#NEXUS [written Wed Feb 23 18:24:06 CET 2011 by Mesquite version 2.74 (build 550) at pcpats132/130.192.168.132] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=23; TAXLABELS 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 150EA' 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 41SB' Heterobasidion_annosum_sensu_stricto_108OA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 12SA' 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 45EH' Heterobasidion_annosum_sensu_stricto_BM39NA Heterobasidion_annosum_sensu_stricto_BM42SA Heterobasidion_annosum_sensu_stricto_141SA Heterobasidion_annosum_sensu_stricto_BM41NF 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 144OB' 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 81EB' Heterobasidion_irregulare_8OB 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 7NC' Heterobasidion_irregulare_59SA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 51OA' Heterobasidion_irregulare_38NA Heterobasidion_irregulare_29NA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 10SA' Heterobasidion_irregulare_56EC Heterobasidion_irregulare_3OA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 57SA' 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 6EA' H_insulare ; END; BEGIN CHARACTERS; TITLE Heterobasidion_annosum_CAL_Alignment; DIMENSIONS NCHAR=137; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 150EA' GCCTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCGACAAACATTCCGGAATCGGCGAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 41SB' GCCTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCGACAAACATTCCGGAATCGGCGAA Heterobasidion_annosum_sensu_stricto_108OA GCCTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATAATCAGCCATGCCCGACAAACATTCCAGAATCGGCGAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 12SA' GCCTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATAATCAGCCATGCCCGACAAACATTCCAGAATCGGCGAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 45EH' GCCTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATAATCAGCCATGCCCGACAAACATTCCAGAATCGGCGAA Heterobasidion_annosum_sensu_stricto_BM39NA GCCTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATAATCAGCCATGCCCGACAAACATTCCAGAATCGGCGAA Heterobasidion_annosum_sensu_stricto_BM42SA GCCTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATAATCAGCCATGCCCGACAAACATTCCAGAATCGGCGAA Heterobasidion_annosum_sensu_stricto_141SA GCCTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATAATCAGCCATGCCCGACAAACATTCCAGAATCGGCGAA Heterobasidion_annosum_sensu_stricto_BM41NF GCCTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATAATCAGCCATGCCCGACAAACATTCCAGAATCGGCGAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 144OB' GCCTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATAATCAGCCATGCCCGACAAACATTCCGGAATCGGCGAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 81EB' GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCTCCAAACATTTCGGAATCGGCGAA Heterobasidion_irregulare_8OB GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCTCCAAACATTTCGGAATCGGCGAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 7NC' GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCTCCAAACATTTCGGAATCGGCGAA Heterobasidion_irregulare_59SA GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCTCCAAACATTTCGGAATCGGCGAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 51OA' GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCTCCAAACATTTCGGAATCGGCGAA Heterobasidion_irregulare_38NA GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCTCCAAACATTTCGGAATCGGCGAA Heterobasidion_irregulare_29NA GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCTCCAAACATTTCGGAATCGGCGAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 10SA' GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCTCCAAACATTTCGGAATCGGCGAA Heterobasidion_irregulare_56EC GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCGACAAACATTTCGGAATCGGCGAA Heterobasidion_irregulare_3OA GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCGACAAACATTTCGGAATCGGCGAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 57SA' GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCGACAAACATTTCGGAATCGGCGAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 6EA' GCTTCACGGATCATCTCATCGACCTCAGTGTCAGACAATTTCTCACCTGCAAGCAACAGAATGATCAGCCATGCCCGACAAACATTTCGGAATCGGCGAA H_insulare GCCTCGCGTATCATCTCATCGACTTCAGTGTCAGACAGTTTCTCACCTGCAAGCAACATGATAATCAGCCATGCTCGACAGACATTCCGGAATCGGTGGG 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 150EA' AAAAAAAACCCATCGAAAGATCGATGATGGAACACAG 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 41SB' AAAAAAAACCCATCGAAAGATCGATGATGGAACACAG Heterobasidion_annosum_sensu_stricto_108OA AAAAAACCCCCATCGAAAGATCGATGATGGAACACAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 12SA' AAAAAACCCCCATCGAAAGATCGATGATGGAACACAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 45EH' AAAAAACCCCCATCGAAAGATCGATGATGGAACACAA Heterobasidion_annosum_sensu_stricto_BM39NA AAAAAACCCCCATCGAAAGATCGATGATGGAACACAA Heterobasidion_annosum_sensu_stricto_BM42SA AAAAAACCCCCATCGAAAGATCGATGATGGAACACAA Heterobasidion_annosum_sensu_stricto_141SA AAAAAACCCCCATCGAAAGATTGATGATGGAACACAA Heterobasidion_annosum_sensu_stricto_BM41NF AAAAAACCCCCATCGAAAGATTGATGATGGAACACAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 144OB' AAAAAACCCCCATCGAAAGATCGATGATGGAACACAA 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 81EB' AAAAAACCCCCATCGAAGGATCGATAATGGAACACAG Heterobasidion_irregulare_8OB AAAAAACCCCCATCGAAGGATCGATAATGGAACACAG 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 7NC' AAAAAACCCCCATCGAAGGATCGATAATGGAACACAG Heterobasidion_irregulare_59SA AAAAAACCCCCATCGAAGGATCGATAATGGAACACAG 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 51OA' AAAAAACCCCCATCGAAGGATCGATAATGGAACACAG Heterobasidion_irregulare_38NA AAAAAACCCCCATCGAAGGATCGATAATGGAACACAG Heterobasidion_irregulare_29NA AAAAAACCCCCATCGAAGGATCGATAATGGAACACAG 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 10SA' AAAAAACCCCCATCGAAGGATCGATAATGGAACACAG Heterobasidion_irregulare_56EC AAAAAACCCCCATCGAAGGATCGATAATGGAACACAG Heterobasidion_irregulare_3OA AAAAAAACCCCATCGAAGGATCGATAATGGAACACAG 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 57SA' AAAAAAACCCCATCGAAGGATCGATAATGGAACACAG 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 6EA' AAAAAAACCCCATCGAAGGATCGATAATGGAACACAG H_insulare ACAAAAATATCATCGAAAGATCGATGATGAAACACAG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 137; END; BEGIN TREES; Title MP_tree_from_CAL_analysis; LINK Taxa = Taxa; TRANSLATE 1 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 150EA', 2 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 41SB', 3 Heterobasidion_annosum_sensu_stricto_108OA, 4 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 12SA', 5 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 45EH', 6 Heterobasidion_annosum_sensu_stricto_BM39NA, 7 Heterobasidion_annosum_sensu_stricto_BM42SA, 8 Heterobasidion_annosum_sensu_stricto_141SA, 9 Heterobasidion_annosum_sensu_stricto_BM41NF, 10 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 144OB', 11 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 81EB', 12 Heterobasidion_irregulare_8OB, 13 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 7NC', 14 Heterobasidion_irregulare_59SA, 15 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 51OA', 16 Heterobasidion_irregulare_38NA, 17 Heterobasidion_irregulare_29NA, 18 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 10SA', 19 Heterobasidion_irregulare_56EC, 20 Heterobasidion_irregulare_3OA, 21 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 57SA', 22 'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 6EA', 23 H_insulare; TREE PAUP_1 = (23,((1,2),(((11,12,13,14,15,16,17,18),19),20,21,22)),((3,4,5,6,7,(8,9)),10)); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 137; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 137; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1298481846640; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 192093677734243547; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5338525340332880864; mqVersion 274; checksumv 0 2 3968814048 null getNumChars 137 numChars 137 getNumTaxa 23 numTaxa 23 short true bits 15 states 15 sumSquaresStatesOnly 50332.0 sumSquares 50332.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 500; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;