#NEXUS 

Begin trees;  [Treefile saved Sun Nov 28 14:57:14 2010]
[!
>Data file = /home/anja/cpDNA_con1010_sic.nex
>Bootstrap method with heuristic search:
>  Number of bootstrap replicates = 1000
>  Starting seed = 286490508
>  Optimality criterion = parsimony
>    Character-status summary:
>      202 characters are excluded
>      Of the remaining 4182 included characters:
>        All characters are of type 'unord'
>        All characters have equal weight
>        3107 characters are constant
>        562 variable characters are parsimony-uninformative
>        Number of (included) parsimony-informative characters = 513
>    Gaps are treated as "missing"
>    Multistate taxa interpreted as uncertainty
>  Starting tree(s) obtained via stepwise addition
>  Addition sequence: random
>    Number of replicates = 10
>    Starting seed = 750507879
>  Number of trees held at each step during stepwise addition = 1
>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
>  Steepest descent option not in effect
>  'MaxTrees' setting = 5000 (will not be increased)
>  Branches collapsed (creating polytomies) if maximum branch length is zero
>  'MulTrees' option not in effect; only 1 tree will be saved per replicate
>  Topological constraints not enforced
>  Trees are unrooted
>
>   1000 bootstrap replicates completed
>   Time used = 00:13:42 (CPU time = 00:13:42.0)
]
	Translate
		1 Atocion_rupestre_13547_2,
		2 Eudianthe_laeta_2_3,
		3 Lychnis_chalcedonica_2_2,
		4 Lychnis_coronaria_2488_1,
		5 Lychnis_floscuculi_2406_2,
		6 Lychnis_flosjovis_2506_1,
		7 Petrocoptis_pyrenaica_12875_2,
		8 Petrocoptis_pyrenaica_2486_1,
		9 Silene_akinfievii_6897_3,
		10 Silene_aprica_7570_1,
		11 Silene_davidii_13374_1,
		12 Silene_diclinis_DIC_7_1,
		13 Silene_dioica_D184_24_3,
		14 Silene_elisabethae_2470_1,
		15 Silene_fedtschenkoana_12132_3,
		16 Silene_fruticosa_1064_3,
		17 Silene_heuffelii_H4_6_3,
		18 Silene_integripetala_1920_2,
		19 Silene_latifolia_L81_9_3,
		20 Silene_latifolia_L121_9_3,
		21 Silene_latifolia_L170_10_3,
		22 Silene_latifolia_L200_2_3,
		23 Silene_littorea_13501_3,
		24 Silene_marizii_M4_1_3,
		25 Silene_nigrescens_13357_2,
		26 Silene_nigrescens_KGB217_1,
		27 Silene_noctiflora_O_3,
		28 Silene_noctiflora_P_3,
		29 Silene_pendula_12654_2,
		30 Silene_pseudoatocion_7821_2,
		31 Silene_pygmaea_13772_3,
		32 Silene_quadriloba_12438_3,
		33 Silene_samia_7822_3,
		34 Silene_schafta_7615_2,
		35 Silene_stellata_6374_1,
		36 Silene_turkestanica_12484_3,
		37 Silene_uniflora_7827_3,
		38 Silene_viscosa_7705_3,
		39 Silene_vulgaris_6459_3,
		40 Silene_zawadzkii_2447_3,
		41 Silene_ammophila_12639_3,
		42 Silene_conica_E,
		43 Silene_coniflora_Z_2,
		44 Silene_coniflora_D_2,
		45 Silene_coniflora_S_2,
		46 Silene_coniflora_M_1,
		47 Silene_conoidea_12655_3,
		48 Silene_lydia_Z_1,
		49 Silene_lydia_S_2,
		50 Silene_lydia_L_3,
		51 Silene_macrodonta_13984_3,
		52 Silene_multinervia_P_3,
		53 Silene_multinervia_S_3,
		54 Silene_multinervia_R_3,
		55 Silene_subconica_1033_2
		;
tree PAUP_1 = [&U] (1,2,((3,4,5,6)99,(9,((10,11,15,(25,26)84,(32,38)100,35)98,40)64,(((12,13,20,24)51,21)52,(17,19)86,22)100,14,18,23,((27,28)100,36)100,(29,(37,39)100)99,33,((((41,(42,55)99)99,51)100,((43,44,45,46)90,47)94)93,(48,49,50)100)100,(52,53,54)100)100,((16,30)57,(31,34)100)91)97,(7,8)100)0;
End;