#NEXUS [written Mon Mar 07 08:59:06 CET 2011 by Mesquite version 2.74 (build 550) at C007STAM0004/172.16.10.35] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS Homo_Sapiens Pan_troglodytes Pongo_abelii Macaca_sylvanus Theropithecus_gelada Papio_hamadryas Chlorocebus_aethiops Colobus_guereza Piliocolobus_badius Procolobus_verus Presbytis_melalophos Pygathrix_nemaeus Nasalis_larvatus Simias_concolor Rhinopithecus_avunculus Trachypithecus_obscurus Semnopithecus_entellus ; END; BEGIN CHARACTERS; TITLE DBY5; DIMENSIONS NCHAR=1048; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX Homo_Sapiens GGCAGTAACTGTCCTCCACATATTGAGAATGTAAGTTTTTTGTTTGACTCTTAAAGTTATTAATGCAAACCCATTGGATTATGAAAAAAAAATTAATGTC Pan_troglodytes GGCAGTAACTGTCCTCCACATATTGAGAATGTAAGTTTTTTGTTTGACTCTTAAAGTTATTAATGCAAACCCATTGGATTATGAAAAAAAAATTAATGTC Pongo_abelii GGCAGTAACTGTCCTCCACATATTGAGAATGTAAGTTTTTTGTTTGACTCTTAAAGTTATTAATGCAAACCCATTGGATTATAAAAAAAA--TTAATGTC Macaca_sylvanus GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACTTTTAAAGTTATTAATGCAGACCCATTGGATTATGAAGAAAA--TTAATGTC Theropithecus_gelada GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACTTTTAAAGTTATTAATGCAGACCCATTGGATTATGAAAAAAA--TTAATGTC Papio_hamadryas GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACTTTTAAAGTTATTAATGCAGACCCATTGGATTATGAAAAAAA--TTAGTGTC Chlorocebus_aethiops GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACTTTTAAAGTTATTAATGCAGACCCATTGGATTATGAAAAAA---TTAATGTC Colobus_guereza GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACCTTTAAAGTTATTAATGCAGACCCATTGGATTATAAAAAAAAA-TTAATGTC Piliocolobus_badius GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACCTTTAAAGTTATTAATGCAGACCCATTGGATTATGAAAAAAA--TTAATGTC Procolobus_verus GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACCTTTAAAGTTATTAATGCAGACCCATTGGATTATGAAAAAAA--TTAATGTC Presbytis_melalophos GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACCTTTAAAGTTATTAATGCAGACCCATTGAATTATGAAGAAAA--TTAATGTC Pygathrix_nemaeus GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACCTTTAAAGTTATTAATGCAGACCCATTGGATTATGAAAAAAA--TTAATGTC Nasalis_larvatus GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACCTTTAAAGTTATTAATGCAGACCCATTGGATTATGAAAAAAA--TTAATGTC Simias_concolor GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACCTTTAAAGTTATTAATGCAGACCCATTGGATTATGAAAAAAA--TTAATGTC Rhinopithecus_avunculus GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGTGTTTTGTTTGACCTTTAAAGTTATTAATGCATACCCATTGGATTATGAAAAAAA--TTAATGTC Trachypithecus_obscurus GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGAGTTTTGTTTGACCTTTAAAGTTATTAATGCAGACCCATTGGATTATGAAAAAAA--TTAATGTC Semnopithecus_entellus GGCAGTAACTGTCCTCCACATATTGAAAATGTAAGAGTTTTGTTTGACCTTTAAAGTTACTAATGCAGACCCATTGGATTATGAAAAAAA--TTAATGTC Homo_Sapiens ATTGTTAAGAATAATCCTGGAATTAAAAATTTACCAAACTTATGAAGCATCCATTATTTTTATTTATTTATTTTTTT--------------GAGACAGA- Pan_troglodytes ATTGTTAAGAATAATCCTGGAATTAAAAATTTACCAAACTTATGAAGCATCCATTATTTTTATTTTTTTATTTTTT---------------GAGACAGA- Pongo_abelii ATTATTAAGAATAATTGTGGAATTAAAAATTCATCAAACATTTGAAGCATCCAATTTTTTTTTTTTTTTTTTTTT----------------GAGACAGAG Macaca_sylvanus ATTATTAAGAATAATCCTGGAATTAAAA------------------GCATCCAATTTTTTTTTTTTTTTT---------------------GAGACAG-- Theropithecus_gelada ATTATTAAGAATAATCCTGGAATTAAAA------------------GCATCCAATTTTTTTTTTTTTTTT---------------------GAGACAG-- Papio_hamadryas ATTATTAAGAATAATCCTGGAATTAAAA------------------GCATCCAATTTTTTTTTTTTTT-----------------------GAGACAG-- Chlorocebus_aethiops ATTATTAAGAATAATCCTGGAATTAAAA------------------GCATCCAATTTTTTTTTTTTTTT----------------------GAGAAAG-- Colobus_guereza ATTATTAAGAATAATCCTAGAATTAAAA------------------GCATCCAATTTTTTTTTTTTTTT----------------------GAGACAG-- Piliocolobus_badius ATTATTAAGAATAATC-TAGAATTAAAA------------------GCATCCAATTTTTTTTTTCTTTTTCTTTTTTT-------------GAGACAA-- Procolobus_verus ATTATTAAGAATAATCCTAGAATTAAAA------------------GCATCCAATTTTTTTTTTCTTTTTTTTTT----------------GAGACAA-- Presbytis_melalophos ATTATTAAGAATAATCCTAGAATTAAAA------------------GCATCC--TTTTTTTTTTTTTTTTTTTT-----------------GAGACAG-- Pygathrix_nemaeus ATTATTAAGAATAATCCTAGAATTAAAA------------------GCATACAATTTTTTTTTTTT-------------------------GAGACAG-- Nasalis_larvatus ATTATTAAGAATAATCCTAGAATTAAAA------------------GCATCCAATTTTTTTTTTTTTTTTTTTTT---------------GGAGACAG-- Simias_concolor ATTATTAAGAATAATCCTAGAATTAAAA------------------GCATCCAATTTTTTTTTTTTTTTTTTTT-----------------GAGACAG-- Rhinopithecus_avunculus ATTATTAAGAATAATCCTAGAATTAAAA------------------GCATCCAATTTTTTTTTTTTTTTTT--------------------GAGACAG-- Trachypithecus_obscurus ATTATTAAGAATAATCTTAGAATTAAAA------------------GCATCCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAG-- Semnopithecus_entellus ATTATTAAGAATAATCTTAGAATTAAAA------------------GCATCCAATTTTTTTTTTTTTTTTTTTTT----------------GAGACAG-- Homo_Sapiens TTCTGTTCTGTCACGCAGGCTGGA----GTGCA---GTGGCATGATCTGAGCTCACTGCATCCTCC--TTCCTGGGTTCAGGCCATTCTCCCACCTCAAC Pan_troglodytes TTCTGTTCTGTCACGCAGGCTGGA----GTGCA---GTGGCATGATCTGAGCTCACTGCATCCTCC--TTCCTGGGTTCAGGCCATTCTCCCACCTCAAC Pongo_abelii TCTTGTTCTGTCACGCGGGCTGGA----GTGCA---GTGGCATGATCTGAGCTCACTGCATTCTCC--TCTCTGGGTTCAGGCCATTCTCCCACCTCAGT Macaca_sylvanus TCTTGCTGTGTCTCGCAGGCTGGA----GTGCA---GTGGCATGATCTCAGCTTGCTGCATCTTCCACTTTCTGGGTTCAAGCCATTCTCTCACCTCAAC Theropithecus_gelada TCTTGCTGTGTCTCTCAGGCTGGA----GTGCA---GTGGCATGATCTCAGCTTGCTGCATCCTCCACTTTCTGGGTTCAAGCCATTCTCCCACCTCAAC Papio_hamadryas TCTTGCTGTGTCTCTCAGGCTGGA----GTGCA---GTGGCATGATCTCAGCTTGCTGCATCCTCCACTTTCTGGGTTCAAGCCATTCTCCCACCTCAAC Chlorocebus_aethiops TCTTGCTGTGTCTCGCAGGCTGGA----GTGTA---GTGGCATGATCTCAGCTTGCTGCATCCTCCACTTTCTGGGTTCAAGCCATTCTCCCACCTCAAC Colobus_guereza TCTTGCTCTGTTACGCAGGCTGGA----GTGCA---GTGGCATGATCTCAGCTTGCTGCATCCTCCACTTTCTGGGTTCAAGCCGTTCTCCCACCTCAAC Piliocolobus_badius TCTTGCTCTGTCACGCAGGCTGGATGGAATGCA---GTGGCATGATCTCAGCTTGCTACATCCTCCACTTTCTGGGTTCAAGCCATTCTCCCACCTCAAC Procolobus_verus TCTTGCTCTGTCACGCAGGCTGGATGGAATGCA---GTGGCATGATCTCAGCTTGCTGCATCCTCCACTTTCTGGGTTCAAGCCATTCTCCCACCTCAAC Presbytis_melalophos TCTTGCTCTGTCATGCAGCCTGGA----GTGCA---GTGGCATGATCTCAGCTTGCTGCATCCTCCAGTTTCTGGGTTCAAGCCATTCTCCCACCTCAAC Pygathrix_nemaeus TCTTGCTCTGTCACGCAGGCTGGT----GTGCA---GTGGCATGATCTCAGCTTGCTGCATCCTCCACTTTCTGGGTTCAAGCCATTCTCCCACCTCAAC Nasalis_larvatus TCTTGTTCTGTCACGCAGGCTGGA----GTGCA---GTGGCATGATCTCAGCTTGCTGCATCCTCCACTTTCTGGGTTCAAGCCATTCTCCCACCTCAAC Simias_concolor TCTTGCTCTGTCACGCAGGCTGGA----GTGCA---GTGGCATGATCTCAGCTTGCTGCATCCTCCACTTTCTGGGTTCAAGCCATTCTCCCACCTCAAC Rhinopithecus_avunculus TCTTGCTCTGTCACGCAGGCTGGA----GTGCACTCGTGGCATGATCTCAGCTTGCTGCATCCTCCACTTTCTGGGTTCAAGCCATTCTCCCACCTCAAC Trachypithecus_obscurus TCTTGCTCTGTCACGCAGGCTGGA----GTGCA---GTGGTATGATCTCAGCTTGCTGCATCCTCCACTTTCTGGGTTCAAGCCATTCTCCCACGTCAAC Semnopithecus_entellus TCTTGCTCTGTCACGCAGGCTGGA----GTGCA---GTGGTATGATCTCAGCTTGCTGCATCCTCCACTTTCTGGGTTCAAGCCATTCTCCCACGTCAAC Homo_Sapiens CTCTTAAGTAGCTGGGACTACAGGTGCACACCACCACACCCAGCTCATTTTTGTACTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTC Pan_troglodytes CTCTTAAGTAGCTGGGACTACAGGTGCACACCACCACACCCAGCTCATTTTTGTACTTTTAGTAGAGACAGGGTTTTGCCATGTTGGCCAGGCTGGTCTC Pongo_abelii GTCTTAAGTAACTGGGACTACAGGCGCACACCACCACACCCAGCTGATTTTTGTACTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCTAGGCTGGTCTC Macaca_sylvanus CTGTTAAGTAGCTGGGACTACAGGCGCACACTAACACACCCAGCCCATTTTTGTACTTCTAGTAGAGAC--GGTTTCACCATGTTGGCCAGGCTGGCCTC Theropithecus_gelada CTGTTAAGTAGCTGGGACTACAGGCGCACACTAACACACCCAGCCCATTTTTGTACTTCTAGTAGAGAC--GGTTTGACCATGTTGGCCAGGCTGGCCTC Papio_hamadryas CTGTTAAGTAGCTGGGACTACAGGCGCACACTAACACACCCAGCCCATTTTTGTACTTCTAGTAGAGAC--GGTTTCACCATGTTGGCCAGGCTGGCCTC Chlorocebus_aethiops CTGTTAAGTAGCTGGGACTACAGGTGCACACTACCACACCCAGCCCATTTTTGTACTTCTAGTAGAGAC--GGTTTCACCATGTTGGCCAGGCTGGCCTC Colobus_guereza CTGTTAAGTAGCTGGGACTACAGGTGCACATTACCACACCCAGCCCATTTTTGTATTTATAGTAGAGAC--GGTTTCACCATGTTGGCCAGGCTGGCCTC Piliocolobus_badius CTGTTAAGTAGCTGGGACTACAGGTGCACATTACCACACCCAACCCATTTTTGTATTTATAGTAGAGAT--GGTTTCACCATGTTGGCCAGGCTGGCCTC Procolobus_verus CTGTTAAGTAGCTGGGACTACAGGTGCACATTACCACACCCAGCCCATTTTTGTATTTATAGTAGAGAT--GGTTTCACCATGTTGGCCAGGCTGGCCTC Presbytis_melalophos CTGTTAAGTAGCTGGGACTACAGGTGCACATTACCACACCCAGCCCATTTTTGTATTTATAGTAGAGAC--GGTTTCACCATGTTGGCCAGGCTGGCCTC Pygathrix_nemaeus CTGTTAAGTAGCTGGGACTACAGGTGCACATTACCACACCCAGCCCATTTTTGTATTTATAGTAGAGAC--GGTTTCACCATGTTGGCCAGGCTGGCCTC Nasalis_larvatus CTGTTAAGTAGCTGGGACTACCGGTGCACATTACCACACCCAGCACATTTTTGTATTTATAGTAGAGAT--GGTTTCACCATGTTGGCCAGGCTGGCCTC Simias_concolor CTGTTAAGTAGCTGGGACTACCGGTGCACATTACCACACCCAGCACATTTTTGTATTTATAGTAGAGAT--GGTTTCACCATGTTGGCCAGGCTGGCCTC Rhinopithecus_avunculus CTGTTAAGTAGCTGGGACTGCAGGTGCACATTACCACACCCAGCCCATTTTTGTATTTATAGTAGAGAC--GGTTTCACCATGTTGGCCAGGCTGGCCTC Trachypithecus_obscurus CTGTTAAGTAGCTGGGACTACAGGTGCACATTACCACACCCAGCCCATTTTTGTATTTATAGTAGAGAC--GGCTTCACCATGTTGGCCAGGCTGGCCTC Semnopithecus_entellus CTGTTAAGTAGCTGGGACTACAGGTGCACATTACCACACCCAGCCCATTTTTGTATTTATAGTAGAGAC--GGCTTCACCATGTTGGCCAGGCTGGCCTC Homo_Sapiens AAATTCCTGATCTCAAGTGATCTTC---ATGCCTT-AGCCTCCCAGA-GTGCTGGGACTACAGGCATCAGCCACCATACCTGGCCTCCAAAAACTTTTTT Pan_troglodytes AAATTCCTGATCTCAAGTGATCTTC---ATGCCTT-AGCCTCCCAGA-GTGCTGGGACTACAGGCATCAGCCACCATACCTGGCCTCCAAAAACTTTTTT Pongo_abelii AAATTCCTGATCTCAAGTGATCTTCTTCACACCTT-AGCCTCCCAGA-GTGCTGGGACTACAGGCATCAGCCACCATACCTGGCCTCCAAAAACTTTTTT Macaca_sylvanus AAATTCCTGATCTCAAGTGATCTTC---ATGTCTTTAGCCTCTCAAA-GTCCTGGGACAACAGGCATCCGCCACCGTGCCCGGCCTCCAAAAACTTCTTT Theropithecus_gelada AAATTCCTGATCTCAAGTGATCTTC---ATGCCTTTAGCCTCTCAAAAGTCCTGGGACTACAGGCATCCGCCACCGTGCCCGGCCTCCAAAAACTTCTTT Papio_hamadryas AAATTCCTGATCTCAAGTGATCTTC---ATGCCTTTAGCCTCTCAAAAGTCCTGGGACTACAGGCATCCGCCACCGTGCCCGGCCTCCAAAAACTTCTTT Chlorocebus_aethiops AAATTCCTGATCTCAGGTGATCTTC---ATGCCTTTAGCCTCTCAAA-GTCCTGGGACTACAGGCGTCTGCCACCGTGCCCGGCCTCCAAAAACTTCTTT Colobus_guereza AAATTCCTGATCTCGAGTGATCTTC---ATGCCTT-AGCCTCCCAAA-GTCCTGGGACTAGAGGCATCCGCCACCGTGCCCAGCCTCCAAATACTTCTCT Piliocolobus_badius AAATTCCTGATCTCAAGTGATCTTC---ATGCCTT-AACCTCCCAAA-GTCCTGGGACTACAGGCATCCGCCCCTGTGCCCGGCCTCCAAATACTTCTTT Procolobus_verus AAATTCCTGATCTCAAGTGATCTTC---ATGCCTT-AGCCTCCCAAA-GTCCTGGGACTACAGGCATCCGCCCCTGTGCCCGGCCTCCAAATACTTCTTT Presbytis_melalophos AAATTCCTGATCTCAAGTGATCTTA---ATGCCTT-AGCCTCCCAAA-GTCCTGGGACTACAGGCATCCGCCACCGTGCCCGGCCTCCAAATACTTCTTT Pygathrix_nemaeus AAATTCCTGATCTCAAGTGATCTTC---ATGCCTT-AGCCTCCCAAA-GTCCTGGGACTACAGGCATCCGCCACCGTGCCCGGCCTCCAAATACTTCTTT Nasalis_larvatus AAATTCCTGATCTCAAGTGATCTTC---ATGCCTT-AGCCTCCCAAA-GTCCTGGGACTACAGGCATCCGCCGCCGTGCCCGGCCTCCAAATACTTCTTT Simias_concolor AAATTCCTGATCTCAAGTGATCTTC---ATGCCTT-AGCCTCCCAAA-GTCCTGGGACTACAGGCATCCGCCGCTGTGCCCGGCCTCCAAATACTTCTTT Rhinopithecus_avunculus AAATTCCTGATCTCAAGTGATCTTC---ATGCCTT-AGCCTCCCAAA-GTCCTAGGACTACAGGCATCCGCCACCGTGCCCGGCCTCCAAATACTTCTTT Trachypithecus_obscurus AAATTCCTGATTTCAAGTGATCTTC---AGGCCTT-AACCTCCCAAA-GTCCTGGGACTACAGGCATCCGCCACTGTGCCCGGCCTCCAAATACTTCTTT Semnopithecus_entellus AAATTCCTGATTTCAAGTGATCTTC---AGGCCTT-AGCCTCTCAAA-GTCCTGGGACTACAGGCATCCGCCACTGTGCCCGGCCTCCAAATACTTCTTT Homo_Sapiens CAATGTAGATTAAACCCAGGCATTTTCTTAAAAAA-TGCCATGAATCTTTTACTGAAATCATAGCATCTGTAAACTAAATCAGACAGTTTAGTTGGTTAC Pan_troglodytes CAATGTAGATTAAACCCAGGCATTTTCTTAAAAAA-TGCCATGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTTTAGTTGGTTAC Pongo_abelii CAATGTAGATTAAACCCAGGCATTTTCTTAAAAAA-TGCCACGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTTTAGTTGGTTAC Macaca_sylvanus CAGTGTAGAACAAACCCAGGCATTTTCTTAAAAAA-TGCCATGAATCTTTTACTGAAATCATAGCATCTGTAAAACAAATCAGACAGTT-----GGTTAC Theropithecus_gelada CAGTGTAGAACAAACCCAGGCATTTTCTTTAAAAA-TGCCATGAATCTTTTACTGAAAT---GGCGTCTGTAAAACAAATCAGACAGTT-----GGTTAC Papio_hamadryas CAGTGTAGAACAAACCCAGGCATTTTCTTTAAAAA-TGCCATGAATCTTTTACTGAAATCATAGCGTCTGTAAAACAAATCAGACAGTT-----GGTTAC Chlorocebus_aethiops CAGTGTAGAACAAACCCAGGCATTTTCTTAAAAAAATGCCATGAAGCTTTTACTGAAATCATAGCATCTGTAAAACAAATCAGACAGTT-----GGTTAC Colobus_guereza CAGTGTAGAACAGACCCAGGCATTTTCTTAAGAAA-TGCCGTGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTT-----GGTTAC Piliocolobus_badius CAGTGTAGAACAGACCCAGGCATTTTCTTAAGAAA-TGCTGTGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTT-----GGTTAC Procolobus_verus CAGTGTAGAACAGACCCAGGCATTTTCTTAAGAAA-TGCCGTGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTT-----GGTTAC Presbytis_melalophos CAGTGTAGAACAGACCCAGGCATTTTCTTAAGAAA-TGCCGTGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTT-----GGTTAC Pygathrix_nemaeus CAGTGTAGAACAGACCCAGGCATTTTCTTAAGAAA-TGCTGTGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTT-----GGTTAC Nasalis_larvatus CAGTGTAGAACAGACCCAGGCATTTTCTTAAGAAA-TGCCGTGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTT-----GGTTAC Simias_concolor CAGTGTAGAACAGACCCAGGCATTTTCTTAAGAAA-TGCCGTGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTT-----GGTTAC Rhinopithecus_avunculus CAGTGTAGAACAGACCCAGGCATTTTCTTAAGAAA-TGCCGTGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTT-----GGTTAC Trachypithecus_obscurus CAGTGTAGAACAGACCCAGGCATTTTCTTAAGAAA-TGCCGTGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTT-----GGTTAC Semnopithecus_entellus CAGTGTAGAACAGACCCAGGCATTTTCTTAAGAAA-TGCCGTGAATCTTTTACTGAAATCATAGCATCTGTAAACCAAATCAGACAGTT-----GGTTAC Homo_Sapiens TTCCATTAATATGTTAGTATAAAACAGAAATTGCGA---------------------------------------------------------------- Pan_troglodytes TTCCATTAATATGTTAGTATAAAACAGAAATTGCGA---------------------------------------------------------------- Pongo_abelii TTCCATTAATATGTTAGTATAAAACAGAAATTGCTA---------------------------------------------------------------- Macaca_sylvanus TTCCATTAATATGTTAGTATAAAACCGAAATTGCAA---------------------------------------------------------------- Theropithecus_gelada TTCCATTAATATGTTAGTATAAAACAGAAATTGCAA---------------------------------------------------------------- Papio_hamadryas TTCCATTAATATGTTAGTATAAAACAGAAATTGCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTGGCTCTGTCGCCCGGGCTGGA Chlorocebus_aethiops TTCTGTTAATGTGTTAGTATAAAACAGAAATTGCAA---------------------------------------------------------------- Colobus_guereza TTCCATTAATATGTTAATATAAAACAGAAATTACAA---------------------------------------------------------------- Piliocolobus_badius TTCCATTAATATGTTAGTATAAAACAGAAATTGCAA---------------------------------------------------------------- Procolobus_verus TTCCATTAATATGTTAGTATAAAACAGAAATTGCAA---------------------------------------------------------------- Presbytis_melalophos TTCCATTAATATGTTAGTATAAAACAGAACTTGCAA---------------------------------------------------------------- Pygathrix_nemaeus TTCCATTAATATGTTAGTATAAAACAGAAATTGCAA---------------------------------------------------------------- Nasalis_larvatus TTCCGTTAATATGTTAGTATAAAACAGAAATTGCAA---------------------------------------------------------------- Simias_concolor TTCCATTAATATGTTAGTATAAAACAGAAATTGCAA---------------------------------------------------------------- Rhinopithecus_avunculus TACCATTAATATGTTAGTATAAAACAGAAATTGCAA---------------------------------------------------------------- Trachypithecus_obscurus TTCCATTAATATGTTAGTATAAAACAGAAATTGCAA---------------------------------------------------------------- Semnopithecus_entellus TTCCATTAATATGTTAGTATAAAACAGAAATTGCAA---------------------------------------------------------------- Homo_Sapiens ---------------------------------------------------------------------------------------------------- Pan_troglodytes ---------------------------------------------------------------------------------------------------- Pongo_abelii ---------------------------------------------------------------------------------------------------- Macaca_sylvanus ---------------------------------------------------------------------------------------------------- Theropithecus_gelada ---------------------------------------------------------------------------------------------------- Papio_hamadryas GTGCAGTGGCCGGATCTCAGCTCACTGCAAGCTCTGCCTCCGGGGTTTACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCGCC Chlorocebus_aethiops ---------------------------------------------------------------------------------------------------- Colobus_guereza ---------------------------------------------------------------------------------------------------- Piliocolobus_badius ---------------------------------------------------------------------------------------------------- Procolobus_verus ---------------------------------------------------------------------------------------------------- Presbytis_melalophos ---------------------------------------------------------------------------------------------------- Pygathrix_nemaeus ---------------------------------------------------------------------------------------------------- Nasalis_larvatus ---------------------------------------------------------------------------------------------------- Simias_concolor ---------------------------------------------------------------------------------------------------- Rhinopithecus_avunculus ---------------------------------------------------------------------------------------------------- Trachypithecus_obscurus ---------------------------------------------------------------------------------------------------- Semnopithecus_entellus ---------------------------------------------------------------------------------------------------- Homo_Sapiens ---------------------------------------------------------------------------------------------------- Pan_troglodytes ---------------------------------------------------------------------------------------------------- Pongo_abelii ---------------------------------------------------------------------------------------------------- Macaca_sylvanus ---------------------------------------------------------------------------------------------------- Theropithecus_gelada ---------------------------------------------------------------------------------------------------- Papio_hamadryas ACCTCACCCGGCTAGTTTTTTATGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTCGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCGCCCGTCT Chlorocebus_aethiops ---------------------------------------------------------------------------------------------------- Colobus_guereza ---------------------------------------------------------------------------------------------------- Piliocolobus_badius ---------------------------------------------------------------------------------------------------- Procolobus_verus ---------------------------------------------------------------------------------------------------- Presbytis_melalophos ---------------------------------------------------------------------------------------------------- Pygathrix_nemaeus ---------------------------------------------------------------------------------------------------- Nasalis_larvatus ---------------------------------------------------------------------------------------------------- Simias_concolor ---------------------------------------------------------------------------------------------------- Rhinopithecus_avunculus ---------------------------------------------------------------------------------------------------- Trachypithecus_obscurus ---------------------------------------------------------------------------------------------------- Semnopithecus_entellus ---------------------------------------------------------------------------------------------------- Homo_Sapiens -----------------------------------------CAGATACA----GCATTTTATATCTGCTATGTTTACTTCTGTATTTACTTGTATTTGAT Pan_troglodytes -----------------------------------------CAGATACA----GCATTTTATATCTGCTATGTTTACCTCTGTATTTACTTGTATTTGAT Pongo_abelii -----------------------------------------CAGATACATACAGCATTTTGTATCTGCTGTGTTTACTTCTGTATTTACTTGTATTTGAT Macaca_sylvanus -----------------------------------------CAGATACA----GCGTTTTATGCCTGCTATGTTTACTTCTGTATTTAGTTGTATTTGAT Theropithecus_gelada -----------------------------------------CAGATACA----GCGTTTTATGCCTGCTATGTTTACTTCTGTGTTTACTTGTATTTGAT Papio_hamadryas CGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCCGGCCCAGATACA----GCGTTTTATGCCTGCTATGTTTACTTCTGTGTTTACTTGTATTTGAT Chlorocebus_aethiops -----------------------------------------CAGATACA----GCGTTTTATGCCTGCTATGTTTACTTCTATATATACTTGTATTTGAT Colobus_guereza -----------------------------------------CAGATACA----GCGTTTTATGCCTGGTATGTTTACTTCTGTATTTACTTGTATTTGAT Piliocolobus_badius -----------------------------------------CAGATAGA----GCGTTTTATGCCTGCTATGTTTACTTCTATATTTACTTGTATTTGAT Procolobus_verus -----------------------------------------CAGATACA----GCGTTTTATGCCTGCTATGTTTACTTCTATATTTACTTGTATTTGAT Presbytis_melalophos -----------------------------------------CAGATATA----GCATTTTATGCCTGCTATGTTTACTTCTATATTTACTTGTACTTGAT Pygathrix_nemaeus -----------------------------------------CACATACA----GCATTTTATGCCTGCTATGTTTACTTCTATATTTACTTGTATTTGAT Nasalis_larvatus -----------------------------------------CAGATACA----GCGTTTTATGCCTGCTATGTTTACTTATATATTTACTTGTATTTGAT Simias_concolor -----------------------------------------CAGATACA----GCGTTTTATGCCTGCTATGTTTACTTATATATTTACTTGTATTTGAT Rhinopithecus_avunculus -----------------------------------------CAGATACA----GCGTTTTATGCCTGCTATGTGTACTTCTATATTTACTTGTATTTGAT Trachypithecus_obscurus -----------------------------------------CAGATACA----GCGTTTTATGCCTGCTATGTTTACTTCTATATTTACTTGTATTTGAT Semnopithecus_entellus -----------------------------------------CAGATACA----GCGTTTTATGCCTGCTATGTTTACTTCTATATTTACTTGTATTTGAT Homo_Sapiens TAACCTGGTTAAATTTCTTGGCAGTTTAGCGATATTGACATGGGAGAA Pan_troglodytes TAACCTGGTTAAATT-CTTGGCAGTTTGGCGATATTGACATGGGAGAA Pongo_abelii TAACCTGGTTAAATTTCTCGGCAGTTTAGCGATATTGACATGGAGAAA Macaca_sylvanus TAACCTGGTTGAATTTCTTTGCAGTTTAGCGATATTGACATGGAGAAA Theropithecus_gelada TAACCTGGTTGAATTTCTTTGCAGTTTAGCGATATTGACATGGAGAAA Papio_hamadryas TAACCTGGTTGAATTTCTTTGCAGTTTAGCGATATTGACATGGAGAAA Chlorocebus_aethiops TAACCTGGTTGAATTTCTTTGCAGTTTAGCGATATTGACATGGAGAAA Colobus_guereza TAATCTGGCTAAATTTCTTGGCAGTTTAACGATATTGACATGGAGAAA Piliocolobus_badius TAACCTGGCTAAATTTCTTGGCAGTTTAATGATATTGACATGGAGAAA Procolobus_verus TAACCTGGCTAAATTTCTTGGCAGTTTAATGATATTGACATGGAGAAA Presbytis_melalophos TAACCTGGCTAAATTTCTTGGCAGTTTAACGATATTGACATGGAGAAA Pygathrix_nemaeus TAATCTGGCTAAATTTCTTGGCAGTTTAATGATATTGACATGGAGAAA Nasalis_larvatus TAACCTGGCTAAATTTCTTGGCAGTTTAATGATATTGACATGGAGAAA Simias_concolor TAACCTGGCTAAATTTCTTGGCAGTTTAATGATATTGACATGGAGAAA Rhinopithecus_avunculus TAACCTGGCTAAATTTCTTGGCAGTTTAATGATATTGACATGGAGAAA Trachypithecus_obscurus TAACCTGGCTAAATTTCTTGGCAGTTTAACGATATTGACATGGAGAAA Semnopithecus_entellus TAACCTGGCTAAATTTCTTGGCAGTTTAACGATATTGACATGGAGAAA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1048; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1048; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1048; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1299484746844; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1513742373459134353; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3678247231741545893; mqVersion 274; checksumv 0 2 3682297793 null getNumChars 1048 numChars 1048 getNumTaxa 17 numTaxa 17 short true bits 15 states 15 sumSquaresStatesOnly 301699.0 sumSquares 301699.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 512; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1414 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1513742373459134353 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1513742373459134353; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 902 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3678247231741545893 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 902 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;