#NEXUS [written Mon Mar 07 12:46:59 CET 2011 by Mesquite version 2.74 (build 550) at C007STAM0004/172.16.10.35] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS Homo_sapiens Pan_troglodytes Pongo_abelii Macaca_sylvanus Papio_hamadryas Theropithecus_gelada Chlorocebus_aethiops Colobus_guereza Piliocolobus_badius Procolobus_verus Presbytis_melalophos Pygathrix_nemaeus Nasalis_larvatus Simias_concolor Rhinopithecus_avunculus Trachypithecus_obscurus Semnopithecus_entellus ; END; BEGIN CHARACTERS; TITLE SRY; DIMENSIONS NCHAR=786; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX Homo_sapiens AGGGGGTAGGCTGGTTGGGCGGGGTTGAG-GGGGTGTTGAGGGCGGAGAAATGCAAGTTTCATTACAAAAGTTAACGTAACAAAGAATCTGGTAGAAGTG Pan_troglodytes AGGGGGTAGGCTGGTTGGGAGGGGTTGAG-GGGGTGTTGAGGGCGGAGAAATGAAAGTTTCATTACAAAAGTTAACGTAACAAAGAACCTGGTAGAAGTG Pongo_abelii AGGGGGTAGACTGGTTGGGCGGGGTTGAGAGGGGTGTTGGGGGCGGAGAAATGAAAGTTTCATTACAAAAGTTAACGTAACAAAGAATCTGGTAGTAGTG Macaca_sylvanus AGGGGGTAGCCTGGTTGGGCGGAGTTGAGAGGGGTGTTGGGGGCGGAGAAATGAAAGTTTCATTACAAAAGTTAAGGTAACAAAGAATCTGGTAGAAGTA Papio_hamadryas AGGGGGTAGCCTGGTTGGGCGGAGTTGAGAGGGGTGTTGGGGGCGGAGAAATGAAAGTTTCATTACAAAAGTTAAGGTAACAAAGAATCTGGTAGAAGTA Theropithecus_gelada AGGGGGTAGCCTGGTTGGGCGGAGTTGAGAGGGGTGTTGGGGGCGGAGAAATGAAAGTTTCATTACAAAAGTTAAGGTAACAAAGAATCTGGTAGAAGTA Chlorocebus_aethiops AGGGGGTAGCCTGGTTGGGCGGAGTTGAGAGGGGGGTTGGGGGCGGAGAAATGAAAGTTTCATTACAAAAGTTAAGCTAACAAAGAATCTGGTAGAAGTA Colobus_guereza AGGGGGTAAGCTGGTTGGGCGGAGTTGAGAGGGGTGTTGGGGGCGGAGAAATGAAAGTTTCATTACAAAAGTTAAGGTAACAAAGAATCTGGTAGAAGTA Piliocolobus_badius AGGGGGTAAGCTGGTTGGGCGGAGTTGAGAGGGGTATTGGGGGCGGAGAAATGAAAGTTTCATTACAAAAGTTAAGGTAACAAAGAATCTGGTAGAAGTA Procolobus_verus AGGGGGTAAGCTGGTTGGGCGGAGTTGAGAGGGGTATTGGGGGCGGAGAAATGAAAGTTTCATTACAAAAGTTAAGGTAACAAAGAATCTGGTAGAAGTA Presbytis_melalophos AGGGGGTAACCTGGTTGGGCGGAGTTGAGAGGGGTGTTGGGGGCGGAGAAATGAAAGTTGCATTACAAAAGTTAAGGTAACAAAGAATCTGGTGGAAGTA Pygathrix_nemaeus AGGGGGTTAGCTGGTTGGGCGGAGTTGAGAGGGGTGTTGGGGGCGGAGAA-TGAAAGTTTCATTACAAAAGTTAAGGTAACAAAGACTCTGGTAGAAGTA Nasalis_larvatus AGGGGGTTAGCTGGTTGGGCGGAGCTGAGAGGGGTGTTGGGGGCGGAGAA-TGAAAGTTTCATTACAAAAGTTAAGGTAACAAAGAATCTGGTAGAAGTA Simias_concolor AGGGGGTTAGCTGGTTGGGCGGAGCTGAGAGGGGTGTTGGGGGCGGAGAA-TGAAAGTTTCATTACAAAAGTTAAGGTAACAAAGAATCTGGTAGAAGTA Rhinopithecus_avunculus AGGGGGTTAGCTGGTTGGGCGGAGTTGAGAGGGGTGTTGGGGGCGGAGAA-AGAAAGTTTCATTACAAAAGTTAAGGTAACAGAGAATCTGGTAGAAGTA Trachypithecus_obscurus AGGGGGTTAGCTGGTTGGGCGGAGTTGAGAGGGGTGTTGGGGGCGGAGAAATGAAAGTTTCATTACAAAAGTTAAGGTAACAAAGAATCTGGTAGAAGTA Semnopithecus_entellus AGGGGGTTAGCTGGTTGGGCGGAGTTGAGAGGGGTGTTGGGGGCGGAGAAATGAAAGTTTCATTACAAAAGTTAAGGTAACAAAGAATCTGGTAGAAGTA Homo_sapiens AGTTTTGGATAGTAAAATAAGTTTCGAACTCTGGCACCTTTCAATTTTGTCGCACTCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAA Pan_troglodytes AGTTTTGGATAGTAAAATAAGTTTCGAACTCTGGCACCTTTAAATTTTGTCGCACCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAA Pongo_abelii AGTTTTGGATAGTAAAATAAGTTTCGAACTCTGGCACCTTTCAATTTTGTCTCATCCTCCTTGTTTTTCACAATGCAATCATATGCTTCTGCTATGTTAA Macaca_sylvanus AGTTGTGGATAGTAAATTAAGTTTCAAAATCTGGCACCTTTCAGTTTTGTCGCAGCCTGCTTGTTTTTGACAATGCAATCATATGCTTCTGCCATGTTAA Papio_hamadryas AGTTTTGGATAGTAAATTGAGTTTCAAAATCTAGCACCTTTCAGTTTTGTCGCAGCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTACCATGTTAA Theropithecus_gelada AGTTTTGGATAGTAAATTAAGTTTCAAAATCTAGCACCTTTCAGTTTTGTCGCAGCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCCATGTTAA Chlorocebus_aethiops AGTTTTGGATAGTAAATTAAGTTTCAAAATCTGGCACCTTTCAGTTTTGTCGCACCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCCAAGTTAA Colobus_guereza AGTTTTGGATAGTTAATTAAGTTTCCAAATCTGGCACCTTTCAGTTTTGTCGCACCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAA Piliocolobus_badius AGTTTTGGATAGTTAATTAAGTTTCCAAATCTGGCACCTTTCAGTTTTGTCGCACCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAA Procolobus_verus AGTTTTGGATAGTTAATTAAGTTTCCAAATCTGGCACCTTTCAGTTTTGTCGCACCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAA Presbytis_melalophos AGTTTTGGACAGTTAATTAAGTTTCCAAATCTGGCACCTTTCAGCTTTGTCGCACCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAA Pygathrix_nemaeus AGTTTTGGATAGTTAATTAAGTTTCCAAATCTGGCACCTTTCAGTTTTGTCGCACTCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAA Nasalis_larvatus AGTTTTGGATAGTTAATTAAGTTTCCAAATCTGGCACCTTTCAGTTTTGTCGCACCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAA Simias_concolor AGTTTTGGATAGTTAATTAAGTTTCCAAATCTGGCACCTTTCAGTTTTGTCGCACCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAA Rhinopithecus_avunculus AGTTTTGGATAGTTAATTAAGTTTCCAAATCTGGCACCTTTCAGTTTTGTCGCACCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAA Trachypithecus_obscurus AGTTTTGGATAGTTAATTAAGTTTCCAAATCTGACACCTTTCAGTTTTGTCGCACCCTCCTTGTTTTTGACAATGCAATCATATGCTTCTGCTATGTTAA Semnopithecus_entellus AGTTTTGGATAGTTAATTAAGTTTCCAAATCTGGCACCTTTCAGTTTTGTCGCACCCTCCTTGTTTTTGACAACGCAATCATATGCTTCTGCTATGTTAA Homo_sapiens GCGTATTCAACAGCGATGATTACAGTCCAGCTGTGCAAGAGAATATTCCCGCTCTCCGGAGAAGCTCTTCCTTCCTTTGCACTGAAAGCTGTAACTCTAA Pan_troglodytes GCGTATTCAACAGCGATGATTACAGTCCAGCTGTGCAACAGAATATTCCCGCTCTCCGGAGAAGCTCTTCCTTCCTTTGCACTGAAAGCTATAACTCTAA Pongo_abelii GCGTATTCAACAGTGATGATTACAGTCCAGCTGTGCAACAGAATATTCCCGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTATAACTCTAA Macaca_sylvanus GCGTATTTAACACTGATGGTTACAGTCCAGCTGCGCAACAGAATATTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Papio_hamadryas GCGTATTTAACACTGATGGTTACAGTCCAGCTGCGCAACAGAATATTCCTGCTCCCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Theropithecus_gelada GCGTATTTAACACTGATGGTTACAGTCCAGCTGCGCAACAGAATATTCCTGCTCCCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Chlorocebus_aethiops GCGTATTTAACACTGATGGTTACAGTCCAGCTGCGCAACAGAATATTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Colobus_guereza GCGTATTTAACGGTGATGATTGCAGTCCAGCTGCGCAACAGAATGTTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Piliocolobus_badius GGGTATTTAACACTGATGATTACAGTCCAGCTGCGCAACAGAATGTTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Procolobus_verus GCGTATTTAACACTGATGATTACAGTCCAGCTGCGCAACAGAATGTTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Presbytis_melalophos GCGTATTTAACACTGATGATTACAGTCCAGCTGCGCAACAGAATGTTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Pygathrix_nemaeus GCGTATTTAACACTGATGATTACAGTCCAGCTGCGCAACAGAATGTTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Nasalis_larvatus GCGTATTTAACACTGATGATTACAGTCCAGCTGCGCAACAGAATGTTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Simias_concolor GCGTATTTAACACTGATGATTACAGTCCAGCTGCGCAACAGAATGTTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Rhinopithecus_avunculus GCGTATTTAACACTGATGATTACAGTCCAGCTGCGCAACAGAACGTTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Trachypithecus_obscurus GCGTATTTAACACTGATGATTACAGTCCAGcTGCGCAACAGAATGTTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Semnopithecus_entellus GCGTATTTAACACTGATGATTACAGTCCAGcTGCGCAACAGAATGTTCCTGCTCTCCGGAGAAGCTCTTCCTTCATTTGCACTGAAAGCTGTAGCTCTAA Homo_sapiens GTATCAGTGTGAAACGGGAGAAAACAGTAAAGGCAACGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATCGTGTGGTCTCGCGATCAGAGGCGC Pan_troglodytes GTATCAGCGTGAAACGGGAGAAAACAGTAAAGATAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCTTCGTGTGGTCTCGCGATCAGAGGCGC Pongo_abelii GTATCAGTGTGAAACGGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATCGTGTGGTCTCGCGATCAGAGGCGC Macaca_sylvanus GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAATGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Papio_hamadryas GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Theropithecus_gelada GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Chlorocebus_aethiops GTATCACTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Colobus_guereza GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTAGTCTCGCGATCAGAGGCGC Piliocolobus_badius GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Procolobus_verus GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Presbytis_melalophos GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Pygathrix_nemaeus GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Nasalis_larvatus GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Simias_concolor GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Rhinopithecus_avunculus GTATCGGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Trachypithecus_obscurus GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCGACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Semnopithecus_entellus GTATCAGTGTGAAGCAGGAGAAAACAGTAAAGGCAGCGTCCAGGATAGAGTGAAGCgACCCATGAACGCATTCATTGTGTGGTCTCGCGATCAGAGGCGC Homo_sapiens AAGATGGCTCTAGAGAATCCCAGAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACTGAAGCCGAAAAATGGCCATTCT Pan_troglodytes AAGATGGCTCTAGAGAATCCCAGAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACTGAAGCCGAAAAATGGCCATTCT Pongo_abelii AAGATGGCTCTAGAGAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACTGAAGCCGAAAAATGGCCATTCT Macaca_sylvanus AAGATGGCTCTAGAGAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACCGAAGCCGATAAATGGCCATTCT Papio_hamadryas AAGATGGCTCTAGAGAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACCGAAGCCGATAAATGGCCATTCT Theropithecus_gelada AAGATGGCTCTAGAGAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACCGAAGCCGATAAATGGCCATTCT Chlorocebus_aethiops AAGATGGCTCTAGAGAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACCGAAGCCGATAAATGGCCATTCT Colobus_guereza AAGATGGCTCTAGAGAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACCGAAGCCGATAAATGGCCATTCT Piliocolobus_badius AAGATAGCTCTAGAGAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACCGAAGCCGATAAATGGCCATTCT Procolobus_verus AAGATGGCTCTAGAGAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACCGAAGCCGATAAATGGCCATTCT Presbytis_melalophos AAGATGGCTCTAGAGAATCCCAAAATGCGAAACTCGGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACCGAAGCCGATAAATGGCCATTCT Pygathrix_nemaeus AAGATGGCTCTAGAGAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTGACCGAAGCCGATAAATGGCCATTCT Nasalis_larvatus AAGATGGCTCTAGAAAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACCGAAGCCGATAAATGGCCATTCT Simias_concolor AAGATGGCTCTAGAAAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACCGAAGCCGATAAATGGCCATTCT Rhinopithecus_avunculus AAGATGGCTCTAGAGAATCCCAAAATGCTAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAATGCTTACCGAAGCCGATAAATGGCCATTCT Trachypithecus_obscurus AAGATGGCTCTAGAGAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAACGCTTACCGAAGCCGATAAATGGCCATTCT Semnopithecus_entellus AAGATAGCTCTAGAGAATCCCAAAATGCGAAACTCAGAGATCAGCAAGCAGCTGGGATACCAGTGGAAAACGCTTACTGAAGCCGATAAATGGCCATTTT Homo_sapiens TCCAGGAGGCACAGAAATTACAGGCCATGCACAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCCGAAGAATTGCAG Pan_troglodytes TCCAGGAGGCACAGAAATTACAGGCCATGCACAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAACATGCTGCCGAAGAATTGCAG Pongo_abelii TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAGAAGAGTTGCAG Macaca_sylvanus TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAAAACAGTTGCAG Papio_hamadryas TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAAAACAGTTGCAG Theropithecus_gelada TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAAAACAGTTGCAG Chlorocebus_aethiops TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAAAACAGTTGCAG Colobus_guereza TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAGAACAGTTGCAG Piliocolobus_badius TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAAAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAGAACAGTTGCAG Procolobus_verus TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAGAACAGTTGCAG Presbytis_melalophos TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAAAACAGTTGCAG Pygathrix_nemaeus TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAAAACAGTTGCAG Nasalis_larvatus TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAAAACAGTTGTAG Simias_concolor TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAAAACAGTTGTAG Rhinopithecus_avunculus TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAGATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAAAACAGTTGCAG Trachypithecus_obscurus TCCAGGAGGCACAGAAACTGCAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAAAACAGTTGCAG Semnopithecus_entellus TCCAGGAGGCACAGAAACTACAGGCCATGCATAGAGAGAAATACCCGAATTATAAGTATCGACCTCGTCGGAAGGCGAAGATGCTGCAAAACAGTTGCAG Homo_sapiens TTTGCTTCCCGCAGATCCCGCTTCGGTACTCTGCAGCGAAGTG---CAACTGGACAACAGGTTGTACAGGGATGACTGTACGAAAGCCACACACTCAAGA Pan_troglodytes TTTGCTTCCCGCAGATCCCGCTTCGGTACTCTGCAGCGAAGTG---CAACTGGACAACAGGTTGTACAGGGATGACTGTACGAAAGCCACACACTCAAGA Pongo_abelii TTCGCTTCCCGCAGATCCCGCTTCGGTACTCTGCAGCGAAGTGCTGCAACTGGACAACAGGTTGTACAGGGATGACTGTACGAAAGCCACACACTCAAGA Macaca_sylvanus TTTGCTTCCGGTAGATCCCTCTTCGGTACCCTGCAGAGAAGTG---TACA---ACAACAGGTTGTACAGGGATGACTGTACCAAAGCCACGCACTCAAGA Papio_hamadryas TTTGCTTCCGGCAGATCCCTCTTCGGTACCCTGCAGAGAAGTG---TACA---ACAACAGGTTGTACAGGGATGACTGTACCAAAGCCACGCACTCAAGA Theropithecus_gelada TTTGCTTCCAGCAGATCCCTCTTCGGTACCCTGCAGAGAAGTG---TACA---ACAACAGGTTGTACAGGGATGACTGTACCAAAGCCACGCACTCAAGA Chlorocebus_aethiops TTTGCTTCCGGCAGATCCCTCTTCGGTACCCTGCAGAGAAGTG---GAACTGGACAACAGGTTGTACAGGGATGACTGTACCAAAGCCACGCACTCAAGA Colobus_guereza TTTGCTTCCCGCAGATCCTTCTTCGGTACTCTGCAGAAAAATG---GAACTGGACAACAGGTTGTACAGGGATGACTATACCAAAGCCACACACTCAAGA Piliocolobus_badius TTTGCTTCCCGCAGATCCTTCTTCGGTACTCTGCAGAGAAATG---GAACTGGACAACAGGTTGTACAGGGATGACTATACCAAAGCCACACACTCAAGA Procolobus_verus TTTGCTTCCCGCAGATCCTTCTTCGGTACTCTGCAGAGAAATG---GAACTGGACAACAGGTTGTACAGGGATGACTATACCAAAGCCACACACTCAAGA Presbytis_melalophos TTTGCTTCCCGCAGATCCTTCTTCGGTACTCTGCAGAGAAATG---GAACTGGACAACAGGTTGTACAGGGATGACTGTACCAAAGTCACACACTCAAGA Pygathrix_nemaeus TTTGCTTCCCGCAGATCCTTCTTCGGTACTCTGCAGAGAAATG---GAACTGGATAACAGATTGTACAGGGATGACTGTACCAAAGCCACACACTCAAGA Nasalis_larvatus TTTGCTTCCCGCAGATCCTTCTTCGGTACTCTGCAGAGAAATG---GAACTGGACAACAGATTGTACAGGGATGACTGTACCAAAGCCACACACTCAAGA Simias_concolor TTTGCTTCCCGCAGATCCTTCTTCGGTACTCTGCAGAGAAATG---GAACTGGACAACAGATTGTACAGGGATGACTGTACCAAAGCCACACACTCAAGA Rhinopithecus_avunculus TTTGCTTCCCGCAGATCCTTCTTCGGTACTCTGCAGAGAAATG---GAACTGGACAACAGATTGTACAGGGATGACTGTATCAAAGCCACACACTCAAGA Trachypithecus_obscurus TTTGCTTCCAGCAGATCCTTCTTCGGTACTCTGCAGAGAAATG---GAACTGGACAACAGATTGTACAGGGATAACTGTACCAAAGCCACACACTCAAGA Semnopithecus_entellus TTTGCTTCCAGCAGATCCTTCTTCGGTACTCTGCAGAGAAATG---GAACTGGACAACAGATTGTACAGGGATAACTGTACCAAAGCCACACACTCAAGA Homo_sapiens ATGGAGCACCAGCTAGGCCACTTACCGCCCATCAACGCAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTGGACAAAGCT Pan_troglodytes ATGGAGCACCAGCTAGGCCACTTACCGCCCATCAACGCAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTGGACAAAGCT Pongo_abelii CTGGAGCACCAGCTAGGCCACTTACCGCCCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTCGACAGAGCT Macaca_sylvanus ATGCAGCACCAGTTAGGCCACTTACCGCCCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTCGACAAAGCT Papio_hamadryas ATGCAGCACCAGTTAGGCCACTTACCGCTCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTCGACAAAGCT Theropithecus_gelada ATGCAGCACCAGTTAGGCCACTTACCGCTCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTCGACAAAGCT Chlorocebus_aethiops ATGCAGCACCAGTTAGGCCACTTACCGCCCATCAACACAGCCAGCTCACCGCAGCAATGGGACCGCTACAGCCACTCGACAAAGCT Colobus_guereza ATG------CAGCTAGGCCACTTACCGCCCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTCGACAAAGCT Piliocolobus_badius ATG------CAGCTAGGCCACTTACCGCCCATCAACACAGCCAGCTCACGGCAGCCACGGGACCGCTACAGCCACTCGACAAAGCT Procolobus_verus ATG------CAGCTAGGCCACTTACCGCCCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTCGACAAAGCT Presbytis_melalophos ATG------CAGCTAGGCCACTTACCGCCCATCAACACAGCCAGCTCGCCGCAGCAACGGGACCGCTACAGCCACTCGACAAAGCT Pygathrix_nemaeus ATG------CAGCTAGGCCACTTACCGCCCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTCGACAAAGCT Nasalis_larvatus ATG------CAGCTAGGCCACTTACCGCCCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTCGACAAAGCT Simias_concolor ATG------CAGCTAGGCCACTTATCGCCCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTCGACAAAGCT Rhinopithecus_avunculus ATG------CAGCTAGGCCACTTACCGCCCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTACAGCCACTCGACAAAGCT Trachypithecus_obscurus ATG------CAGCTAGGCCACTTACCGCCCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTATAGCCACTCGACAAAGAT Semnopithecus_entellus ATG------CAGCTAGGCCACTTACCGCCCATCAACACAGCCAGCTCACCGCAGCAACGGGACCGCTATAGCCACTCGACAAAGAT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 786; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 786; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 786; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1299498419210; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7370998203245074289; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4109221418634667623; mqVersion 274; checksumv 0 2 2358081721 null getNumChars 786 numChars 786 getNumTaxa 17 numTaxa 17 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 258306.0 sumSquares 217440.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 512; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1236 500; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4109221418634667623 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 180; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 724 433; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;