATGA----------------GGGAGAGAGCGGGGGTATTTTT-AT----------------------ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCATTT-CATTTTC--ATTTTTG------TTTTGTTTTGCCCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTGTCCG--TCTACTTTTCTT------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCAGAT-TGC-----TGTTCATGATA--GCTGGTCCCAACAACTTTTGGGACTTGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_conica_O_AJ634145 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCCGTGGTTTATGTTTTCTCAGTGATTATCTTGAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTGGGCCACT-AAGACTGATACC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTT-GCTCTTACAAGAATCAAAGCCTGTACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTA--------ACTTTTGG-------TTCCCTTTCTGTTCAAGCACATGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGAAATGTAGATGAATGACTAAGATGAATAAAAAAAGGAAGTCAAACAAATGA----------------GCGAGAGAACAGGAGTATTCTT-ATATTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTTTGAAGTGATTTATA-----ATTTCATTT-CATTTTTT-ATTTTTG------TTTTGTGTTGCTTCTTAATAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTTGTGTCCC--TCTACTTTTCTC------TTTCTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TATTCATGATA--GCTGGCTCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_coniflora_D_04319 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TTATGTTTTCTCGGTGATTATCTTAAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTGGGCCACT-AAGATTGATACC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTTTT-GCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTA--------ACTTTTGG-------TTCCCTTTCTGTTCAAGGACATGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGAAATGTAGATGAATGACTAAGATGAAT-AAAAAAGGAAGTCAAACAAATGA----------------GCGAGAGAACAGGA---------ATATTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCCTTT-CATTTTTA-ATTTTTG------TTTTGTGTTGCTTCTTAATAGCTTTTATGT---CT-ACTCTTT-CTTCAATTTTTGTGCCTC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TATTCATGATA--GCTGGATCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_coniflora_M_04323 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTTTTCTCGGTGATTATCTTAAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTGGGCCACT-AAGACTGATACC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTTTT-GCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTA--------ACTTTTGG-------TTCCCTTTCTGTTCAAGGACATGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGAAATGTAGATGAATGACTAAGATGAAT-AAAAAAGGAAGTCAAACAAATGA----------------GCGAGAGAACAGGAGTATTTTT-ATATTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCCTTT-CATTTTTA-ATTTTTG------TTTTGTGTTGCTTCTTAATAGCTTTTATGT---CT-ACTCTTT-CTTCAATTTTTGTGCCTC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TATTCATGATA--GCTGGATCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_coniflora_S_04321 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TTATGTTTTCTCGGTGATTATCTTAAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTGGGCCACT-AAGATTGATACC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTTTT-GCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTA--------ACTTTTGG-------TTCCCTTTCTGTTCAAGGACATGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGAAATGTAGATGAATGACTAAGATGAAT-AAAAAAGGAAGTCAAACAAATGA----------------GCGAGAGAACAGGAGTATTTTT-ATATTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCCTTT-CATTTTTA-ATTTTTG------TTTTGTGTTGCTTCTTAATAGCTTTTATGT---CT-ACTCTTT-CTTCAATTTTTGTGCCTC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TATTCATGATA--GCTGGATCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_coniflora_Z_02980 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTTTTCTCGGTGATTATCTTAAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTGGGCCACT-AAGACTGATACC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTTTT-GCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTA--------ACTTTTGG-------TTCCCTTTCTGTTCAAGGACATGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGAAATGTAGATGAATGACTAAGATGAAT-AAAAAAGGAAGTCAAACAAATGA----------------GCGAGAGAACAAGAGTATTTTT-ATATTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCCTTT-CATTTTTA-ATTTTTA------TTTTGTGTTGCTTCTTAATAGCTTTTATGT---CT-ACTCTTT-CTTCAATTTTTGTGCCTC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TATTCATGATA--GCTGGATCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_conoidea_12655_2967 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTGGGCCACT-AAGACTGATACC-------GTTTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTT-GCTCTTACAAGAATCAAAACCTATACCTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTGTTA-----ACTTTTGG-------TTCCCTTTCTGTTCAAGGACATGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGAAATGTAGATGAATGACTAAGATGAAT-AAAAAAGGAAGTCAAACAAATGA----------------GCGAGAGAACAGGAGTATTTTT-ATATTTA---------ATCCCTCTATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCATTT-CATTTTTT-ATTTTTG------TTTTGTGTTGCTTCTTAATAGCTTTTATGT---CT-ACTCTTT-CTTCAAATTTTGTGCCCC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TATTCATGATA--GCTGGCTCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_elisabethae_2470_03094 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGATTATCTTAAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTGAGCCACT-AAGACTGATACC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGCTTTCTGTTCAAGCACATGCAGTGATGCAGGTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CGTAATTTTTTT-------------------------TATAACAGAAAAA-CTTGCCTACT-TTGGAAATGTAGATGAATGGCTAAGATGGAT-AAGAAAGGAAGTCAAACAAATGA----------------GGGAGAGAACGGGAGTATTTTT-ATATTTT---------ATCTCA--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCATTT-CATTTTTT-ATTTTTG------TTTTGTTTTGCCCCTT-ACAGCTTTTATGT---CTTACTCTTTTCTTCAGCTTTCGTGTCCC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAAACATGATAATACTCCATAT-GGC-----TGTTCATGATA--ACTGGCCCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_elisabethae_2470_03347 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGATTATCTTAAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGGACTATGGGTTCATGATCTATTGAGCCACT-AAGACTGATACC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGCTTTCTGTTCAAGCACATGCAGGGATGCAGGTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAAGGCAA--CGTARTTTTTTT-------------------------TATAACAGAAAAA-CTTGCCTACT-TTGGAAATGTAGATGAATGGCTAAGATGGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAACGGGAGTATTTTT-ATATTTT---------ATCTCA--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCATTT-CATTTTTT-ATTTTTG------TTTTGTTTTGCCCCTT-ACAGCTTTTATGT---CTTACTCTTTTCTTCAGCTTTCGTGTCCC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAAACATGATAATACTCCATAT-GGC-----TGTTCATGATA--ACTGGCCCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_fedtschenkoana_12312_04316 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGTGGTTTCTGTTTTCTCAGYGATTATCTTAAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CAT--ATGGG--------TTCATGATCTATTGAGCCCCTTAAGACTGTTACC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGGACTTTGGTTCAC-TTCTATTCAAGAACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTTTTTTT-------------------------GATAACAGAAAAA-CTTGCCTACT-TTGGTAATGTAGATGAATGGCTAAGATGGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAGCGGGAGTATTTTT-AT----------------------ATTTTCATCTTTG-----ACATGTTCAGAAGTGATTTATA-----TTTTTATTT-CATTTTC--ATTTTTGTTTTTGTTTTGTTTTGCCCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTTTCCG--TCTACTTTTCTT------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCAGAT-TGC-----TGTTCATGATA--GCTGGCCCCAACAACTTTTGGAACTTGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_fruticosa_1064_00157 ACCCCATTTTCCACACCTTCTGTTGAATCCATTACAGAGCAACTTCATAGGTT-GGTATCCCATTTAAGACTTT---------------------------------------------------------------------------------------------------------------------------------GTCTTTTGGTTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGTGGTTTATGTTTTCTCAGTGATTATCTT-AATTTAGCAAATGCCTCCTTCC------AAGGAGGAAAA-TATATATGGG--------TTCATGATCTATTGAGCCACT--AGACTTTTACC--------GGTTTTAA-TTGACCTGTTGTTT-------------------------------------------------------------GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGGTTTCTGTTCAAGCACGTGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTGTTTTT-------------------------KATAACAGAAAAA-CTTGCCTACT-TTGGAAAGGTAGATGAA-GGCTAAGACTGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAACAGGAGTATTTTTTATATTTTCAATTTTTCATCTCT--ATTTTCATCTTTA-----ACATGTTCTGGAGTGATTTATA-----TTTTCTTTG-CATTTTT-----------------------------------------ATGT---CT-ACTCTTTTCTTCAATTTTCGTGTTCC--TTTACTTTTCCC------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATTT-TGC-----CGTTCATGATA--GCTGGCCTCAGCAAGTTTTGGGACATTCA--TTTATGATCACTCA-ACTGWTKATTGCWGGG Silene_integripetala_1920_02382 ????????????????????????????????????????????????????????????????????GACTTG---------------------------------------------------------------------------------------------------------------------------------GTCTTTTGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCTGTGGTTTATGTTTTCTCAGTTATTATCTT-AATTTAGCAAATGCCTCCCACC------AAGGAGGAAAA-CATATGTGGG--------TTCGTGATCTATTGAGCCACT-AAGACTGTTACC--------GGTTTTAA-TTGATCTGTTGTTTA---------------------------------------------------------GTTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCTTTCTCTGTTCAAGCACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-YGAGGGCAA---ATAGTTTTTTT-------------------------GATAACAGAAAAAACTTGCCTACT-TTGGTAATGTAGRTAAATGGYTAAGATGGAT--------GAAGTCAAACAAATGA----------------GGGAGAGAAMAGGAGTATTTTT-ATATTTT--------CATTTCT--ATTTTCATCTTTG-----ACATGTTCGGAAGTCATTTATA-----TTTTCATTT-CCTTTAT--ATTTTTG------TTTTGCTTCGCTCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAGTWTTCGTGCCCC--TCTACTTTTCTC------TTTGTTGTGATGTACT-GGAAATCACGATACTACTCCATATGGGC-----TGTTCATGATG--ACTGGCCCCAACAACTTTTGGGACATGCACATTTATGATCATTCA-ATTGTTGATTGCAGGG Silene_littorea_2395_02565 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCT--GTGGTTTATGTTTTCTCAGTGATTATCTT-AACTTAGCAA-TGCCTCCCACC------AAGTAGGAAAA-CATATATGGG--------TTCATGATCTACCGAGCCACT-AAGACTGTTACC--------GGTTTTAA-TTGATCTGTTGTTTA---------------------------------------------------------ATGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------AAGTTTGG-------TTTGGTTTCTGTTCAAGCACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGA-GGCAA--CATAGTTTTTTTTTT----------------------TATAACAGAAAAA-CTTGCCTACT-TTTGAAAGGGAAATGAATGGCTAAGACGGAT-AAAAAAGTAAGTCAAACAAATGA----------------GGGAGAGAACGGGAGTTTTTTT-ATATTTT--------CATCTCT--ATTTTCATGTTTG-----ACATGTTCCGGAATGATTTATA-----TTTTCATTT-CATTTAT--ATTTTTG-----------TTTTGCCGCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAGTTTTCGTGTCCC--TTTACTTTTCTC------TTTGTTTTGCATCACT-GGAAATCATGATAATGCTCCATATATGC-----TGTTCATGATATAGCTGGCCC-AACAACTATTGG-ACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_lydia_L_04365 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTCAGTGATTATCTTAAATTTAGCAAACTCCTTCCTCC---AGGAAGGAGGAAAA-TATATATGGG--------TTCATGATCTATTGGGCCACT-AAGACTGATACT--------GGTTTTAG-TTGATCTGTTGCTTA-AACAGCTGTTTTCTT-GCTCTTACAACAACCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTA--------ACTTTTGG-------TTCCCTTTCTGTTCAAGCACATGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGAAATGTAGTTGAATGGCTAAGATGAAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAACAGGAGTATTTTT-ATTTTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATATATATATA???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Silene_macrodonta_13984_03138 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTGGGCCACT-TAGACTGATACC--------GGTTTTAA-TTGATCTGTCGTTTA-AACATCTGTTTTCTT-GCTCTTACAAGAATCAAAGCCTATACTTGCAC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTA--------ACTTTTGG-------TTCCCTTTCTGTTCAAGCACATGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCGACT-TTGGAAATGTAGATGAATGACTAAGATGAAT-AAAAAAGAAAGTCAAACAAATGA----------------GCGAGAGAACAGGAGTATTTTT-ATATTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCATTT-CATTTTTT-ATTTTTG------GTTTGTGTTGCTTCTTAATAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTTGTGTCCC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TATTCATGATA--GCTGGTTCCGACAACTT---------GCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_multinervia_P_01449 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTCTGTGGTTTATGTTTTCTCAGTGATTATCTTAAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTGAGCCACT-AAGACTATTACT--------GTTTTTAG-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGC-TTCTATTCAAGCACATGCAG--------ATGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTTTTTTT-------------------------GATAACAGAAAAA-CTTCCCTACT-TTGGTAATGTAGATGAATGGCTAAGATGGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAATGGGAGTATTTTT-AT----------------------ATTTTCATCTTTG-----ACATGTTCTGAAGTGGTTTATG-----TTT-CATTT-CATTTAT--ATTTTTG------TTTTCTTTGGCTCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTGTCCC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TCTTCATGATA--ACTGGCCCCAACAACTTTTGGGACATGCA--TTTATGATCTCTCA-ATTATTGATTGCAGGG Silene_multinervia_R_04367 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTGGTTTATGTTTTCTCAGTGATTATCTTAAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTGAGCCACT-AAGACTATTACT--------GTTTTTAG-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGC-TTCTATTCAAGCACATGCAG--------ATGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTTTTTTT-------------------------GATAACAGAAAAA-CTTCCCTACT-TTGGTAATGTAGATGAATGGCTAAGATGGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAATGGGAGTATTTTT-AT----------------------ATTTTCATCTTTG-----ACATGTTCTGAAGTGGTTTATG-----TTT-CATTT-CATTTAT--ATTTTTG------TTTTCTTTGGCTCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTGTCCC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TCTTCATGATA--ACTGGCCCCAACAACTTTTGGGACATGCA--TTTATGATCTCTCA-ATTATTGATTGCAGGG Silene_multinervia_S_03093 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGTTTTCTCAGTGATTATCTTAAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTGAGCCACT-AAGACTATTACT--------GTTTTTAG-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGC-TTCTATTCAAGCACATGCAG--------ATGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTTTTTTT-------------------------GATAACAGAAAAA-CTTCCCTACT-TTGGTAATGTAGATGAATGGCTAAGATGGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAATGGGAGTATTTTT-AT----------------------ATTTTCATCTTTG-----ACATGTTCTGAAGTGGTTTATG-----TTT-CATTT-CATTTAT--ATTTTTG------TTTTCTTTGGCTCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTGTCCC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TCTTCATGATA--ACTGGCCCCAACAACTTTTGGGACATGCA--TTTATGATCTCTCA-ATTATTGATTGCAGGG Silene_nigrescens_KGB217_00544 ACCCCATTTTCCACACCTTCTGTTGAATCGATTACAGAGCAACTTCATAGGTC-TGTATCCCATTTACGACTTC---------------------------------------------------------------------------------------------------------------------------------GTCTTTTGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGTGGTTTCTGTTTTCTCAGTGATTATCTTAAATTTAGCGAACGCCTCCCTCC-CAGGAAAGGAGGAAAA-CAT--ATGGG--------TTCATGATCTATTGAGCCACT-AAGACTGTTACC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTGGCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGC-TTCTATTCAAGAACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTTTTTTT-------------------------GATAACAGAAAAA-CTTGCCTACT-TTGGTAATGTAGATGAATGGCTAAGATGGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAGCGGGAGTATTTTT-AT----------------------ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCATTT-CATTTTC--ATTTTTG------TTTTGTTTTGCCCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTTTCCG--TCTACTCTTCTT------TTTGTTTTGTTGCACT--GAAATCATGATAATACTCCAGAT-TGC-----TGTTCATGATA--GCTGGCCCCAACAACTTTTGGGACTTGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_noctiflora_O_00542 ACCCCATTTTCCACACCYTCTGTTGAATCCATTACAGAGCAACTTCATAGGTC-TGTATCCCATTTAAGACTGC---------------------------------------------------------------------------------------------------------------------------------GTCTTTTGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGTGGTTTATG-------------------------------------------------------AAAA-TATATATGGG--------TTCATGATCTATTGAGCCACT-AAGACTGATACC--------GGTTTTAA-TTGATCTGTTGTTTATAACAGCTGTTTTCTTTGCTTTTGCAAGAATCAAAGCCTATACWTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCCCTTTCTGTTCARGCACATGGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGAAATGTCGATGAA---------TGGAT-AAAAAACGAAGTCAAACAAATGA----------------GGGAGAAAACGGGAGTATTTTT-ATATTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTC-GAAGTGATTTATA-----YTTTCATTTCCTTTTTT--ATTTTTG------TTTTGTTTTACCCCTT-GCAGCYTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTGTCCCCCTCTACTTTTCTC------TTTGTTTTATTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TGTTCAAGATA--ACTGGCTCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_noctiflora_P_4111 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGGG--------TTCATGATCTATTGAGCCACT-AAGACTGATACC--------GGTTTTAA-TTGATCTGTTGTTTATAACAGCTGTTTTCTTTGCTTTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCCCTTTCTGTTCAAGCACATGGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGAAATGTCGATGAA---------TGGAT-AAAAAACGAAGTCAAACAAATGA----------------GGGAGAAAACGGGAGTATTTTT-ATATTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTC-GAAGTGATTTATA-----TTTTCATTTCCTTTTTT--ATTTTTG------TTTTGTTTTACCCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTGTCCCCCTCTACTTTTCTC------TTTGTTTTATTGCACT-GGAAATCATGATAATACTCCATAT-GGC-----TGTTCAAGATA--ACTGGCTCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGG? Silene_pendula_12654_03090 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TTAGCAAACGCCTCC-TCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGGTCTATTGAGCCACT-AAAACTG-TACC--------AGTTT-AA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGATCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGC-TTCTATGCAAGCACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTTTTTTTT------------------------GATAACAGAAAAA-CTTGCCTACT-TTGGTTATGTAGATGAATGGCTAAGATGGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAACGGGAGTACTTTT-ATATTTT--------CATCTCT--ATTTTCATCTTTG------CATGTTCTGAAGTGATTTATA-----TTTTCATTT-CATTTAT--ATTTTTG------TTTTGTTTTTCCCCTT-GCAGCATTTATGT---CT-GGTCTTTTCTTCAATTTTCGTGTCCC--TCTAGTTTTCTC------TTTGTTCTGTTGCACT-GGAAATCCTGATAATACTCCATAT-CGC-----TGTTCATGAAA--ACTGGTCCCAACAACTTTTGGGACATGCA--TTTATGGTCACTCA-ATTGTTGATCGCAGGG Silene_pseudoatocion_7821_FJ376934 ??????????????????????????????????????????????????????????????????????CTTG---------------------------------------------------------------------------------------------------------------------------------GTCTTTTGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGTAGTTTATGTTT-CTCAGTGATTATCTT-AATTTAGCAAATGCCTCCCACC------AAGGAGGAGAA-CATATATGGG--------TTCATGATCCATTGAGCATCT-AAGACTGTTTCG--------GGTTTTAA-TTGATCTGTTGTTTA---------------------------------------------------------ATTGT-ACTTACTCCATTCAAATCCACACTACACGTTTCTTTTTTCACGTTTGCCAACACGAGTTTTTCACCGGAAATATGGTTAGCTACCTATTTGCGAAAAATATTAAAATACGAAGTAAATTTTTAATGTACTCTTACAATCGAATAAAACAAGATCACACATGAATTTATTTCCATGTACGGATTAGGAGAAAAATGACGTTAAATACTCACATGTGAATAGTGTCAAAAAATGGATAGTGTAGAGTGGATTTGAATGGAGGAAGTAAATGTTT--------ACTGTTCT-----------------GTTCAAGGCCATGCAG--------GTGTGGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGACAA--CATAGTTTTTT----------------------CACAAATAACAGAAAAA-GTTTCCTACT-TTGAAAAGGTAGATGAATGGCTAAGACGGAT-AAAAAAGGAAGTCGAACGAATGA----------------GGGAGAGAACGGGAGTATTTT--ATGTTTT--------CGTCTCT--ATTTTCATCTTTG-----ACATGTTCTGGAGTGATTTATA-----TTTT------CATTTAT--ATTTTTG------TTTTGCCATTT------GCAGCTTTTATGT---CT-ACTCTTTTCTCCAATTTCTGTGTCCC--TTTACTTTTCTC-------TTTTTTTGTTGCACG-GGAAATCATGATAATACTCCATATTGCC------GTTCATCATA--GCTGTGCCCAACAAGTTTTGGGACATTCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_pygmaea_13772_03483 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTT-AATTTAACAAATGCCTCCCATC------AAGGAAGAGAA-CATATATGGG--------TTCATGATCTATTGAGCCACT-AAGACTGTTACC--------GGTTTTAA-ATGATGTGTTGTTTA---------------------------------------------------------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTGT--------ACTTTTGG-------TTCGGTTTCTGTTCAAGCACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTTTTTTT-------------------------GATAACAGAAAAA-CTTGCCTACT-TTTGAAAGGTAAATGAATGGCCAAGACGGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAACGGGAGTATTTTT-ATATTTA--------CGTATCT--ATTTTCATCTTTG-----ACATGTTCTGGAGTGATTTATA-----TTTTCGTTT-CATTTAT--ATTTTTG-----------TTTTGCCCCTT-GCAGCTTTTATGT---CC-ACTCTTTTCTTCAATTTTTGTGTCCC--TTTACTTTTCTC------TTTGTTTTGTTGCACT-GTAAATCATGATAATACTCCATAT-TGC-----CGTTCATGATA--GCTGGCCCCAACAAGTTTTGGGACATTCA--TTGATGATCACTCA-ACTGTTGATTGCAGGG Silene_quadriloba_12438_02968 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AATTTAACAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CAT--ATGGG--------TTCATGATCTATTGAGCCACT-AAGACTGTTGCC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCRC-TTCTATTCAAGAACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCA---CATAGTTTTTTT-------------------------GATAACAGAAAAA-CTTGCCTACT-TTGGTAATGTAGATGAATGGCTAAGATGGAT-AAAAAAGGAAGTCGAACAAATGA----------------GGGAGAGAGCGGGAATATTTTT-AT----------------------ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCATTT-CATTTTC--ATTTTTG------TTTTGTTTTGCCCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTGTC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Silene_schafta_7615_604 ACCCCATTTTCCACACCTTCTGTTGAATCCATTACAGAGCAACTTCATAGGTC-GGTATTACATTTAAGACT-----------------------------------------------------------------------------------------------------------------------------------GTCTTTTGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGTGGTTTATGTTTTCTCAGTGATTATCTT-AATTTAGCAAATGCCTCCCACC---------AAGGAGAA-CATATATAGG--------TTCATGATCTATTGAGCCACT-AAGACTGTTACC--------GGTTTTAA-TTGATCTGTTGTTTA---------------------------------------------------------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGGTTTCTGTTCAAGCACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGAGGGCAA--CATAGTTTTTTT-------------------------GATAACAGAAAAA-CTTGCCTACT-TTTGAAAGGTAAATGAATGGCTAAGACGGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAACGGGAATATTTTT-ATATTTT--------CATCTCT--ATTTTCATCTTTG-----ACATGTTCTGGAGTGATTTATA-----TTTTCATTT-CATTTTT--ATTTTTG-----------TTTTGCCCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTGTCCC--TTTACTTTTCTC------TTTGTTTTGTTCCACT-GGAAATCATGATAATACTCCATAT-TGC-----TGTTCATGGTA--GCTGGCCCCAACAACTATTGGGACATTCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_schafta_7615_605 ACCCCATTTTCCACACCTTCTGTTGAATCCATTACAGAGCAACTTCATAGGTC-GGTATTACATTTAAGACC-----------------------------------------------------------------------------------------------------------------------------------GTCTTTTGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGTGGTTTATGTTTTCTCAGTGATTATCTT-AATTTAGCAAATGCCTCCCACC------AAGGAGGAGAA-CATATATAGG--------TTCATTATCTATTGAGCCACT-AAGAC--TTACC--------GGTTTTAA-TTGATCTGTTGTTTA---------------------------------------------------------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGGTTTCTGTTCAAGCACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTTTTTTT-------------------------GATAACAGAAAAA-CTTGCCTACT-TTTGAAAGGTAAATGAATGGCTAAGACGGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAACGGGAGTATTTAT-ATATTTT--------CGTCTCT--ATTTTCATCTTTG-----ACATGTTCTGGAGTGATTTATA-----TTTTCGTTT-CATTTAT--ATTTTTG-----------TTTTGCCCCTT-GCAGATTTTATGT---CC-ACTCTTTTCTTCAATTTTTGTGTCCC--TTTACTTTTCTC------TTTGTTTTGTTGCACT-GTAAATCATGATAATACTCCATAT-TGC-----CGTTCATGATA--GCTGGCCCCAACAAGTTTTGGGACATTCA--TTGATGATCACTCA-ACTGTTGATTGTAGGG Silene_subconica_1033_03495 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TTTCTGAGTGATTATCTTGAATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCATGATCTATTAGGCCACT-AAGACTGATACC--------GGTTTTAA-TTGCTCTGTTGTTTA-AACAGCTGTTTTCTT-GCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTA--------ACTTTTGG-------TTCCCTTTCTGTTCAAGCACATGCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGAAATGTAGATGAATGACTAAGATGAAT-AAAAAAGGAAGTCAAACAAATGA----------------GCGAGAGAACAGGAGTATTCTT-ATATTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTCTGAAGTG--TTATA-----TTTTCATTT-CATTTTTT-ATTTTTG------TTTTGTGTTGCTTCTTAATAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTTGTGTCCC--TCTACTTTTCTC------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCATAT-TGC-----TATTCATGATA--GATGGCTCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_turkestanica_12484_3139 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AATTTAGCAAACGCCTCCCTCC---AGGAAGGAGGAAAA-TATATATGGG--------TTCATGATCTATTGAGCCACT-AAGACTGATACC--------GGTTTTAA-TTGATCTGTTGTTTATAACAGCTGTTTTCTTTGCTTTTACAAGAATCAATGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCCCTTTCTGTTCAAGCACATGGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CTTGCCTACT-TTGGAAATGTAGATGAA---------TGGAT-AAAAAACGAAGTCAGACAAATGA----------------GGGAGAGAACGGGAGTATTTTT-ATATTTA---------ATCTCT--ATTTTCATCTTTG-----ACATGTTC-GAAGTGATTTATA-----TTTTCATTTCCTTTTTT--ATTTTTG------TTTTGTTTTACCCGTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTGTCCCCCTCTACTTTTCTC------TTTGTTTTATTGCACT-GGAAATCATGATAATACTCCATAT----------GTTCAAGATA--ACTGGCTCCAACAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_uniflora_2403_00647 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTCTTTTGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTCTGGTTTATGTTTTCTCAGTGATTATCTTAAATTTAGCAAACGTCTCCCTCC---AGGAAGGAGGAAAA-CATATATGGG--------TTCAT-ATCTATTGCGCCACT-AAGACTGTTACCAACTTACCGGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGATCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT---ACTTTACTTTTGG-------TTCGC-TTCTATTCAAGCACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTTTTTTT-------------------------GATAACAGAAAAA-CTTGCCTACT-TCGGTAATGTAGATGAATGGCTAAGATCGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGTGA--GGGAGTATTTTT-ATATTTT--------CATCTCT--ATTTTCATCTTGGTCTTTGCATGTTCTGAAGTGATTTATA-----TTTTCATTT-CATTTAT--ATTTTTG------TTTTGTTTTGCCCCTT-TTAGCTTTTATGT---CT-ACCCTTTTCTTCAA-TTTCGTGTCCC--TCTAGTTTTCTC------TTTGTTTTATTGCACT-GGAAATCGTGATAATACTCCATAT-GGT-----TGTTCACGATA--ACTGGCCCCATCAACTTTTGGGACATGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_viscosa_7705_02969 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGATTATCTTAAATTTAACAAACGCCTCCCTCC---AGGAAGGAGGAAAA-CAT--ATGGG--------TTCATGATCTATTGAGCCACT-AAGACTGTTGCC--------GGTTTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------ACTTTTGG-------TTCGC-TTCTATTCAAGAACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCA---CATAGTTTTTTT-------------------------GATAACAGAAGAA-CTTGCCTACT-TTGGTAATGTAGATGAATGGCTAAGATGGAT-AAAAAAGGAAGTCGAACAAATGA----------------GGGAGAGAGCGGGAATATTTTT-AT----------------------ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTTTCATTT-CATTTTC--ATTTTTG------TTTTGTTTTGCCCCTT-GCAGCTTTTATGT---CT-ACTCTTTTCTTCAATTTTCGTGTTCG--TCTACTTTTCTT------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCAGAT-TGC-----TGTTCATGATA--GCTGGCCCCAACAACTTTTGGGACTTGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG Silene_zawadzkii_2447_00555 ACCCCATTTTCCACACCGTCTGTTGAATCCATTACAGAGCAACTTCATAGGTC-TGTATCCCATTTACGACTTC---------------------------------------------------------------------------------------------------------------------------------GTCTTTTGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCYCTGTGGTTTCTGTTTTCTCAGTGATTATCTTAAATTTAGCAAACGYCTCCCTCC---AGGAAGGAGGAAAA-CAT--ATGGG--------TTCATGATCTATTGAGCCACT-AAGACTGTTACC--------GGTKTTAA-TTGATCTGTTGTTTA-AACAGCTGTTTTCTTTGCTCTTACAAGAATCAAAGCCTATACTTGCTC--------ATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTT--------AATTTTGG-------TTCGC-TTCTATTCAMGAACATGCAG--------GTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TGAGGGCAA--CATAGTTTTTTT-------------------------GATAACAGAAAAA-CTTGCCTACT-TTGGTAATGTAGATGAATGGCTAAGATGGAT-AAAAAAGGAAGTCAAACAAATGA----------------GGGAGAGAGCGGGAGTATTTTT-ATATTTT--------CATCTCT--ATTTTCATCTTTG-----ACATGTTCTGAAGTGATTTATA-----TTYTCATTT-CATTTTC--ATTTTTG------TTTTGTTTTGCCCCTT-GCAGCTTTTATGT---CT-ACTCTTTTGTTCAATTTTCGTGTCCG--TCTACTTTTCTT------TTTGTTTTGTTGCACT-GGAAATCATGATAATACTCCAGAT-TGC-----TGTTCAAGATA--GCTGGCCCCAACAACTTTTGGGACTTGCA--TTTATGATCACTCA-ATTGTTGATTGCAGGG ; END; BEGIN CHARACTERS; TITLE RPD2a_indels; DIMENSIONS NCHAR=135; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Atocion_rupestre_13547_FJ383944 ??????????????AAAAACCACAACAAAAAACCACAAAAC??C??C?CAACAC?CAAAAAAAAAAACCAAAAACAAAAAACC???A?C?AAA?CA????AA???CACCCAACACAACAAACAACACA??????? Eudianthe_laeta_1341_AJ634116 AAAACC?AACA?CAAAAAAACACAACAAA?CACAACAACAAA?C??C?CAACAC?CAAAAAAAAC??CCAAC?AACAAAAACACACA?ACAAA??C?????A??CAACACAC?CCAACACACAAAACAAACACCC Lychnis_chalcedonica_2487_619 CA?CAAAAAAAACAA?CAAAAACAACAAA?CACAACAAAAC?AAC?C?CAACAC?CAAAACAAAAACCCAAAAAA??CAAACACAAACACAAACAAAACCAA???CACCCAA?CCAACAAACAACACACA??CAA Lychnis_coronaria_7494_AJ634092 CA?CAACAAAAACAA?CAAACACAACAAA?CACAACAAAAC??C??C?CAACAC?CAAAACAAC???CCAAAAAA??CAAACACAAACACAAACAAAACCAA???CACCCAA?CCAACAAA?CA?ACACA??CAA Lychnis_floscuculi_2406_AJ634114 CA?CAACAAAAACAA?CAAACACACCAAA?CACAACAAAAC??C??C?CAACAACCAAAACAAC???CCAAAAAA??CAAACACAAACACAAACAAAACCAA???CACCCAA?CAAACAAACAACACACA??CAA Lychnis_floscuculi_2406_AJ634115 CA?CAACAAAAACAA?CAAACACACCAAA?CACAACAAAAC??C??C?CAACAAACAAAACAAC???CCAAAAAA??CAAACACAAACACAAACAAAACCAA???CACCCAA?CAAACAAACAACACACA??CAA Lychnis_flosjovis_2506_595 CACAAACAAAAACAA?CAAACACAACAAA?CACAACAAAAC??C??C?CAACAC?CAAAACAAC???CCAAAAAA??CAAACACAAACACAAACAAAACCAA???CACCCAA?CCAACAAA?CA?ACACA??CAA Petrocoptis_pyrenaica_12875_FJ376932 CA?CAC?AC?A??AA?CAAACACAACAAA?CACAACAAAAC??C??C?CAACAC?CAAAAC?C????CCAAACAA?CAAAACACA?C?ACAAAAAAAAC?CA??CAACCCAA?CCACCAAACAACACAAAAAC?? Petrocoptis_pyrenaica_2486_AJ634093 CA?CAC?AC?A??AA?CAAACACAACAAA?CACAACAAAAC??C??C?CAACAC?CAAAAC?C????CCAAACAA?CAAAACACA?C?ACAAAAAAAAC?CA??CAACCCAA?CCACCAAACAACACAAAAACAC Petrocoptis_pyrenaica_2486_AJ634094 CA?CAC?AC?A??AA?CAAACACAACAAA?CACAACAAAAC??C??C?CAACAC?CAAAAC?C????CCAAACAA?CAAAACACA?C?ACAAAAAAAAC?CA??CAACCCAA?CCACCAAACAACACAAAAACAC Silene_ammophila_12639_03484 ?????????????AA?CAAACACAACAAA?CACAACACACAC?C??C?CAA?C??????????????CCAAACAA??CAAACA?CAACACAAACAAAACAAAACAAAACCAA?CCAACAAC?????CAAAAACAC Silene_aprica_7570_00553 CA?CAC?AAAAAAAA?CAAACCCAACAAA?CACAACAAAAC??C??C?CACC?C?CAACAA??????CCAAACAA??CAAACC???A?ACAAACAAAACCAA?CAAACCCAA?CCAACAAACAACACAAAAACAC Silene_conica_O_AJ634145 ?????C?AAAAAAAA?CAAACACAACAAA?CACAACACAAC??C??C?CAA?C??????????????CCAAAAAA??CAAACA?CAACACAAACAAAACAAACCAAAACCAA?CCAACAAACAACACAAAAACAC Silene_coniflora_D_04319 ?????????AAAAAA?CAAACACAACAAA?CACAACACAAC??C??C?CAA?C??????????????CCAAACAA??CAC??A?CAACACAAACAAAACAAACCAAAACCCA?CCAACAAACAACACAAAAACAC Silene_coniflora_M_04323 ?????????AAAAAA?CAAACACAACAAA?CACAACACAAC??C??C?CAA?C??????????????CCAAACAA??CAAACA?CAACACAAACAAAACAAACCAAAACCCA?CCAACAAACAACACAAAAACAC Silene_coniflora_S_04321 ?????????AAAAAA?CAAACACAACAAA?CACAACACAAC??C??C?CAA?C??????????????CCAAACAA??CAAACA?CAACACAAACAAAACAAACCAAAACCCA?CCAACAAACAACACAAAAACAC Silene_coniflora_Z_02980 ?????????AAAAAA?CAAACACAACAAA?CACAACACAAC??C??C?CAA?C??????????????CCAAACAA??CAAACA?CAACACAAACAAAACAAACCAAAACCCA?CCAACAAACAACACAAAAACAC Silene_conoidea_12655_2967 ?????????????AA?CAAACACAACAAACAACAACACAAC??C?AACCAA?C??????????????CCAAACAA??CAAACA?CAAAACAAACAAAACAAACCAAAACCCA?CCAACAAACAACACAAAAACAC Silene_elisabethae_2470_03094 ????????????AAA?CAAACACAACAAA?CACAACAAAAC??C??C?CAAAAC?CAACAAAAC???CCAAACAA??CAAACA?CAACACAAACAAAACAAACCAAACCAAA?CCAACAAACAACACAAAAACAC Silene_elisabethae_2470_03347 ????????????AAA?CAAACAAAACAAA?CACAACAAAAC??C??C?CAAAAC?CAACAAAAC???CCAAACAA??CAAACA?CAACACAAACAAAACAAACCAAACCAAA?CCAACAAACAACACAAAAACAC Silene_fedtschenkoana_12312_04316 ?????C?AAAAAAAA?CAAACCCAAAAAA?CACAACAAAAC??C??C?AACCAC?CAACAAAAC???CCAAACAA??CAAACC???A?ACAAACAAAACCAA?AAAACCCAA?CCAACAAACAACACAAAAACAC Silene_fruticosa_1064_00157 CA?CAC?AAAAACAA??CA?CACAA?CAA?CACAC????????C??C?CAACAC?CAACAAAAC???CCCAACAA??CAAAAAAAAACACAAACAAAAC??C??????CCAA?CCAACAAACAACACAAAAACAC Silene_integripetala_1920_02382 ?A?CAC?AAAAACAA??CA?CACAACAAA?CACAA?C??????C??C?CAACAC?CAA?CAAAC???ACAAA?C???CAAACACAAACACAAACAAAACCAA?CAAACCCAA?CCAACAAAAAACACAAAAAAAC Silene_littorea_2395_02565 ?????C?CAAAACCA??CA?CACAACAAA?CACAA?C??????C??C?CAACAC?CCACAAAAAAC?CCAAACAA??CAAACACAAACACAAACAAAACCAA???CACCCAA?CCAACAAAAAACAACAAACCAC Silene_lydia_L_04365 ????????????AAA?CAAACACAACAAA?CACAACACAAC??C??C?CAA?C??????????????CCAAACAA??CAAACA?CAACACAAA?????????????????????????????????????????? Silene_macrodonta_13984_03138 ?????????????AA?CAAACACAACAAA?CACAACACAAC??C??C?CAA?C??????????????CCAAACAA??CAAACA?CAACACAAACAAAACAAACCAAAACCAA?CCAACAAACAACACAAC??CAC Silene_multinervia_P_01449 ???????AAAAAAAA?CAAACACAACAAA?CACAACAAAAC??C??C?CACCAC?CAACAAAAC???CCAAACAA??CAAACC???A?ACAAACAACACCAA?CAAACCCAA?CCAACAAACAACACAAAAACAC Silene_multinervia_R_04367 ?????????AAAAAA?CAAACACAACAAA?CACAACAAAAC??C??C?CACCAC?CAACAAAAC???CCAAACAA??CAAACC???A?ACAAACAACACCAA?CAAACCCAA?CCAACAAACAACACAAAAACAC Silene_multinervia_S_03093 ?????????AAAAAA?CAAACACAACAAA?CACAACAAAAC??C??C?CACCAC?CAACAAAAC???CCAAACAA??CAAACC???A?ACAAACAACACCAA?CAAACCCAA?CCAACAAACAACACAAAAACAC Silene_nigrescens_KGB217_00544 CA?CAC?AAAAAAAACAAAACCCAACAAA?CACAACAAAAC??C??C?CACCAC?CAACAAAAC???CCAAACAA??CAAACC???A?ACAAACAAAACCAA?CAAACCCAA?CCAA?CAACAACACAAAAACAC Silene_noctiflora_O_00542 CA?CAC?AA?C?????????CACAACAAA?CACAAAAAAAC??C??C?CAA?C??????????????CC?CACAA??CAAACA?CAACACACACAAAAACAA?CAAACCCAAAACAACAAACAACACAAAAACAC Silene_noctiflora_P_4111 ??????????????????????CAACAAA?CACAAAAAAAC??C??C?CAA?C??????????????CC?CACAA??CAAACA?CAACACACACAAAAACAA?CAAACCCAAAACAACAAACAACACAAAAACAC Silene_pendula_12654_03090 ?????????????AC?CAAACACAACAAC?CCCAACAAAAC??C??C?CACCAC?CAACAAAAAC??CCAAACAA??CAAACACAAACA?CAACAAAACCAA?CAAACCCAA?CCAACAAACAACACAAAAACAC Silene_pseudoatocion_7821_FJ376934 ?A?CAC?AAAACCAA??CA?CACAACAAA?CACAA?C?????CAA?C??C?CAC?CAACAACAAAAACCAAACAA??CAAC?ACAAACACAAACAAAC?CAA?CAAC?CCAA?C?CACAAAAAA?CCAAAAACAC Silene_pygmaea_13772_03483 ????????????CAA??CA?CACAACAAA?CACAA?C??????C??C?CAACAC?CAACAAAAC???CCAAACAA??CAAACACAAACACAAACAAAACCAA???CACCCAA?CCAACAAACAACACAAAAACAC Silene_quadriloba_12438_02968 ?????????????AA?CAAACCCAACAAA?CACAACAAAAC??C??C?CACCAC?CAC?AAAAC???CCAAACAA??CAAACC???A?ACAAACAAAACCAA?CAAACCCAA??????????????????????? Silene_schafta_7615_604 CC??AC?AAAAACAA???C?CACAACAAA?CACAA?C??????C??C?CAACAC?AAACAAAAC???CCAAACAA??CAAACACAAACACAAACAAAACCAA???CACCCAA?CCAACAAACAACACAAAAACAC Silene_schafta_7615_605 CC??AC?AAAAACAA??CA?CACAACACA?CACAA?C??????C??C?CAACAC?CAACAAAAC???CCAAACAA??CAAACACAAACACAAACAAAACCAA???CACCCAA?CCAACAAACAACACAAAAACAC Silene_subconica_1033_03495 ???????????AAAA?CAAACACAACAAA?CACAACACAAC??C??C?CAA?C??????????????CCAAACAA??CAAACA?CAACACAACCAAAACAAACCAAAACCAA?CCAACAAACAACACAAAAACAC Silene_turkestanica_12484_3139 ?????????????AA?CAAACACAACAAA?CACAAAAAAAC??C??C?CAA?C??????????????CC?CACAA??CAAACA?CAACACACACAAAAACAA?CAAACCCAAAACAACAAA??C??CAAAAACAC Silene_uniflora_2403_00647 ????AC?AAAAAAAA?CAAACACCACAAAAAACAACAAAAC??C?CAACACCAC?CAACAAAAC???CCAAACAA??CCAACACAAACAAAAACAAAACCAA?CAAACCCAC?CCAACAAACAACACAAAAACAC Silene_viscosa_7705_02969 ????????????AAA?CAAACCCAACAAA?CACAACAAAAC??C??C?CACCAC?CAC?AAAAC???CCAAACAA??CAAACC???A?ACAAACAAAACCAA?CAAACCCAA?CCAACAAACAACACAAAAACAC Silene_zawadzkii_2447_00555 CA?CAC?AAAAAAAA?CAAACCCAACAAA?CACAACAAAAC??C??C?CACCAC?CAACAAAAC???CCAAACAA??CAAACACAAACACAAACAAAACCAA?CAAACCCAA?CCAACAAACAACACAAAAACAC ; END; BEGIN TREES; Title RPD2a_TB; LINK Taxa = TaxaForAnalysisStep6818; TRANSLATE 1 Atocion_rupestre_13547_FJ383944, 2 Eudianthe_laeta_1341_AJ634116, 3 Lychnis_chalcedonica_2487_619, 4 Lychnis_coronaria_7494_AJ634092, 5 Lychnis_floscuculi_2406_AJ634114, 6 Lychnis_floscuculi_2406_AJ634115, 7 Lychnis_flosjovis_2506_595, 8 Petrocoptis_pyrenaica_12875_FJ376932, 9 Petrocoptis_pyrenaica_2486_AJ634093, 10 Petrocoptis_pyrenaica_2486_AJ634094, 11 Silene_ammophila_12639_03484, 12 Silene_aprica_7570_00553, 13 Silene_conica_O_AJ634145, 14 Silene_coniflora_D_04319, 15 Silene_coniflora_M_04323, 16 Silene_coniflora_S_04321, 17 Silene_coniflora_Z_02980, 18 Silene_conoidea_12655_2967, 19 Silene_elisabethae_2470_03094, 20 Silene_elisabethae_2470_03347, 21 Silene_fedtschenkoana_12312_04316, 22 Silene_fruticosa_1064_00157, 23 Silene_integripetala_1920_02382, 24 Silene_littorea_2395_02565, 25 Silene_lydia_L_04365, 26 Silene_macrodonta_13984_03138, 27 Silene_multinervia_P_01449, 28 Silene_multinervia_R_04367, 29 Silene_multinervia_S_03093, 30 Silene_nigrescens_KGB217_00544, 31 Silene_noctiflora_O_00542, 32 Silene_noctiflora_P_4111, 33 Silene_pendula_12654_03090, 34 Silene_pseudoatocion_7821_FJ376934, 35 Silene_pygmaea_13772_03483, 36 Silene_quadriloba_12438_02968, 37 Silene_schafta_7615_604, 38 Silene_schafta_7615_605, 39 Silene_subconica_1033_03495, 40 Silene_turkestanica_12484_3139, 41 Silene_uniflora_2403_00647, 42 Silene_viscosa_7705_02969, 43 Silene_zawadzkii_2447_00555; TREE RPD2a_MB_con_50_majrule = (1:0.069959,((3:0.020786,((4:0.00477,7:0.006165)1.00:0.010366,(5:0.005865,6:0.006052)1.00:0.028492)0.69:0.002782)1.00:0.030269,((((((12:0.006984,(21:0.011955,30:0.009591)0.84:0.002345,(36:0.00173,42:0.003997)1.00:0.008057)0.94:0.003228,43:0.005825)1.00:0.015332,((33:0.032451,41:0.029204)0.98:0.00493,(27:0.001303,29:0.001312,28:0.001318)1.00:0.023583)0.71:0.002587)0.88:0.004889,((19:0.003295,20:0.004626)1.00:0.013797,(((31:0.002883,32:0.001583)1.00:0.004344,40:0.007399)1.00:0.020641,((11:0.0228,(13:0.008439,39:0.011255)0.97:0.003856,((17:0.004194,(14:0.002811,16:0.001414)0.99:0.002771,15:0.001387)1.00:0.009221,18:0.017157)1.00:0.006552,26:0.016018)0.99:0.009289,25:0.026067)1.00:0.019084)0.99:0.006757)1.00:0.006106)0.73:0.007311,23:0.054485)0.77:0.007942,(22:0.03874,(((24:0.047842,37:0.010529)0.87:0.004762,(35:0.014704,38:0.009303)1.00:0.011466)0.83:0.008197,34:0.077844)0.88:0.007055)1.00:0.009983)1.00:0.012436)1.00:0.031595,(2:0.104815,(9:0.002586,(10:0.002371,8:0.009848)0.87:0.002296)1.00:0.039792)0.63:0.007768); TREE RPD2a_BS_PAUP_1 = (1,(2,(9,(10,8)64)100)56,((3,((4,7)100,(5,6)100)93)100,(((((12,(21,30)69,(36,42)99)71,43)100,((33,41)88,(27,29,28)100)55)73,((19,20)100,(((31,32)92,40)100,((11,(13,39)84,((17,(14,16)62,15)99,18)95,26)89,25)95)78)90)70,((22,24,34,(35,38)99,37)74,23)52)95)100)0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = RPD2a_dna) = unord: 1 - 2013; TYPESET * UNTITLED (CHARACTERS = RPD2a_indels) = unord: 1 - 135; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = RPD2a_dna) = universal: 1 - 2013; CODESET * UNTITLED (CHARACTERS = RPD2a_indels) = universal: 1 - 135; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = RPD2a_dna) = 'Jukes-Cantor': 1 - 2013; ProbModelSet * UNTITLED (CHARACTERS = RPD2a_indels) = 'Jukes-Cantor': 1 - 135; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1295559581558; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1593130532372409310; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5726460097536429817; mqVersion 273; checksumv 0 2 2137261052 null getNumChars 2013 numChars 2013 getNumTaxa 43 numTaxa 43 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 778157.0 sumSquares -8.301034833169298E19 NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; setID 1 4633213404847695797; mqVersion 273; checksumv 1 2 1050916544 null getNumChars 135 numChars 135 getNumTaxa 43 numTaxa 43 short true bits 3 states 3 sumSquaresStatesOnly 9414.0 sumSquares 9414.0 NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 329; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;