#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Downloaded on January 20, 2011; 19:06 GMT TreeBASE (cc) 1994-2008 Study reference: Rautenberg A., Sloan D.B., Ald?n V., & Oxelman B. 2010. Phylogenetic relationships of Silene multinervia and Silene section Conoimorpha (Caryophyllaceae). Systematic Botany, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11085] [ The following blocks are input data for analysis step 6752 ] BEGIN TAXA; TITLE TaxaForAnalysisStep6752; DIMENSIONS NTAX=43; TAXLABELS Agrostemma_githago Atocion_lerchenfeldianum Beta_vulgaris Eudianthe_laeta Heliosperma_pusillum Lychnis_coronaria Petrocoptis_pyrenaica Silene_acaulis Silene_akinfievii Silene_ammophila Silene_conica Silene_coniflora_D Silene_coniflora_S Silene_conoidea Silene_davidii Silene_fruticosa Silene_integripetala Silene_latifolia_ASCH Silene_latifolia_PRT Silene_latifolia_SDG Silene_littorea Silene_lydia Silene_macrodonta Silene_multinervia_P Silene_multinervia_S Silene_noctiflora Silene_pendula Silene_pygmaea Silene_samia Silene_schafta Silene_schwarzenbergeri Silene_sorensenis Silene_subconica Silene_turkestanica Silene_uniflora Silene_vulgaris_1v Silene_vulgaris_30v Silene_vulgaris_37v Silene_vulgaris_sv03 Silene_vulgaris_sv06 Silene_zawadzkii Viscaria_alpina Viscaria_vulgaris ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M7331] TITLE nad9; LINK TAXA = TaxaForAnalysisStep6752; DIMENSIONS NCHAR=464; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Agrostemma_githago TTTACCCAAGAAATGGGTCCAAAAAATGGAAAGATCGGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTGTTGTGCTTTCTTAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCTGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Atocion_lerchenfeldianum TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Beta_vulgaris ?????????????????????????????????????GAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTGTTGTGCTTTCTTAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACGAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGGCTACAAACCTGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCTGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGC?????????????????????????????????? Eudianthe_laeta TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Heliosperma_pusillum TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATTTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTTCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Lychnis_coronaria ?????????????????????????????????????GAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACAAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGC?????????????????????????????????? Petrocoptis_pyrenaica TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATTTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_acaulis TTTACCCAAGAAATGGCTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTCTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAG? Silene_akinfievii TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTCAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTAAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_ammophila TTTACCCAAGAAGTGGGTCAAAAGAATGGAAAAAGAAAAAGATGGGAATAGATTTGATACCAATACGGACTTCACCTTTCAATTATTGTGTTTTCTTAAATTGCATAGCTATACAAGGTATGAGGTTTTGGTCGATATATGTGGAGTGGATTATCCTTCTAGAAGTCTACGCTTTGAAGTTGTATATAATTTACTGAGTACTCGTTTTAATTCTCGTCTTCGCGTCCAAAGCAGTGCAGACGAAGTCAGACGAATCCCGTCCGTAGTCAGTCTCTTTCCATCAGCAAACTGGTGTGAACGAGAAGTTTGGGATATGTTTGGCATTTCTTTCATCAACCATCCTGATTTACGCCGTATATTAACAGATTATGGTTTCGAGGGACATCCATTACGAAAGGACTTTCCTCTGAGTGGCTATGTCGAAGTCCGCTATGATGATCCAGAAAAACGGGTGGTTTCTGAGC Silene_conica TTTACCCAAGAAGTGGGTCAAAAGAATGGAAAAAGAAAAAGATGGGAATAGATTTGATACCAATACGGACTTCACCTTTCAATTATTGTGCTTTCTTAAATTGCATAGCTATACAAGGTATGAAGTTTTGGTTGATATATGTGGAGTGGATTATCCTTCTAGAAAACTACGTTTTGAAGTTGTATATAATTTACTGAGTACTCGTTTTAATTCTCGTATTCGCATCCAAAGCAGTGCAGACGAAGTCAGCCGAATCCCATCCGTAGTCAGCCTCTTTCCATCAGCAAACTGGTGTGAACGAGAAGTTTGGGATATGTTTGGCATTTCTTTCATCAACCATCCTGATTTACGCCGGATATTAACAGATTATGGCTTCGAGGGACATCCATTACGAAAGGACTTTCCTCTGAGTGGCTATGTCGAAGTCCGCTATGATGATCCAGAAAAACGTGTGGTTTCTGAGC Silene_coniflora_D ????????????????????????????GAAAAAGAGGAAGCTGGGAATAGATTTGATACCACTACGGACTTCGTCTTTCAATTATTGTCCTTTCTCAAATTGCATAGCTATACGAGGTATGAAGTTTTGGTCGATATATGTGGAGTGGATTATCCTTCTAGAAGTCTACGATTTGAAGTTGTATATAATTTACTCAGTACTCGTTTTAATTCTCGTATTAGCGTTCAAACGAGTGCAGACGAAGTCAGAAGAATCCCGTCCGCAGTCAGTCTCTTTCCATCAGCAAACTGGTGTGAGCGAGAAATTTGGGATATGTTTGGGATTTCTTTCATCAATCATCCTGATTTACGCCGTATATTAACAGATTATGGCTTTGAGGGACATCCATTAAGAAAAGACTTTCCTCTGAGTGGATATATAGAAGTACGCTATGAT???????????????????????????? Silene_coniflora_S ????????????????????????????GAAAAAGAGGAAGCTGCGAATAGATTTGATACCACTACGGACTTCGTCTTTCAATTATTGTCCTTTCTCAAATTGCATAGCTATACGAGGTATGAAGTTTTGGTCGATATATGTGGAGTGGATTATCCTTCTAGAAGTTTACGATTTGAAGTTGTATATAATTTACTCAGTACTCGTTTTAATTCTCGTATTAGCGTTCAAACGAGTGCAGACGAAGTCAGAAGAATCCCGTCCGCAGTCAGTCTCTTTCCATCAGCAAACTGGTGTGAGCGAGAAATTTGGGATATGTTTGGGATTTCTTTCATCAATCATCCTGATTTACGCCGTATATTAACAGATTATGGCTTTGAGGGACATCCATTAAGAAAAGACTTTCCTCTGAGTGGATATATAGAAGTACGCTATGAT???????????????????????????? Silene_conoidea ??????CAAGAAATGGGTCAAAAGAATGGAAAAAGAAGAAGCTGGGAATAGATTTGATACCACTAAGGACTTCGTCTTTCAATTATTGTGCTTTCTTAAATTGCATAGCTATACAAGGTATGAAGTTTTGGTTGATATATGTGGAGTGGATTATCCTTCTCGAAATCTACGCTTTGAAGTTGTCTATAATTTACTCAGTACTCGTTTTAACTCTCGTATTCGCGTCCAAACGAGTGCAGACGCAGTCAGGCGAATCCCTTCCGTAGTCAGCCTCTTTCCATCAGCAAACTGGTGTGAGCGAGAAGCTTGGGACATGTTTGGTATTTCTTTCATCAATCATCCTGATTTACGCCGTATATTAACAGATTACGGTTTCGAAGGGCATCCATTAAGAAAAGACTTTCCTCTGAGTGGGTATGTCGAAGTCCGCTATGATGATCCAGAAAAACGCGTGGTTT?????? Silene_davidii TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTCTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_fruticosa TTTACCCAAGAAATGGCTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAACTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTCTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_integripetala ?TTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTAAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_latifolia_ASCH ?????????????????????????????????????GAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACG??????????????????????????????????? Silene_latifolia_PRT ?????????????????????????????????????GAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTTCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGC?????????????????????????????????? Silene_latifolia_SDG ?????????????????????????????????????GAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAAGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTTAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGC?????????????????????????????????? Silene_littorea TTTACCCAAGAAATGGGTAATAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_lydia ????????????????????????????GAAAAAGCAGAACATGGGAATAGAATTGAGACCGATATGGACTTCGTCTTTCAATTATTGTGCTTTCTGAAGTTGCATACCTATACAAGGTATGAAGTTTTGGTCGATATATGTGGAGTGGATTATCCTTCTCGAAGGCTACGCTTTGAAGTTGTCTATAATTTACTCAGTACTCGTTTTAATTCTCGTATTCGCGTCCAAAGCAGTGCAGACGAAGTCAGCCGAGTCCCATCCGTAGTCAGTCTCTTTCCATCAGCAAACTGGTGTGAGCGAGAAGTTTGGGATATGTTTGGTATTTCTTTCATCAATCATCCCGATTTACGCCGGATATTAACAGATTATGGCTTCGAGGGACATCCATTACGAAAGGACTTTCCTCTGAGTGGCTATGTCGAAGTCCGATATGAT???????????????????????????? Silene_macrodonta TTTACCCAAGAAATGGGTCAAAAGAATGGAAAAAGAAAAAGATGGAAATAGATTTGATACCAATACGGACTTCGCCTTTCAATTATTGTGCTTTCTTAAATTGCATAGCTATACAAGGTATGAGGTTTTGGTCGATATATGTGGAGTGGATTATCCTTCTAGAAGGCTACGATTTGAAGTTGTATATAATTTACTCAGTACTCGTTTTAACTCTCGTCTTCGCGTCCAAACCAGTGCAGACGAAGTCAGCCGAATCCCATCCGTAGTCAGTCTCTTTCCATCAGCAAACTGGTGTGAACGAGAAGTTTGGGATATGTTTGGCATTTCTTTCATCAATCATCCTGATTTACGCCGTATATTAACAGATTATGGTTTCGAGGGACACCCATTACGAAAGGACTTTCCTCTCAGTGGATATGTCGAAGTCCGCTATGATGATCCAGAAAAACGCGTGGTTTCTGAGC Silene_multinervia_P ??????CAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTCAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCAGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTCTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGGTTCGAGGGGCATCCATTAAGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTT?????? Silene_multinervia_S ??????CAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTCAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCAGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTCTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGGTTCGAGGGGCATCCATTAAGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTT?????? Silene_noctiflora ?????????????????????????????????????GAACATGGTACTAGATTTGATACGACTCCTGCTTTTTTATTTCAATTATTATGCTTTCTGAGATTGCATACCTATACAAGGTTTGAAGTTTTGATCGATATTTGCGGCGTTGATTATCCTTCTCGACAAGTGCGCTTTGAAGTGGTCTATAATTTACTAAGTACTCGTTATAATTCTCGCATTCGCGTCCAAAGCAGTGCTGACGAAGTCACACGAATATCTCCTGTCGTCAGTCTATTTCCATCAGCCGGCTGGTGGGAGCGTGAAGTCTGGGATATGTTTGGCCTTTCTTTTATCAATCATCCCGATCTACGTCGTATATTAACTGATTATGGCTTCGAGGGTCATCCATTACGCAAGGACTTTCCTCTGAGTGGCTATGTCGAAGTACGG?????????????????????????????????? Silene_pendula TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_pygmaea TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTAAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATACGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_samia TTTACCCAAGAAATGGGTCAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTAAATTTTTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_schafta TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTAAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTATCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTCTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATACGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_schwarzenbergeri TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATTTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTCTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_sorensenis TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTCTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_subconica ??????CAAGAAGTGGGTCAAAAGAATG{AG}AAAAAGAAAAAGATGGGA{AG}TAGATTTGATACCAATACGGACTTCGCCTTTCAATTATTGTGCTTTCT{AT}AAATTGCA{CT}A{CG}CTATACAAGGTATGAAGTTTTGGTTGAT{AG}TATGTGGAGTGGATTATCCTTCTAGAAAACTGCGCTTTGAAGTTGTATATAATTTACTGAGTACTCGTTTTAATTCTCGTATTCGCGTACAAAGCAGTGCAGACGAAGTCAGCCGAATCCCATCCGTAGTCAGTCTCTTTCCATCAGCAAACTGGTGTGAACGAGAAGTTTGGGACATGTTTGGCATCTCTTTCATCAATCATCCTGATTTACGCCG{GT}ATATTAACAGA{CT}TATGGCTTCGAGGGACATCC{AC}TTACGAAAGGACTTTCCTCTGAGTGGCTATGTCGAAGTCCGCTATGATGATCCAGAAAAACGAGTGGTTT?????? Silene_turkestanica TTTACCGAAGAGCTGGGTTAAAAGACTGGAAAAGTCCGAACATGGTACTAGATTTGATACGACTCCTGCTTTTTTATTTCAATTATTATGCTTTCTGAGATTGCATACGTATACAAGGTTTGAAGTTTTGATCGATATTTGCGGCGTTGATTATCCTTCTCGACAAGTGCGCTTTGAAGTGGTCTATAATTTACTAAGTACTCGTTATAATTCTCGCATTCGCGTCCAAAGCAGTGCTGACGAAGTCACACGAATATCTCCTGTCGTCAGTCTATTTCCATCAGCCGGCTGGTGGGAGCGTGAAGTCTGGGATATGTTTGGCCTTTCTTTTATCAATCATCCCGATCTACGTCGTATATTAACTGATTATGGCTTCGAGGGTCATCCATTACGCAAGGACTTTCCTCTGAGTGGCTATGTCGAAGTACGGTATGATGATCCCGAAAAACGGGTTGTTTCTGAGC Silene_uniflora TTTACCCAAGAAATGGGTCAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGGTCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Silene_vulgaris_1v ?????????????????????????????????????GAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGGTCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGC?????????????????????????????????? Silene_vulgaris_30v ?????????????????????????????????????GAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGC?????????????????????????????????? Silene_vulgaris_37v ?????????????????????????????????????GAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGGTCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGC?????????????????????????????????? Silene_vulgaris_sv03 ?????????????????????????????????????GAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGC?????????????????????????????????? Silene_vulgaris_sv06 ?????????????????????????????????????GAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGGTCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGC?????????????????????????????????? Silene_zawadzkii TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAG? Viscaria_alpina TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC Viscaria_vulgaris TTTACCCAAGAAATGGGTAAAAAAAATAGAAAAATCAGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTCAAATTGCATACCTATACAAGGTTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACTAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGGTATAATTCGCGCATTCGCGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATTAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACTTTCCTCTGAGTGGATATGTAGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAGC ; END; [ The following blocks are output data for analysis step 6752 ] BEGIN TREES; TITLE 'nad9 TB'; LINK TAXA = TaxaForAnalysisStep6752; TREE nad9_MB_con_50_majrule = [&R] (Beta_vulgaris:0.021412,Agrostemma_githago:0.00681,(Atocion_lerchenfeldianum:0.003494,Eudianthe_laeta:0.003594,Heliosperma_pusillum:0.006251,Lychnis_coronaria:0.008414,Petrocoptis_pyrenaica:0.005116,Viscaria_alpina:0.003498,Viscaria_vulgaris:0.003484,(Silene_acaulis:0.003458,Silene_fruticosa:0.006831)0.98:0.00713,Silene_akinfievii:0.00975,Silene_davidii:0.003656,(Silene_integripetala:0.003661,(Silene_pygmaea:0.003674,Silene_schafta:0.010636)0.94:0.007172,Silene_samia:0.01076)0.76:0.007002,Silene_latifolia_ASCH:0.004072,Silene_latifolia_PRT:0.006607,Silene_latifolia_SDG:0.012441,Silene_littorea:0.006374,((Silene_noctiflora:0.004119,Silene_turkestanica:0.008202)1.00:0.214971,((((Silene_ammophila:0.029278,Silene_macrodonta:0.03732)0.76:0.016073,(Silene_conica:0.026308,Silene_subconica:0.022219)0.96:0.019051)1.00:0.027377,((Silene_coniflora_D:0.004206,Silene_coniflora_S:0.011922)1.00:0.096637,Silene_conoidea:0.066509)0.99:0.036947)0.98:0.027318,Silene_lydia:0.051889)1.00:0.168312)1.00:0.099884,Silene_pendula:0.003501,Silene_schwarzenbergeri:0.006897,Silene_sorensenis:0.003478,(Silene_uniflora:0.004147,Silene_vulgaris_1v:0.004192,Silene_vulgaris_37v:0.004212,Silene_vulgaris_sv06:0.004149)0.72:0.008033,Silene_vulgaris_30v:0.004038,Silene_vulgaris_sv03:0.004082,Silene_zawadzkii:0.003499,(Silene_multinervia_P:0.003424,Silene_multinervia_S:0.003473)1.00:0.02223)1.00:0.027262); TREE nad9_MB_con_50_majrule = [&R] (Beta_vulgaris:0.021412,Agrostemma_githago:0.00681,(Atocion_lerchenfeldianum:0.003494,Eudianthe_laeta:0.003594,Heliosperma_pusillum:0.006251,Lychnis_coronaria:0.008414,Petrocoptis_pyrenaica:0.005116,Viscaria_alpina:0.003498,Viscaria_vulgaris:0.003484,(Silene_acaulis:0.003458,Silene_fruticosa:0.006831):0.00713,Silene_akinfievii:0.00975,Silene_davidii:0.003656,(Silene_integripetala:0.003661,(Silene_pygmaea:0.003674,Silene_schafta:0.010636):0.007172,Silene_samia:0.01076):0.007002,Silene_latifolia_ASCH:0.004072,Silene_latifolia_PRT:0.006607,Silene_latifolia_SDG:0.012441,Silene_littorea:0.006374,((Silene_noctiflora:0.004119,Silene_turkestanica:0.008202):0.214971,((((Silene_ammophila:0.029278,Silene_macrodonta:0.03732):0.016073,(Silene_conica:0.026308,Silene_subconica:0.022219):0.019051):0.027377,((Silene_coniflora_D:0.004206,Silene_coniflora_S:0.011922):0.096637,Silene_conoidea:0.066509):0.036947):0.027318,Silene_lydia:0.051889):0.168312):0.099884,Silene_pendula:0.003501,Silene_schwarzenbergeri:0.006897,Silene_sorensenis:0.003478,(Silene_uniflora:0.004147,Silene_vulgaris_1v:0.004192,Silene_vulgaris_37v:0.004212,Silene_vulgaris_sv06:0.004149):0.008033,Silene_vulgaris_30v:0.004038,Silene_vulgaris_sv03:0.004082,Silene_zawadzkii:0.003499,(Silene_multinervia_P:0.003424,Silene_multinervia_S:0.003473):0.02223):0.027262); TREE nad9_BS_PAUP_1 = [&R] (Beta_vulgaris,Agrostemma_githago,(Atocion_lerchenfeldianum,Eudianthe_laeta,Heliosperma_pusillum,Lychnis_coronaria,Petrocoptis_pyrenaica,Viscaria_alpina,Viscaria_vulgaris,(Silene_acaulis,Silene_fruticosa),Silene_akinfievii,Silene_davidii,Silene_integripetala,Silene_latifolia_ASCH,Silene_latifolia_PRT,Silene_latifolia_SDG,Silene_littorea,((Silene_noctiflora,Silene_turkestanica),(((Silene_ammophila,(Silene_conica,Silene_subconica),Silene_macrodonta),((Silene_coniflora_D,Silene_coniflora_S),Silene_conoidea)),Silene_lydia)),Silene_pendula,(Silene_pygmaea,Silene_schafta),Silene_samia,Silene_schwarzenbergeri,Silene_sorensenis,(Silene_uniflora,Silene_vulgaris_1v,Silene_vulgaris_37v,Silene_vulgaris_sv06),Silene_vulgaris_30v,Silene_vulgaris_sv03,Silene_zawadzkii,(Silene_multinervia_P,Silene_multinervia_S))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr26249] END;