#NEXUS [written Thu Jan 20 16:45:58 EST 2011 by Mesquite version 2.73 (build 544) at dhcp128036177160.central.yale.edu/128.36.177.160] BEGIN TAXA; TITLE taxa; DIMENSIONS NTAX=45; TAXLABELS Atocion_rupestre_13547_FJ383961 Eudianthe_laeta_1341_581 Lychnis_chalcedonica_2487_00618 Lychnis_coronaria_7494_AJ634144 Lychnis_floscuculi_2406_AJ634113 Lychnis_flosjovis_2506_00596 Lychnis_flosjovis_2506_00597 Petrocoptis_pyrenaica_12875_FJ376961 Silene_ammophila_12639_03488 Silene_aprica_7570_00550 Silene_aprica_7570_00551 Silene_aprica_7570_00552 Silene_conica_O_AJ634146 Silene_coniflora_D_04320 Silene_coniflora_S_04322 Silene_coniflora_Z_04324 Silene_conoidea_12655_2967 Silene_diclinis_DIC_7_a2952 Silene_diclinis_DIC_7_c4593 Silene_dioica_D184_24_2950 Silene_elisabethae_2470_02981 Silene_fedtschenkoana_12132_04317 Silene_heuffelii_H4_6_2960 Silene_latifolia_L121_9_03149 Silene_latifolia_L170_10_g2958 Silene_latifolia_L170_10_t4598 Silene_latifolia_L200_2_03154 Silene_latifolia_L81_9_04115 Silene_macrodonta_13984_03160 Silene_marizii_M4_1_a2963 Silene_marizii_M4_1_g2963 Silene_multinervia_P_01450 Silene_multinervia_R_04371 Silene_multinervia_S_02970 Silene_nigrescens_KGB217_00543 Silene_nigrescens_KGB217_01304 Silene_noctiflora_O_541 Silene_noctiflora_P_04116 Silene_pendula_12654_02966 Silene_quadriloba_12438_03585 Silene_subconica_1033_03497 Silene_turkestanica_2369_04 Silene_uniflora_2403_00646 Silene_viscosa_7705_02969 Silene_zawadzkii_2447_556 ; END; BEGIN CHARACTERS; TITLE RPD2b_dna; DIMENSIONS NCHAR=758; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Atocion_rupestre_13547_FJ383961 ACCGAAACCTTACTGTG-----TTTTTCTGGTCTCTGTTGTTTATGTTTTCTCGGTGATT--------ATCTTAAC-TTAGATAATGCCTCCC-TCCAGGAAGGTAGAAAACATTAATGTGTTCATGATC----TATTGTGCCACT----TAAATT------ATTATTGATTTTGATTCATCTATA-TCTCTAAACAGTAGACTTCTTTGCCTCTCACAATAGTCAAAAACTGTACTTACCCATTT-GTATA--------------TGTTCACTTTTGGTTTGGTTTCTTTTCAAGCACTTGGGGG-----------TGAAA--TGAAAGAGGGCAAAAGAGTCTTTT---ATTACAGAAAAA---CTTACCTACCGTGAAAA-TGTAGATGAATGGCT-AGATGGAT-----AAGTAAACGATGACAAACAAATAAG---------------------TTATCTT----TGTATTTTCA-CCTCTATTCCCATCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTGTTGTTTTCCCTCTT---GCACCTCGTATTTCTGCTCCA-ATCTTGTAAGATATTCTCCTTTTATTTTCGTGCCCCTACTTTTGTCTTT-GTTTTGTTGCATCCGAAATCAAAAAAACGTTTC-------ATAT-GGCTATTCATTATAGCTGGTCCCAACTATT-------ATTGGGACTAATGCGGTCAGTCACTTAACTGTTGGTTGCAGG Eudianthe_laeta_1341_581 AGG-AAACCGT-----------------------------------------------------------------------------------------------------------------------------------AACT-ATTAGTCCT------TTT---GATTTTGATTCATCTAATGT--TTAGACAACAGACTTCTTTG-CTGTCACAAGAGTCAAA--CTGTACCCACCTATTT-TTATA--------------GATTCACTTTTGGTCCGG-TTCTTTTCAAGCACATGGAGG-----------TGAGA--TGAAAGAGGGCAAAAGAGTCTTTT---ATTACAGCAAAA---CTTAACTAGGGTGGAAA-TGTCGATGAATGGGCTAGATGGAT-----ATATAAACGATGACAAACGAAGGAGTTA------------------TTATCTT----AGTATTTTCA-CCTTAATTTTCATCTTTGGTACATTCTGAACCGAATTCAA----ATTT-CA----------TATTGGTTTTCCATCTTACCGTACCTCGTATT-CTACTCAA-ATTTTCTAAGATTTTTTTTTTTTTTTTTTTCCCC---------------------GTKGCTTCCAAAATCTCAAAAACTTTT---------------------ATTACAGCTGGTCCCAACAATT-------ATCGGGACTAATGCGG-CAATCGCTAAACTGTTGATTGCAGG Lychnis_chalcedonica_2487_00618 AGG-AAACCTTGTTGTG-------TTTTTTGTTTTTGTTGTTTATGTTTTCTCAGTGATT--------ATCTTAAC-TTAGCAAATGCCTCCC-TCCAGGAATGTAGAAAACATAAATGTGATCATGATC----TATTGCGCCACT-AAAACTATT------ATT---AATTTTGATTCAACTATAGTGCTTCAACAGCAGACTTCTTTG-CTCTTACAAGAGTCAAAAACTGTACTCATCCATTT-GTATA--------------CTTTCACTTTTGATACAGTTTCTTTTCAAGCACATGGAAG-----------TGAGA--TAAAAGAGGGCAAAAGAGTCATTT---ATTACATAATAA---CTTACCTACGGTGGCAA-TGTAGATGAATTACAA---TGTATAAAATAAATAAACGATGACAAACAAATGAG---------------------TTATCTT----TGTATTTTCA-----TAATTTCATCTTTGGCACGTTCTGAAGCAAACTCAA----ATTTTCA----------TTTTTGTTTTCCCT-------AACCTCGTATTTCTGCTCTT-ATCTTCTAGAATTTTCTCCTTTTATTTTCGTGCC----CTTTTGTCTTTTGTTTTGTTGCATCCGAAATCAAAATAACATTCCATAATCCATAT-GGCTATTCATTGTTGCTGGCCCCAACTATT-------ATTGGGGCTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG Lychnis_coronaria_7494_AJ634144 AGG-AAACCTTACTGTG-------TGTTTTGTTTCTGTTGTTTATGTTTTCTCAGTGATT--------ATCTTAAC-TTAGCAAATGCCTCCC-TCCAGGAATGTAGAAAGCATAAATGTGATCATGATC----TATTGCGCCACT-AAAACTATTACAG-TATT---ATTCTTGATTCAACTGTAGTGTTTCAACAGCAGACTTCTTTG-CTCTTAGAAGAGTCAAAAACCGTACTCATCCATTT-GTATA--------------CGTTCACTTTTGGTACAGTTTCTTTTCAAGCACATGGAGG-----------TGAGATAAAA--GAGGGCAAAAGAGTCATTT---ATTACAGAAAAA---CTTACCTGCGGTGGCAA-TGTAGATGAATTACAA---TGTAT-----AAATAAACTATGACAAACAAATGAG---------------------TTATCTT----TGTATTTTCA-----TAATTGCATCTTTGGCACGTTCTGAAGCAAACTCAA----ATTTTCA----------TTTTTGTTTTCCCT-------AACCTCGTATTTTTGCTCTT-ATCTTCTAGGATTTTCTCCTTTTATTTCCGTGCCCCTACTTTTGTCTTT-GTTTTGTTGCATCCGAAATCAAAATAACATTCCATAATCCATAT-GGCTACTCATTGTTGCTGGCCCCAACTATT-------ATTGGGGCTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG Lychnis_floscuculi_2406_AJ634113 AGG-AAACCTTACTGTG----------TTTTTTGTTTCTGTTTATGTTTTCTCAGTGATT--------ATCTTAAC-TTAGCCAATGCCTCCC-TCCAGGAATGTAGAAAACATAAATGTGATCATGATC----TATTGCGCCACT-AAAACTATT------ATT---AATTTTGATTCAACTATAGTGTTTCAACAGCAGATTTCTTTG-CTCTTACAAGAGTCAAAAACTGCACTCGTCCATCT-GTATA--------------CGTTCACTTTTGATACAGTTTCTTTTCAAGCACATGGAGG-----------TGAGA--TAAAAGAGGGCAAAAGAGTCATTT---ATTACAGAAAAA---CTTACCTACGGTGGCAA-TGTAGATGGATTACAA---TGTAT-----AAATAAACGATGACAAACAAATGAG---------------------TTATCTT----TGTATTTTCG-----TAATTTCATCTTTGGCACGTTCTGAAGCAAA?TCAA----TTTTTCA---------TTTTTTGTTTTCCCT-------AACCTCGTATATCTGCTCTT-ATCTTCTAGGATTTTCTCCTTTTATTTTCTTGCCCCTACTTTTGTCTTT-GTCTTGTTGCATTCGAAATCAAAATAACATTCCATAATCCATAT-GGCTATTCATTGTTGCTGGCCCCAACTATT-------ATTGGGGCTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG Lychnis_flosjovis_2506_00596 AGG-AAACCTTACTGTG-------TTTTTTGTTTCTGTTGTTTATGTTTTCTCAGTGATT--------ATCTTAAC-TTAGCAAATGCCTCCC-TCCAGGAATGTAGAAAGCATAAATGTGATCATGATC----TATTGCGCCACT-AAAACTATTACAG-TATT---ATTTTTGATTCAACTATAGTGTTTTAACAGCAGACTTCTTTG-CTCTTACAAGAGTCAAAAACCGTACTCATCCATTT-GTATA--------------CGTTTACTTTTGGTACAATTTCTTTTCAAGCACATGGAGG-----------TGAGA--TAAAAGAGGGCAAAAGAGTCATTT---AATACAGAAAAA---CTTACCTGCGGTGGCAA-TGTAGATGAATTACAA---TGTAT-----AAATAAACGATGA---------------------------------CTATCTT----TGTATTTTCA-----TAATTGCATCTTTGGCACGTTCTGAAGCAAACTCAA----ATTTTCA----------TTTTTGTTTTCCCT-------AACCTCGTATTTTTGCTCTT-ATCTTCTAGGATTTTCTCCTTTTATTTCCGTGCCCCTACTTTTGTCTTT-GTTTTGTTGCATCCGAAATCAAAATAACATTCCATAATCCATAT-GGCTATTCATTGTTGCTGGCCTCAACTATT-------ATTGGGGCTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG Lychnis_flosjovis_2506_00597 AGG-AAACCTTACTGTG-------TTTTTTGTTTCTGTTGTTTATGTTTTCTCAGTGATT--------ATCTTAAC-TTAGCAAATGCCTCCC-TCCAGGAATGTAGAAAGCATAAATGTGATCATGATC----TATTGCGCCACT-AAAACTATTACAG-TATT---ATTTTTGATTCRACTATAGTGTTTTAACAGCAGACTTCTTTG-CTCTTACAAGAGTCAAAAACCGTACTCATCCATTT-GTATA--------------CGTTTACTTTTGGTACAATTTCTTTTCAAGCACATGGAGG-----------TGAGA--TAAAAGAGGGCAAAAGAGTCATTT---AATACAGAAAAA---CTTACCTGCGGTGGCAA-TGTAGATGAATTACAA---TGTAT-----AAATAAACGATGACAAACAAATGAG---------------------TTATCTT----TGTATTTTCA-----TAATTGCATCTTTGGCACGTTCTGAAGCAAACTCAA----ATTTTCA----------TTTTTGTTTTCCCT-------AACCTCGTATTTTTGCTCTT-ATCTTCTAGGATTTTCTCCTTTTATTTCCGTGCCCCTACTTTTGTCTTT-GTTTTGTTGCATCCGAAATCAAAATAACATTCCATAATCCATAT-GGCTATTCATTGTTGCTGGCCTCAACTATT-------ATTGGGGCTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG Petrocoptis_pyrenaica_12875_FJ376961 AGG-AAACCTTATTGKG------TTTTTTTGTCTC----TGTTATGTTTTCTCTGTGATT--------ATCTTAAC-TTAGCAGATGCCTCCT-TCCAGAAAGGTAGAAAACATAAATGTGTGCATGATC----TACTGCGCCACT-AAAACTGTTACTCATATT---GATTTTGATTCATCTGGAGTGTTTAAACAGCAGACTTCTTTG-AACTCACAGGAGTCAAAAACTGTATTCACCCATTT-GTATTCACCCATTTGTATTCATTCACTTTTGGTTCCG-TTCTTTTCAAGCGCGTGGAGG-----------TGAGA--CGAAAGAGGGCAAAAGAGTCTTTT---ATTACAGAAAAA---CTTACCTACGGTGGAAA-TATAGATGAATGGCT-AGATGGAT-----AAATAAACGATGACAAACAAATGTG---------------------TTATCTC----TGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTGATTTTCCCTCTT---GCACCTCGTATTTCTGCTCTA-ATC-TCTAAG---TTCTCCTTTTATTTTTGTGCCC-TACTTTTGTCTTT-GTTTTGTTGCACCCGAA-TCACAAAAACATTCC-------ATAT-GGCTAGTTATTATAGC--CCCCCAACTATT-------ATTGGGACTAATGCGGGCAGTCATTTAACTGTTTATTGCAG? Silene_ammophila_12639_03488 ??????????????????????????????????????????????TTTTTTCAGTGATCGTCTATTCGTCTTAAC-TTAGCAAATGCC-----TCCAGGAAAGTAGAAAACATAAATGTGTTCATGATC----TATTGCACCCCT-AAGACTATT------------GGTTTTGATTCATCTATAGT------ACATCAGACTTCTTTG-CTCTCACAATAGTTAAATACTGTACTCGTGCATTT-GTATA--------------CGTTCACTTC-GGTGCAATTTCTTTAAAAGCGCATGGAGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTTT---ATTGCAAAAAAAAAACTA--------------------------------------------AAATAAAAGATGACGAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TCTTTGGCACTTTCTGAAGTAAATTCAA----ATTTTCA----------TTTTTGTTTTCCTTCTT---GCACCTCGTATTTCGGCTCTT-ATCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCAACTTTTTTCT---GTGTTGCCCCAA-----------------------------------CTGTTCACTATTGGTGTCCCCAACTATT-------ATTGAGACTGATGCAGTCAGTCACTTAACTGTTGATTGCAGG Silene_aprica_7570_00550 AGG-AAACCTTATTGTG---------TTTTGTCTCTGTTGTTTATTCTTTCTCAGGGATT--------ATCTTACC-TTAGCAAATGCCTCCC-TCCAGGAAGGTRGAAAACATAGRTGTGTTCATGATC----TATTGCTCCACT-AAAACTATT------ATT---GATTT-GATTCATCTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTGACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------C--TCACTTTTGGTTCGGYTTCTTTTAAAGCACGTGGGGG-----------TGAGAGATCAAAGAGGGCAAAAGATTCTTCT---ATTACAGAAAAA---CTTACCTATGGTGGAAA-TGTAGGTGARTGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTACCTT----TGTATTTTCA-------------TCTTTGGCACGTTCTGAAACAAATTTGA----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACCTCGTATTTCTGCTCTT-TTCTTCCAAGATTTTCYCCTTTTATTTTTGTGCCCCTACTTTTGTCTTT-GTGTTGTTACATCCGAAATCACAATAACATTCC-------ATAT-GGCTATTCATTTTAGCTAGCCCCAACTATT-------ATTGGGAATAATGCGGTCAGCCACTTAACTGTTGATTGCAGG Silene_aprica_7570_00551 AGG-AAACCTTATTGTG---------TTTTGTCTCTGTTGTTTAYGCTTTCTCAGGGATT--------ATCTTACC-TTAGCAAATGCCTCCC-WCCAGGAAGGTAGAAAACATAGATGTGTTCATGATC----TATTGCTCCACT-AAAACTATT------ATT---GATTT-GATTCATCTATAGTG-------------CTTCTTTG-CTCTGACAAGAGTCAAAAACTTTACTCACCCATTT-GT-----------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACGTGGGGG-----------TGAGAGATCAAAGAGGGCAAAAGAGTCTTCT---ATTACAGAAAAR---CTTACCTATGATGGAAA-TGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTACCTT----TGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTTGA----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACCTCGTATTTCTGCTCTT-TTCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCTTT-GTGTTGTTACATCCGAAATCACAATAACATTCC-------ATAT-GGCTATTCATTTTAGCTAGCCCCAACTATT-------ATTGGGACTAATGCTGTCAGTCACTTAACTGTTGATTGCAGG Silene_aprica_7570_00552 AGG-AAACCTTATTGTG---------TTTTGTCTCTGTTGTTTATGCTTTCTCAGGGATT--------ATCTTACC-TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAACACATGC--------------------------------AAACTATT------ATT---GATTT-GATTCATCTATAGTGCTTAAACAGCAGACTTCTTTG-CTTTGACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCTGTTTCTTTTAAAGCACGTGGGGGG----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTCT---ATTACAGAAAAA---CTTACCTATGGTGGAAA-TGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTACCTT----TGTATTTTCA-------------TCTTTGGCACGTTCTGAAACAAATTTGA----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACCTCGTATTTTTACTCTT-TTCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCTTT-GTGTTGTTACATCTGAAATCAGAATAACATTCC-------ATAT-GGCTATTCATTATAGCTAGCCCCAACTACT-------ATTGGGACTAATGCGGTCAGTCGCTTAACTGTTGATTGCAGG Silene_conica_O_AJ634146 ???????CCTTATTGCA-------TTTTTTTTCTCTGTTATTTATGTTTTTTCAGTGATCGT----AACTCTTAAC-TTAGCAAATGCC-----TCCAGGAAAGTAGAAAACGTAAATGTGTTCATGATC----TATTGCGCCACT-AAGACTACT------ATT---GGTTTTGATTCATCTATAGT------ACATCAGACTTCTTTG-CTCTCACAAGAGTTAAAAACTGTACTCGCGCATTT-GTATA--------------CGTTCACTTT-GGTGCAGTTTCTTTTAAAGCGCATGGAGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTTT---ATTGCAGAAAAA---CTT--------------------------------------------CAATAAAAGATGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TCTTTGGCACTTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCTTCTT---GCACCTCGTATTTCTGTTCTC-ATCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCAACTTTTTTCTTT-GTGTTGCCCCAA----------------------------------------------------------CTATT-------ATTGAGACTAATGCGGTCAGCCACTCAACTGTTGATTGCAGG Silene_coniflora_D_04320 ????????????????????????TTTCTTTTCTCTGTTATTTATGTTTTTTCAGTGATC--------GTCTTAAC-TTAGCAAATGCCTCCG-TCCAGGAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACTTAAGACTATT------ATT---GGTTTTGATTCATCTATAGT------ACATCAGACTTCTTTG-GTCTCACAAGAGTTAAAAACTGTACTCGCGCATTT-GTATA--------------CGTTCACTTT-GGAGCAGTTGCTTTTAAAGCGCATGGAGG-----------TGAGAGATAAAAGAAGGCAAAAGAGTCTCTT---ATAGCAGAAAAA---CTT--------------------------------------------AAATAAAAGATGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TCTTTGGCACTTTCTGAAGCAAATTCAA----AATTTCA----------TTTTTGTTTTGCTTCTT---GCACCTGGTATTTCTGCTCTT-ATCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCGTT-GTGTTGTTACATCCGAAATCACAATAACATTCC-------ATAT-GGCTATTCATTATAGCTGGCCCCAATTATCATTGAGAATTGAGACTAATGCGGTCAGTCACTTAATTATTGATTGCAGG Silene_coniflora_S_04322 ????????????????????????TTTCTTTTCTCTGTTATTTATGTTTTTTCAGTGATC--------GTCTTAAC-TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACTTAAGACTATT------ATT---GGTTTTGATTCATCTATAGT------ACATCAGACTTCTTTG-GTCTCACAAGAGTTAAAAACTGTACTCGCGCATTT-GTATA--------------CGTTCACTTT-GGAGCAGTTGCTTTTAAAGCGCATGGAGG-----------TGAGAGATAAAAGAAGGCAAAAGAGTCTCTT---ATAGCAGAAAAA---CTT--------------------------------------------AAATAAAAGATGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TCTTTGGCACTTTCTGAAGCAAATTCAA----AATTTCA----------TTTTTGTTTTGCTTCTT---GCACCTGGTATTTCTGCTCTT-ATCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCGTT-GTGTTGTTACATCCGAAATCACAATAACATTCC-------ATAT-GGCTATTCATTATAGCTGGCCCCAATTATCATTGAGAATTGAGACTAATGCGGTCAGTCACTTAATTGTTGATTGCAGG Silene_coniflora_Z_04324 ????????????????????????TTTCTTTTCTCTGTTATTTATGTTTTTTCAGTGATC--------ATCTTAAC-TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACTTAAGACTATT------ATT---GGTTTTGATTCATCTATAGT------ACATCAGACTTCTTTG-GTCTCACAAGAGTTAAAAACTGTACTCGCGCATTT-GTATA--------------CGTTCACTTT-GGAGCAGTTCCTTTTAAAGCGCATGGAGG-----------TGAGAGATAAAAGAAGGCAAAAGAGTCTTTT---ATAGCAGAAAAA---CTT--------------------------------------------AAATAAAAGATGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TCTTTGGCACTTTCTGAAGCAAATTCAA----AATTTCA----------TTTTTGTTTTGCTTCTT---GCACCTGGTATTTCTGCTCTT-ATCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCGTT-GTGTTGTTACATCCGAAATCACAATAACATTCC-------ATAT-GGCTATTCATTATAGCTGGCCCCAATTATCATTGAGAATTGAGACTAATGCGGTCAGTCACTTAATTGTTGATTGCAGG Silene_conoidea_12655_2967 ?????????????????????????????????????????????GTTTTTTCAGTGATC--------CTCTTAAC-TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAAAACATAAATGTGCTCATGATC----TATTGCGCCACTTAAGACTATT------ATT---GGTTTTGATCCATCTATAGT------ACATCAGACTTCTTTG-CTCTCACAAGAGTTAAAAACTGTACTCGCTCATTT-GTATA--------------CGTTCACTTT-GGTGCAGTTTCTTTTAAAGCGCATGGAGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTTT---ATTGCAGAAAAA---CTT--------------------------------------------AAATAAAGGATGACAAACAAATGAG---------------------CTGTCTT----TGTATTTTCA-------------TCTTTGGCACTTTCTGAAGCAAATTCAA----AATTTCA----------TTTTTGTTTTCCTTCTT---GCACCTTGTATTTCTGCTCTT-ATGTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCTTT-GTGTTGTTACATCCGAAATCACAATAACATTCC-------ATATGGGCTATTCATTATAGCTGGCCCCAACTATTACTGAGAATTGAGACTAATGCGGTCAGTCACTTAATTGTTGATTGCAGG Silene_diclinis_DIC_7_a2952 AGG--AACCTTG--GTG----TTTTTTTTTTT--------------TTTGGTCAGTGATT--------GTCTTTCC-TTAGCAAATGCCTCCC-TCCAGTAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCGTTTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACATGGAGT-----------TGAGAGATGAAAGAGAGCAAAAGAGTCTTTT---ATTACAGAAAAA---CTTACCTATGGTGGAAAATGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----GGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTCCA----------TATTTGTTTTCCCTCTT---GCACCTCATATTTCTGCTCTTTATCTTCTAAGA--TTCTCTTTTTATTTCCGAGTGCCTAATTTTGTCTTT-GTTTTGTTGCCTCTGAAATCACAAGAACATTCC-------ATAG-GGCTATTCATTATAGCTGTCCGTAAC????????????????????????????????????????????????????? Silene_diclinis_DIC_7_c4593 AGG--AACCTTG--GTG----TTTTTTTTTTT--------------TTTGGTCAGTGATT--------GTCTTTCC-TTAGCAAATGCCTCCC-TCCAGTAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCGTTTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTCACAAGAGTCCAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACATGGAGT-----------TGAGAGATGAAAGAGAGCAAAAGAGTCTTTT---ATTACAGAAAAA---CTTACCTATGGTGGAAAATGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----GGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTCCA----------TATTTGTTTTCCCTCTT---GCACCTCATATTTCTGCTCTTTATCTTCTAAGA--TTCTCTTTTTATTTCCGAGTGCCTAATTTTGTCTTT-GTTTTGTTGCCTCTGAAATCACAAGAACATTCC-------ATAG-GGCTATTCATTATAGCTGTCCGTAAC????????????????????????????????????????????????????? Silene_dioica_D184_24_2950 AGG--AACCTTG--GTG--TTTTTTTTTTTTT--------------TTTGGTCAGTGATT--------ATCTTTCC-TTAGCAAATGCCTCCC-TCCAGTAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCGTTTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACATGGAGT-----------TGAGAGATGAAAGAGAGCAAAAGAGTCTTTT---ATTACAGAAAAA---CTTACCTATGGTGGAAAATGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAA---------------------TTGTCTT----GGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCCTCTT---GCACCTCATATTTCTGCTCTTTATCTTCTAAGA--TTCTCTTTTTATTTCGGAGTGCCTAATTTTGTCTTT-GTTTTGTTGCCTCTGAAATCACAAGAACATTCC-------ATAG-GGCTATTCATTATAGCTGTCCCTAAC????????????????????????????????????????????????????? Silene_elisabethae_2470_02981 ??????????????????????????????????????????????????????GTGATT--------ATCTTAAC-TTAGCAACTGCCTTCC-TCCAGGAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCACCACT-AAAACTATT------ATT---GATTTTGATTCATCTATAGTGCTTAAACAGCGGACTTCTTTA-CTCTCACAATAGTCGTAAACTCTGTTC----ATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAACACATGGAGGTGAGAATACCGTGAGA--TGAAAGAGGGCAAAAGAGTCTTTT---ATTACAGAAAAA---CTTACCTATGGTGGAAA-TGTAGATGAATGGCTAAGATGGAA-----AAATAAATGATGACAAACAAATGAT---------------------TTATCTT----TGTATTTTCATCTTGTATTTTCATCTTCGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCCTCTT---GCACCTCGTATTTCTGCTYTT-ATCTTCTAAGATTCTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCTTT-GTGTTGTTGCATCCGAAATCACAATAACATTCC-------TTAT-GGCTATTCATTATAGCTGGCCCCAACTATT-------ATTGGGACTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG Silene_fedtschenkoana_12132_04317 ??????????????????????????TTTTGTCTCTGTTGTTTATGCTCTCTCAGGGATT--------ATCTTACC-TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAAAACATAGATGTGTTCATGATC----TATTGCTCCACT-AAAACTATT------ATTATTGATCT-GATTCATCTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTGACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCTGTTTCTTTTAAAGCACGTGGGGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTCT---ATTACAGAAGAA---CTTACCTATGGTGGAAA-TGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTACCTT----TGTATTTTCA-------------TCTTTGGCACGTTCTGAAACAAATTTTC----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACCTCGTATTTCTGCTCTT-TTCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCGTACTT--GTCTTT-GTGTTGTTACATTCAAAATCACAATAACATTCC-------ATAT-GGCTATTCATTTTAGCTAGCCCCAACTATT-------ATTGGGACTAATGCGGTCAGTCACTTAACTGTTGATTGCAG? Silene_heuffelii_H4_6_2960 ?????AACCTTA--GTGTTTTTTTTTTTTTTTCTCTGTTGTTTATGTTTTCTCAGTGATT--------ATCTTTCC-TTAGCAAATGCCTCCC-TCCAGTAAGGTAGAAAACATAAATGTGTACATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCATCTACAGTGCTTAAACAGCAGACTTCTTTG-CTCTCACAAGAGTAAAAAACTGTACTCACCCATTT-GTTTA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACATGGAGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTTT---ATTACAGAAAAA---CTTACCTATGATGGAAAATGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTTCCTCTT---GCACCTCGTATTTCTGCTCTTTATCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCTTT-GTGTTGTTGCATCCGAAATCACAATAACATTCC-------ATAT-GGCTATTCATTATAGCTGGCCCCAAC????????????????????????????????????????????????????? Silene_latifolia_L121_9_03149 ??????????????????????TTTTTTTTTT--------------TTTGGTCAGTGATT--------ATCTGTCC-TTAGCAAATGCCTCCC-TCCAGTAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCGTTTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACATGGAGT-----------TGAGAGATGAAAGAGAGCAAA--AGTCTTT----ATTACAGAAAAA---CTTACCTATGGTGGAAAATGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----GGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCCTCTT---GCACCTCATATTTCTGCTCTTTATCTTCTAAGA--TTCTCTTTTTATTTCGGAGTGCCTAATTTTGTCTTT-GTTTTGTTGCCTCTGAAATCACAAGAACATTCC-------ATAG-GGCTATTCATTATAGCTGTCCCTAAC????????????????????????????????????????????????????? Silene_latifolia_L170_10_g2958 AGG--AACCTTG--GTG---TTTTTTTTTTTT--------------TTTGGTCAGTGATT--------ATCTTTCC-TTAGCAAATGCCTCCC-TCCAGTAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCGTTTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACATGGAGT-----------TGAGAGATGAAAGAGAGCAAAAGAGTCTTTT---ATTACAGAAAAA---CTTACCTATGGTGGAAAATGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----GGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCCTCTT---GCACCTCATATTTCTGCTCTTTATCTTCTAAGA--TTCTCTTTTTATTTCGGAGTGCCTAATGTTGTCTTT-GTTTTGTTGCCTCTGAAATCACAAGAACATTCC-------ATAG-GGCTATTCATTATAGCTGTCCCTAAC????????????????????????????????????????????????????? Silene_latifolia_L170_10_t4598 AGG--AACCTTG--GTG---TTTTTTTTTTTT--------------TTTGGTCAGTGATT--------ATCTTTCC-TTAGCAAATGCCTCCC-TCCAGTAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCGTTTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACATGGAGT-----------TGAGAGATGAAAGAGAGCAAAAGAGTCTTTT---ATTACAGAAAAA---CTTACCTATGGTGGAAAATGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----GGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCCTCTT---GCACCTCATATTTCTGCTCTTTATCTTCTAAGA--TTCTCTTTTTATTTCGGAGTGCCTAATTTTGTCTTT-GTTTTGTTGCCTCTGAAATCACAAGAACATTCC-------ATAG-GGCTATTCATTATAGCTGTCCCTAAC????????????????????????????????????????????????????? Silene_latifolia_L200_2_03154 ?????????????????????TTTTTTTTTTT--------------TTTGGTCAGTGATT--------ATCTGTCC-TTAGCAAATGCCTCCC-TCCAGTAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCGTTTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACATGGAGT-----------TGAGAGATGAAAGAGAGCAAAAGAGTCTTTT---ATTACAGAAAAA---CTTACCTATGGTGGAAAATGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----GGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCCTCTT---GCACCTCATATTTCTGCTCTTTATCTTCTAAGA--TTCTCTTTTTATTTCGGAGTGCCTAATTTTGTCTTT-GTTTTGTTGCCTCTGAAATCACAAGAACATTCC-------ATAG-GGCTATTCATTATAGCTGTCCCTAAC????????????????????????????????????????????????????? Silene_latifolia_L81_9_04115 AGG-AAACCTTG--GTG--TTCTTTTTTTTTT--------------TTTGGTCAGTGATT--------ATCTTTCC-TTAGCAAATGCCTCCC-TCCAGTAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCGTTTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACATGGAGT-----------TGAGAGATGAAAGAGAGCAAAAGAGTCTTTT---ATTACAGAAAAA---CTTACCTATGGTGGAAAATGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----GGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCCTCTT---GCACCTCATATTTCTGCTCTTTATCTTCTAAGA--TTCTCTTTTTATTTCGGAGTGCCTAATTTTGTCTTT-GTTTTGTTGCCTCTGAAATCACAAGAACATTCC-------ATAG-GGCTATTCATTATAGCTGTCCCTAACAATT-------ATTGGGACTAATGCCGTCACTCACTCAATTATTGATTACAGG Silene_macrodonta_13984_03160 ????????????????????????????????????????????????????CAGTGATCGTCT-TAACTCTTAAC-TTAGCAAATGCC-----TCCAGGAAAGTAGAAAACGTAAATGTGTTCATGATCGATCTATTGCGCTACT-AAGACTACT------ATT---GGTTTTGATTCATCTATAGT------ACATCAGCCTTCTTTG-CTCTCACAAGAGTTAAAAACTGTACTCACGCATTT-GTATA--------------CGTTCACTTT-GGTGCAGTTTCTTTTAAAGCGCATGGAGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTTT---ATGGCAGAAAAA---CTT--------------------------------------------AAATAAAAGATGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TTTTTCGCACTTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCTTCTT---GCACCTCGTATTTCTGCTCTT-ATCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCAACTTTTTTCTTT-GTGTTGTCCCAA-----------------------------------CTGTTCATTATAGGTGGCCCCAACTATT-------ATTGAGACTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG Silene_marizii_M4_1_a2963 ?????AACCTTG--GTG------TTTTTTTTT--------------TTTGGTCAGTGATT--------ATCTTTCC-TTAGCAAATGCCTCCC-TCCAGTAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCGTTTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACGTGAAGT-----------TGAGAGATGAAAGAGAGCAAACGAGTCTTTT---ATTACAGAAAAA---CTTACCTATGGTGGAAAATGTAGGTGAATGGCTAATATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----GGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCCTCTT---GCACCTCATATTTCTGCTCTTTATCTTCTAAGA--TTCTCTTTTTATTTCGGAGTGCCTAATTTTGTCTTT-GTTTTGTTGCCTCTGAAATCACAAGAACATTCC-------ATAG-GGCTATTCATTATAGCTGTCCCTAAC????????????????????????????????????????????????????? Silene_marizii_M4_1_g2963 ?????AACCTTG--GTG------TTTTTTTTT--------------TTTGGTCAGTGATT--------ATCTTTCC-TTAGCAAATGCCTCCC-TCCAGTAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCGTTTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACGTGGAGT-----------TGAGAGATGAAAGAGAGCAAACGAGTCTTTT---ATTACAGAAAAA---CTTACCTATGGTGGAAAATGTAGGTGAATGGCTAATATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----GGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCCTCTT---GCACCTCATATTTCTGCTCTTTATCTTCTAAGA--TTCTCTTTTTATTTCGGAGTGCCTAATTTTGTCTTT-GTTTTGTTGCCTCTGAAATCACAAGAACATTCC-------ATAG-GGCTATTCATTATAGCTGTCCCTAAC????????????????????????????????????????????????????? Silene_multinervia_P_01450 ???????CCTTATTGTG---------TTTTCTCTCTGTAGTTTATGCTTTCTCAGTGATT--------ATCTTACC-TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAAAACATAGATGTGTTCATGATC----TATTGCTCCACT-AAAACTATT------ATT---GATTT-GATTCATCTATAATGCTTAAACAGCAGACTTCTTTG-CTCTGACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACGTGGGGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTCT---ATTACAGAAAAA---CTTACCTATGGTGGAAA-TGTTGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TTTTTGGCACGTTCTGAAGCAAATTTGA----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACTTCGTATTTCTGCTCTT-TTCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCAACTTTTGTCTTT-GTGTTGTTACATCCGAAATCACAATAACATTCC-------ATAT-GGCTATTCATTATAGCTATCCCCAACTATT-------CTTGGGACTAATGC???????????????????????????? Silene_multinervia_R_04371 ??????????????????????????????CTCTCTGTTGTTTATGCTTTCTCAGTGATT--------ATCTTACC-TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAAAACATAGATGTGTTCATGATC----TATTGCTCCACT-AAAACTATT------ATT---GATTT-GATTCATCTATAATGCTTAAACAGCAGACTTCTTTG-CTCTGACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACGTGGGGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTCT---ATTACAGAAAAA---CTTACCTATGGTGGAAA-TGTTGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TTTTTGGCACGTTCTGAAGCAAATTTGA----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACTTCGTATTTCTGCTCTT-TTCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCAACTTTTGTCTTT-GTGTTGTTACATCCGAAATCACAATAACATTCC-------ATAT-GGCTATTCATTATAGCTATCCCCAACTATT-------CTTGGGACTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG Silene_multinervia_S_02970 ???????????????????????????TTTCTCTCTGTTGTTTATGCTTTCTCAGTGATT--------ATCTTACC-TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAAAACATAGATGTGTTCATGATC----TATTGCTCCACT-AAAACTATT------ATT---GATTT-GATTCATCTATAATGCTTAAACAGCAGACTTCTTTG-CTCTGACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACGTGGGGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTCT---ATTACAGAAAAA---CTTACCTATGGTGGAAA-TGTTGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TTTTTGGCACGTTCTGAAGCAAATTTGA----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACTTCGTATTTCTGCTCTT-TTCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCAACTTTTGTCTTT-GTGTTGTTACATCCGAAATCACAATAACATTCC-------ATAT-GGCTATTCATTATAGCTATCCCCAACTATT-------CTTGGGACTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG Silene_nigrescens_KGB217_00543 AGGAAAACCTTATTGTG---------TTTTGTCTCTGTTGTTTATGCTTTCTCAGGGATT--------ATCTTACC-TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAAAACATAGATGTGTTCATGATC----TATTGCTCCACT-AAAACTATT------ATT---GATTT-GATTCATCTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTGACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCTGTTTCTTTTAAAGCACGTGGGGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTCT---ATTACAGAAAAA---CTTACCTATGGTGGAAA-TGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTACCTT----TGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTTGA----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACCTCGTATTTCTGCTCTT-TTCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCTTT-GTGTTGTTACATCTGAAATCAGAATAACATTCC-------ATATGGGCTATTCATTATAGCTAGCCCCAACTACT-------ATTGGGACTAATGCGGTCAGTCGCTTGACTGTTGATTGCAGG Silene_nigrescens_KGB217_01304 AGGAAAACCTTATTGTG---------TTTTGTCTCTGTTGTTTATGCTTTCTCAGGGATT--------ATCTTACC-TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAAAACATAGATGTGTTCATGATC----TATTGCTCCACT-AAAACTATT------ATT---GATTT-GATTCATCTATAGTGCTTAAACAGCAGACTTCCTTG-CTCTGACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CGTTCACTTTTGGTTCTGTTTCTTTTAAAGCACGTGGGGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTCT---ATTACAGAAAAA---CTTACCTATGGTGGAAA-TGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTACCTT----TGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTTGA----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACCTCGTATTTCTGCTCTT-TTCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCTTT-GTGTTGTTACATCTGAAATCAGAATAACATTCC-------ATATGGGCTATTCATTATAGCTAGCCCCAACTACT-------ATTGGGACTAATGCGGTCAGTCGCTTGACTGTTGATTGCAGG Silene_noctiflora_O_541 AGC-AAACCTTATTGTT-------TTTTTTGTCTCTGTTGTTTATGTTTTCTCAGTGATT--------ATCTTACC-TTAGCAAATGCCTCCCTTCCAGGAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCATCTATAGT------ACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACGCATTT-GCAT----------------CTTCACTTT-GGTTCGGTTTCTTTTAAAGCACATGGAGG-----------TGAGAGATGAAAGAGGGCAAAAGAGT--TTT---ATTGCAGAAAAC---CTTACCTATGGTGGAAA-TGTAGGTGAATGGCTAAGATGGAT-----AAATTAAAGAAGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TCTTTGGCATTTTCTGAAGCAAATTCCA----ATTTTCA----------TTTTTGTTTTTCCTCTT---GCACCTCGTATTTCTGCTCT--ATCTTCTGAGATTTTCTCCTTTTATTT-GGTGCCCCTACTTTTGTCTTT-GTGTTGCTGCATTCGAAATCACAATTACATTCC-------ATAT-GGCTGTTCATTATAGCTGGCCCCAACTATT-------ATTGGGACTAATGCGGTCAGTCACT-AACTGTTGATTGCAGG Silene_noctiflora_P_04116 ???????????????????????????????????????????ATGTTTTCACAGTGATT--------ATCTTACC-TTAGCAAATGCCTCCCTTCCAGGAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTCATCTATAGT------ACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACGCATTT-GCAT----------------CTTCACTTT-GGTTCGGTTTCTTTTAAAGCACATGGAGG-----------TGAGAGATGAAAGAGGGCAAAAGAGT--TTT---ATTGCAGAAAAC---CTTACCTATGGTGGAAA-TGTAGGTGAATGGCTAAGATGGAT-----AAATTAAAGAAGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TCTTTGGCATTTTCTGAAGCAAATTCCA----ATTTTCA----------TTTTTGTTTTTCCTCTT---GCACCTCGTATTTCTGCTCT--ATCTTCTGAGATTTTCTCCTTTTATTT-GGTGCCCCTACTTTTGTCTTT-GTGTTGCTGCATTCGAAATCACAATTACATTCC-------ATAT-GGCTGTTCATTATAGCTGGCCCCAACTATT-------ATTGGGACTAATGCGGTCAGTCACT-AACTGTTGATTGCAG? Silene_pendula_12654_02966 ?????????????????????????????????????????????????????????????????????????ACC?TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAAAACATAAATGTGTTCATGATC----TATTGCGCCACT-AAAACTATT------ATT---GATTTTGATTAATCTGCAGTGCTTGAACAGCAGACTTTTTTGGCTCTCGTAAAAGTAAGAAATTGTACACACCCATTT-GTACA--------------CGTTCACTTTTTGTTCAGTTTCTTTTAAAGCACATGGAGG-----------TGAGA--TGAAAGAGGGCAAAAGAGTCTTTTATTATTGCAGAAAAA---CTTGCCTATGGTGGAAA-TGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAACGTG---------------------TTATCTT----TGTATTTCCA-------------TCTTTGGCACGTTCTGAAGCAAATTCAA-----TTTTCA----------TATTTGTTTTCCCTCTT---GCACCTCTTATATCTGCTCTT-ATCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTC-TG-CTGTTGTTGCATCCGAAATCAC--TAACATTTC-------ATAC-CGCTATTCATTATAGCTGACCC-AACTATT-------ATTGGGACTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG Silene_quadriloba_12438_03585 ????????????????????????????TTGTCTCTGTTGTTTATGCTTTCTCAGGGATT--------ATCTTACC-T??GCAAATGCCTCCC-TCCAGGAAGGTACAAAACATAGATGTGTTCATGATC----TATTGCTCCACT-AAAACTATT------ATT---GATTT-GATTCATCTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTGACAAGAGTAAAAAACTGTACTC--CCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACGTGGGGGG----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTCT---ATTACAGAAAAA---CTTACCTATGGTGGAAA-TGTAGGTGAAT----AAGATGGAT-----ATATAAACGATGACAAACAAATGAG---------------------TTACCTT----CGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTTGA----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACCTCGTATTTCTGCTCTT-TTCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCTTT-GTGTTGTTACATCCGA--TCACAATAACATTCC-------ATAT-GGCTATTCATTTTAGCTAGCCCCAACTATT-------AT???????????????????????????????????????? Silene_subconica_1033_03497 ???????????????????????????????????????????????????????????????????????????????????????????????????????????AAAACGTAAATGTGTTCATGATC----TATGGCGCCACT-AAGACTGCT------ATT---GGTTTTGATTCATCTATAG------------------------------------TTAAAAACTGTACTCGCGCATTT-GTATA--------------CGTTCACTTT-GGTGCAGTTTCTTTTAAAGCGTATGGAGG-----------TGAGAGATGAAAGAGGGCAAAAGAGT--TTT---ATTGCAGAAAAA---CTT--------------------------------------------AAATAAAAGATGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TCTTTGGCACTTTCTGAAGCAAATTCAA----ATTTTCA----------TTTTTGTTTTCCTTCTT---GCACCTCGTATTTCTGCTCTT-ATCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCAACTTTTTTCTTT-GTGTTGCCCCAA-----------------------------------CTGTTCATTCTAGGTGGCCCCAACTATT-------ATTGAGACTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG Silene_turkestanica_2369_04 ????????????????????????????????????????????????????????GATT--------ATCTTACC-TTAGCAAATGCCTCCCTTCCAGGAAGGTAGAAAACATAAGTGTGTTCATGATC----TATTGTGCCACT-AAAACTATT------ATT---GATTTTGATTCATCTATAGT------ACAGCAGACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCACGCATTT-GCAT----------------CTTCACTTT-GGTTCGGTTTCTTTTAAAGCACATGGAGG-----------TGAGAGATGAAAGAGGGCAAAAGAGT--TTT---ATTGCAGAAAAC---CTTGCTTTTGGTGGAAA-TGTAGGTGAATGGCTAAGATGGAT-----AAATAAAAGAAGACAAACAAATGAG---------------------TTGTCTT----TGTATTTTCA-------------TCTTTGGCATTTTCTGAAGCAAATTCCA----ATTTTCA----------TTTTTGTTTTTCCTCTT---GCACCTCGTATTTCTGCTCTC-ATCTTCTGAGATTTTCTCCTTTTATTT-GGTGCCCCTACTTTTGTCTTT-GTGTTGCTGCATTCGAA-TCACAATAACATTCC-------ATAT-GGCTGTTCATTATAGCTGACCCCAACTATT-------ATTGGGACTAATGCGGTCAGTCACT-AACTGTTGATTGCAGG Silene_uniflora_2403_00646 ???????CCTTATTGTT--TATTTTTGTTTGTCTCTGTTGTTTATGTTTTCTCAGTGATT--------ATCTTACC-TTGGCAAATGCCGCCC-TCCAGA---GTAGAAAACATAAATGTGTTCATGATC----TATTGCGCAACT-AAAACTATT------ATT---GATTTTGATTCGTCTATAGTGTTTAAACAGCAAACTTCTTTG-CTCTCACAAGAGTCAAAAACTGTACTCATCCATTTTGTATA--------------CGTTCACTTTTGGTTTGGTTTCTTTTCAAGCCCATGGTGG-----------TGAGA--TGAAAGAGGGCAAAAGAGTCTTTT---ATCACGGAAAAA---CTTACTTGCAATGGAAA-TGTAGATGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTATCTTGGTTGGTATTTTCA-------------TCTTTGGTGCGTTCTGAAGCGAATTTTC----ATTTTCA----------TTTTTGTTTTCCTTCTT---GCACCTCGTATTTCAGCTCTG-ATCTTCTAATATTTCCTCTCTTTATTTTCGACCGCCTACTTTTGTCTTT-GTACTGTTGCATCTGAAATAACAATAACATTCCATAGGCCATAG-GGCTATTCATTATAGCTGTCCCTAACTATT-------ATTGGGACTAATGCGGCCAGTCACTTATTTATCGATTGCAGG Silene_viscosa_7705_02969 ?????????????????????????????????????????????GCTTTCTCAGGGATT--------ATTTTACC-TTAGCAAATGCCTCCC-TCCAGGAAAGTACAAAACATAGATGTGTTCATGATC----TATTGCTCCACT-AAAACTATT------ATT---GATTT-GATTCATCTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTGACAAGAGTAAAAAACTGTACTC--CCATTT-GTATA--------------CGTTCACTTTTGGTTCGGTTTCTTTTAAAGCACGTGGGGGG----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTCT---ATTACAGAAAAA---CTTACCTATGGTGGAAA-TGTAGGTGAAT----AAGATGGAT-----ATATAAACGATGACAAACAAATGAG---------------------TTACCTT----CGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTTGA----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACCTCGTATTTCTGCTCTT-TTCTTCTAAGATTTTCTCCTTTTATTTTTGTGCCCCTACTTTTGTCT??????????????????????????????CATTCC-------ATAT-GGCTATTCATTTTAGCTAGCCCCAACTATT----------------------------CACTTAACTGTTGATTGCAGG Silene_zawadzkii_2447_556 AGG-AAACCTTATTGTG---------TTTTGTCTCTGTTGTTTATGCTTTCTCAGGGATT--------ATCTTACC-TTAGCAAATGCCTCCC-TCCAGGAAGGTAGAAAACATAGATGTGTTCATGATC----TATTGCTCCACT-AAAACTATT------ATT---GATTT-GATTCATCTATAGTGCTTAAACAGCAGACTTCTTTG-CTCTGACAAGAGTCAAAAACTGTACTCACCCATTT-GTATA--------------CRTTCACTTTTGGTTCGGTYTCTTTTAAAGCACGTGGGGG-----------TGAGAGATGAAAGAGGGCAAAAGAGTCTTCT---ATTACAGAAAAA---CTTACCTATGGTGGAAA-TGTAGGTGAATGGCTAAGATGGAT-----AAATAAACGATGACAAACAAATGAG---------------------TTATCTT----TGTATTTTCA-------------TCTTTGGCACGTTCTGAAGCAAATTTGA----ATTTTCA----------TTTTTGTTTTCCCTTTT---ACACCTCGTATTTCTGCTCTT-TTCTTCTAAGATTTTCTCCYTTTATTTTTGTGCCCCTACTTTTGTCT---GTGTTGTYACATCCGAAATCACAATAACATTCC-------ATAT-GGCTATTCATTATAGCTAGCCCCAACTATT-------ATTGGGACTAATGCGGTCAGTCACTTAACTGTTGATTGCAGG ; END; BEGIN CHARACTERS; TITLE RPD2b_indels; DIMENSIONS NCHAR=103; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1"; MATRIX Atocion_rupestre_13547_FJ383961 0000???10000001??101001?110?0010000000010010001?100001101010101?1100100?1010010000000000100000011001000 Eudianthe_laeta_1341_581 101??????????????????0?1010?1000100110010010011?10000110100010011100101?1001010000?1?????000001??001010 Lychnis_chalcedonica_2487_00618 1000?????100001??1010011010?1000000100010010001?100001101001001?1?10100?11?001000010?000000000001001000 Lychnis_coronaria_7494_AJ634144 1000?????100001??101001100011000000100010010001?010001101001101?1?10100?11?0010000000000100000001001000 Lychnis_floscuculi_2406_AJ634113 1000???????1001??1010011010?1000000100010010001?100001101001101?1?10100101?0010000000000100000001001000 Lychnis_flosjovis_2506_00596 1000?????100001??101001100011000000100010010001?10000110100111??1?10100?11?0010000000000100000001001000 Lychnis_flosjovis_2506_00597 1000?????100001??101001100011000000100010010001?100001101001101?1?10100?11?0010000000000100000001001000 Petrocoptis_pyrenaica_12875_FJ376961 1000????1000011??101001100001000000100010000011?100001101010101?1??1100?10100111?0001000100010011101000 Silene_ammophila_12639_03488 ??????????????00011?00110?1??000?10100010010101?00000101?????01?1??1100?1010010000000001?10???0??001000 Silene_aprica_7570_00550 1000??????10001??1010011010?1100000100010011001?000001101000101?1??1100?1010010000000000100000011001000 Silene_aprica_7570_00551 1000??????10001??1010011010?11000011000110?0001?000001101000101?1??1100?1010010000000000100000011001000 Silene_aprica_7570_00552 1000??????10001??10101??010?11000001000100100001000001101000101?1??1100?1010010000000000100000011001000 Silene_conica_O_AJ634146 ??00?????1000001?11?0011010?1000?10100010010101?00000111?????01?1??1100?10100100000000001?1????????1000 Silene_coniflora_D_04320 ????????????001??1010010010?1000?10100010010101?00000111?????01?1??1100?1010010000000000100000011000000 Silene_coniflora_S_04322 ????????????001??1010010010?1000?10100010010101?00000111?????01?1??1100?1010010000000000100000011000000 Silene_coniflora_Z_04324 ????????????001??1010010010?1000?10100010010101?00000111?????01?1??1100?1010010000000000100000011000000 Silene_conoidea_12655_2967 ??????????????1??1010010010?1000?10100010010101?00000111?????01?1??1100?1010010000000000100000010000000 Silene_diclinis_DIC_7_a2952 ?101??1000001?1??1010011010?1000000100010010001?000001100000101?1??1100?101000001000000010000001100???? Silene_diclinis_DIC_7_c4593 ?101??1000001?1??1010011010?1000000100010010001?000001100000101?1??1100?101000001000000010000001100???? Silene_dioica_D184_24_2950 ?101100000001?1??1010011010?1000000100010010001?000001100000101?1??1100?101000001000000010000001100???? Silene_elisabethae_2470_02981 ??????????????1??1010011010?100000010?1100100000100001101000101?1000100?1010010000000000100000011001000 Silene_fedtschenkoana_12132_04317 ????????????001??1010011010?0100000100010010001?000001101000101?1??1100?1010010000000100100000011001000 Silene_heuffelii_H4_6_2960 ??0100000000001??1010011010?1000000100010010001?000001100000101?1??1100?101000000000000010000001100???? Silene_latifolia_L121_9_03149 ????????????1?1??1010011010?1000000100010010001?00101?100000101?1??1100?101000001000000010000001100???? Silene_latifolia_L170_10_g2958 ?101?10000001?1??1010011010?1000000100010010001?000001100000101?1??1100?101000001000000010000001100???? Silene_latifolia_L170_10_t4598 ?101?10000001?1??1010011010?1000000100010010001?000001100000101?1??1100?101000001000000010000001100???? Silene_latifolia_L200_2_03154 ????????????1?1??1010011010?1000000100010010001?000001100000101?1??1100?101000001000000010000001100???? Silene_latifolia_L81_9_04115 1001100000001?1??1010011010?1000000100010010001?000001100000101?1??1100?1010000010000000100000011001000 Silene_macrodonta_13984_03160 ??????????????00111?0001010?1000?10100010010101?00000111?????01?1??1100?1010010000000000110???0??001000 Silene_marizii_M4_1_a2963 ??01????10001?1??1010011010?1000000100010010001?000001100000101?1??1100?101000001000000010000001100???? Silene_marizii_M4_1_g2963 ??01????10001?1??1010011010?1000000100010010001?000001100000101?1??1100?101000001000000010000001100???? Silene_multinervia_P_01450 ??00??????10001??1010011010?1100000100010010001?000001101000101?1??1100?1010010000000000100000011001??? Silene_multinervia_R_04371 ????????????001??1010011010?1100000100010010001?000001101000101?1??1100?1010010000000000100000011001000 Silene_multinervia_S_02970 ????????????001??1010011010?1100000100010010001?000001101000101?1??1100?1010010000000000100000011001000 Silene_nigrescens_KGB217_00543 0000??????10001??1010011010?1100000100010010001?000001101000101?1??1100?1010010000000000100000010001000 Silene_nigrescens_KGB217_01304 0000??????10001??1010011010?1100000100010010001?000001101000101?1??1100?1010010000000000100000010001000 Silene_noctiflora_O_541 1000?????100001??1000011010?1000?101000101?0101?000101101000101?1??1100?10101?0001000000100000011001001 Silene_noctiflora_P_04116 ??????????????1??1000011010?1000?101000101?0101?000101101000101?1??1100?10101?0001000000100000011001001 Silene_pendula_12654_02966 ??????????????????010011010?1000000000010010001?100000101000101?1??1?10?1010010000000010100001011011000 Silene_quadriloba_12438_03585 ????????????001??1010011010?11000001010100100001000001101100101?1??1100?10100100000000001001?0011001??? Silene_subconica_1033_03497 ?????????????????????011010?1001????00010010101?00010111?????01?1??1100?1010010000000000110???0??001000 Silene_turkestanica_2369_04 ??????????????1??1000011010?1000?101000101?0101?000101101000101?1??1100?1010010001000000100010011001001 Silene_uniflora_2403_00646 ??0010000000001??1011011010?1000000100000010001?100001101000101?0??1100?1010010000000000100000001001000 Silene_viscosa_7705_02969 ??????????????1??1010011010?11000001010100100001000001101100101?1??1100?10100100000?000???????01100?1?0 Silene_zawadzkii_2447_556 1000??????10001??1010011010?1100000100010010001?000001101000101?1??1100?1010010000000001?00000011001000 ; END; BEGIN TREES; Title RPD2b_TB; LINK Taxa = taxa; TRANSLATE 1 Atocion_rupestre_13547_FJ383961, 2 Eudianthe_laeta_1341_581, 3 Lychnis_chalcedonica_2487_00618, 4 Lychnis_coronaria_7494_AJ634144, 5 Lychnis_floscuculi_2406_AJ634113, 6 Lychnis_flosjovis_2506_00596, 7 Lychnis_flosjovis_2506_00597, 8 Petrocoptis_pyrenaica_12875_FJ376961, 9 Silene_ammophila_12639_03488, 10 Silene_aprica_7570_00550, 11 Silene_aprica_7570_00551, 12 Silene_aprica_7570_00552, 13 Silene_conica_O_AJ634146, 14 Silene_coniflora_D_04320, 15 Silene_coniflora_S_04322, 16 Silene_coniflora_Z_04324, 17 Silene_conoidea_12655_2967, 18 Silene_diclinis_DIC_7_a2952, 19 Silene_diclinis_DIC_7_c4593, 20 Silene_dioica_D184_24_2950, 21 Silene_elisabethae_2470_02981, 22 Silene_fedtschenkoana_12132_04317, 23 Silene_heuffelii_H4_6_2960, 24 Silene_latifolia_L121_9_03149, 25 Silene_latifolia_L170_10_g2958, 26 Silene_latifolia_L170_10_t4598, 27 Silene_latifolia_L200_2_03154, 28 Silene_latifolia_L81_9_04115, 29 Silene_macrodonta_13984_03160, 30 Silene_marizii_M4_1_a2963, 31 Silene_marizii_M4_1_g2963, 32 Silene_multinervia_P_01450, 33 Silene_multinervia_R_04371, 34 Silene_multinervia_S_02970, 35 Silene_nigrescens_KGB217_00543, 36 Silene_nigrescens_KGB217_01304, 37 Silene_noctiflora_O_541, 38 Silene_noctiflora_P_04116, 39 Silene_pendula_12654_02966, 40 Silene_quadriloba_12438_03585, 41 Silene_subconica_1033_03497, 42 Silene_turkestanica_2369_04, 43 Silene_uniflora_2403_00646, 44 Silene_viscosa_7705_02969, 45 Silene_zawadzkii_2447_556; TREE RPD2b_MB_con_50_majrule = (1:0.065598,(((3:0.017153,5:0.024783)0.85:0.003914,(4:0.01255,(6:0.004104,7:0.00137)1.00:0.008212)1.00:0.013642)1.00:0.048737,((((((((10:0.011432,11:0.008851)0.78:0.002762,22:0.018274,(40:0.001726,44:0.005223)1.00:0.014611)0.89:0.002724,(12:0.014513,(35:0.001343,36:0.002772)1.00:0.005578)1.00:0.008398)0.98:0.003011,45:0.002823)0.94:0.003815,(32:0.002953,34:0.001406,33:0.00142)1.00:0.012167)1.00:0.023869,(((18:0.001514,19:0.003025)1.00:0.008998,20:0.003083,28:0.002193,(24:0.004732,27:0.001568)0.98:0.003114,25:0.003088,26:0.001555,(30:0.003003,31:0.001547)1.00:0.00617)1.00:0.047399,23:0.010752)0.99:0.010261,(((37:0.00156,38:0.002909)1.00:0.006032,42:0.012648)1.00:0.029239,((9:0.046228,(13:0.013723,29:0.015188,41:0.013525)0.68:0.005318)1.00:0.023392,(17:0.014955,(16:0.002574,(14:0.00455,15:0.001528)0.99:0.005161)1.00:0.020876)1.00:0.009634)1.00:0.029239)1.00:0.010874)0.71:0.003784,39:0.058389)0.96:0.005874,21:0.036898)0.99:0.008268,43:0.080311)0.66:0.005068,(2:0.146113,8:0.065506)0.60:0.008138); TREE RPD2b_BS_PAUP_1 = (1,(2,8)54,((3,5)77,(4,(6,7)99)100)100,(((10,11,(12,(35,36)98)94,22,(40,44)100)81,45)80,(32,34,33)100)100,(((18,19)99,20,28,(24,27)64,25,26,(30,31)96)100,43)54,21,23,(((37,38)97,42)100,((9,(13,29,41)68)100,(17,(16,(14,15)83)100)94)100)93,39)0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = RPD2b_dna) = unord: 1 - 758; TYPESET * UNTITLED (CHARACTERS = RPD2b_indels) = unord: 1 - 103; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = RPD2b_dna) = universal: 1 - 758; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = RPD2b_dna) = 'Jukes-Cantor': 1 - 758; ProbModelSet * UNTITLED (CHARACTERS = RPD2b_indels) = 'Mk1 (est.)': 1 - 103; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1295559958635; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1590683761813814104; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7947971573963627380; mqVersion 273; checksumv 0 2 2916868278 null getNumChars 758 numChars 758 getNumTaxa 45 numTaxa 45 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 712467.0 sumSquares -3.2281802128991646E19 NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; setID 1 6880472359245716195; mqVersion 273; checksumv 1 2 2187734273 null getNumChars 103 numChars 103 getNumTaxa 45 numTaxa 45 short true bits 3 states 3 sumSquaresStatesOnly 7466.0 sumSquares 7466.0 NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 329; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 801 624; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;