#NEXUS [written Mon Mar 07 13:50:41 CET 2011 by Mesquite version 2.74 (build 550) at C007STAM0004/172.16.10.35] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS Homo_sapiens Pan_troglodytes Pongo_abelii Papio_hamadryas Theropithecus_gelada Macaca_sylvanus Chlorocebus_aethiops Colobus_guereza Piliocolobus_badius Procolobus_verus Presbytis_melalophos Pygathrix_nemaeus Nasalis_larvatus Simias_concolor Rhinopithecus_avunculus Trachypithecus_obscurus Semnopithecus_entellus ; END; BEGIN CHARACTERS; TITLE vWF11; DIMENSIONS NCHAR=938; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX Homo_sapiens CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGCTTTGCCAGCCCGGCT Pan_troglodytes CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGCTTTGCCAGCCCGGCT Pongo_abelii CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGRCCACTCCTTCTCCATTGTCATTGAGACCGTCCAGGTGAGCTTTACCAGCCCGGCA Papio_hamadryas TTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCATTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGTTTTGCCAGCCCGGCG Theropithecus_gelada CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACCGTCCAGGTGAGTTTTGCCAGCCCGGCG Macaca_sylvanus CTTCAGTGGGATCTGCCAGTACTTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACCGTCCAGGTGAGTTTTGCCAGCCTGGCG Chlorocebus_aethiops CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACCGTCCAGGTGAGTTTTGCCAGCCCGGCR Colobus_guereza CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGTTTTGCCAGCCCGGCG Piliocolobus_badius CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACCGTCCAGGTGAGTTTTGCCAGCCCGGCG Procolobus_verus CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGTTTTGCCAGCCTGGCG Presbytis_melalophos CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGTTTTGCCAGCCCGGCG Pygathrix_nemaeus CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGTTTTGCCAGCCCGGCG Nasalis_larvatus CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGTTTTGCCAGCCTGGTG Simias_concolor CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGTTTTGCCAGCCTGGTG Rhinopithecus_avunculus CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGTTTTGCCAGCCCGGCG Trachypithecus_obscurus CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGTTTTGCCAGCCCGGCG Semnopithecus_entellus CTTCAGTGGGATCTGCCAGTACCTGCTGGCCCGGGATTGCCAGGACCACTCCTTCTCCATTGTCATTGAGACTGTCCAGGTGAGTTTTGCCAGCCTGGCG Homo_sapiens GCTGGTCGGGTGGTAGCCCAAGGTGCTGCATAGCTGCTAGGCTGAATGGGCAGTCCCTGGAAGGCGTGGGGCATTGCTTTCTGTGCATGAGGGAGGTCTC Pan_troglodytes GCTGGTCGGGTGGTAGCCCAAGGTGCTGCATAGCTGCTAGGCTGAATGGGCAGCCCCTGGAAGGCGTGGGGCATTGCTTTCTGTGCATGAGGGAGGTCTC Pongo_abelii GCTGGTCGGGTGGTAGCCCAAGGTGCTGCGTAGCTGCTAGGCTGAGTGGGCAGCCCCTGGAAGGCATGGCGCATTGCTTTCTGTGCATGAGGGAGGTCTC Papio_hamadryas GCGGGTCGGGTGGCAGCCCGAGGTGCTGCATAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAGGCGTGGACCACTGCTTTCTGTGCACGAGGGAGGTCTC Theropithecus_gelada GCTGGTCGGGTGGCAGCCCGAGGTGCTGCATAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAGGCGTGGACCACTGCTTTCTGTGCACGAGGGAGGTCTC Macaca_sylvanus GCTGGTCGGGTGGCAGCCCGAGGTGCTACATAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAGGTGTGGACCACTGCTTTCTGTGCACGAGGGAGGTCTC Chlorocebus_aethiops GCTGGTYGGGTGGCAGCCCAAGGTGCTGCATAGCTGCTGGGCTGAGTGGGCAGCCCCTGAAAGGCATGGGCCATTGCTTTCTGTGCACGAGGGAGGTCTC Colobus_guereza GCTGGTCGGGTGGCAGCCCAAGGTGCTGCATAGCTGCTGGGCTGAGTGTGCAGCCCCTGGAAGGCGTGGGCCGTTGCTTTCTGTGCACGAGGGAGGTCTC Piliocolobus_badius GCTGGTCGGGTGGCAGCCCAAGGTGCTGCATAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAGGTGTGGGCCGTTGCTTTCTGTGCACGAGGGAGGTCTC Procolobus_verus GCTGGTCGGGTGGCAGCCCAAGGTGCTGCATAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAGGCGTGGGCCGTTGCTTTCTGTGCACGAGGGAGGTCTC Presbytis_melalophos GCTGGTCAGGCGGCAGCCCAAGGTGCTGCATAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAG---TGGGCCGTTGCTTTCTGTGCACGAGGGAGGTCTC Pygathrix_nemaeus GCTGGTCAGGTGGCAGCCCAAGGTGCTGCATAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAG---TGGGCCGTTGCTTTCTGTGCAC-AGGGAGGTCTC Nasalis_larvatus GCTGGTCAGGTGGCAGCCCAAGGTGCTGCATAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAG---TGGGCCGTTGCTTTCTGTG-ACGAGGGAGGTCTC Simias_concolor GCTGGTCAGGTGGCAGCCCAAGGTGCTGCATAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAG---TGGGCCGTTGCTTTCTGTGCACGAGGGAGGTCTC Rhinopithecus_avunculus GCTGGTCAGGTGGCAGCCCAAGGTGCTGCAGAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAG---TGGGCCGTTGCTTTCTGTGCACGAGGGAGGTCTC Trachypithecus_obscurus GCTGGTCAGGTGGCAGCCCAAGGTGCTGCATAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAG---TGGGCCGTTGCTTTCTGTGCACGAGGGAGGTCTC Semnopithecus_entellus GCTGGTCAGGTGGCAGCCCAAGGTGCTGCATAGCTGCTGGGCTGAGTGGGCAGCCCCTGGAAG---TGGGCCGTTGCTTTCTGTGCACAAGGGAGGTCTC Homo_sapiens TTCCAGACTTCAGTTAGCTCCTCATTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGCGGAAGGCATCCTGCCCTGACAATAATGCCTC Pan_troglodytes TTCCAGACTTCAGTTAGCTCCTCATTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGCGGAAGGCATCCTGCCCTGACAATAATGCCTC Pongo_abelii TTCTAGACTTCAGTTAGCCCCTCATTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGGGGAAGGCATCCTGCCCTGACAATAATGCCTC Papio_hamadryas TTCCAGACTTCAGTTAGCCCGTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGGGGAAGGCATCCTGCCCTGACAGTAATGCCGT Theropithecus_gelada TTCCAGACTTCAGTTAGCCCGTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGGGGAAGGCATCCTGCCCTGACAGTAATGCCGT Macaca_sylvanus TTCCAGACTTCAGTTAGCCCGTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGGGGAGGGCATCCTGCCCTGACACTAATGCCGT Chlorocebus_aethiops TTCCAGACTCCAGTTAGCCCCTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGGGGAAGGCATCCTGCYCTGACAATAATGCCGT Colobus_guereza TTCCAGACTTCAGTTAGCCCCTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTCTCTAGATGCGGGGGGAAGGCATCCTGCCCTGACAATAATGCCTT Piliocolobus_badius TTCCAGACTTCAGTTAGCCCCTCCTTCATCCAGAAACCCCGCCCATCCC-TCTCTCCCTAGATGCTGGGGAAAGGCATCCTGCCCTGACACTAATGCCGT Procolobus_verus TTCCAGACTTCAGTTAGCCCCTCCTTCATCCAGAAACCCAGTCCATCCCCTCTCTCCCTAGATGCCGGGGGCAGGCATCCTGCCCTGACACTAATGCCGT Presbytis_melalophos TTCCAGACTTCAGTTAGCCCCTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGGGGCAGGCATCCTGTCCTGACAATAATGCCGT Pygathrix_nemaeus TTCCAGACTTCAGTTAGCCCCTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGGGGCAGGCATCCTGCCCTGACAATAATGCCAT Nasalis_larvatus TTCCAGACTTCAGTTAGCCCCTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGGGGCAGGCATCCTGCCCTGACAATAATGCCGT Simias_concolor TTCCAGACTTCAGTTAGCCCCTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGGGGCAGGCATCCTGCCCTGACAATAATGCCGT Rhinopithecus_avunculus TTCCAGACTTCAGTTAGCCCCTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTTCCTAGATGCTGGGGGCAGGCATCCTGCCCTGACAATAATGCCGT Trachypithecus_obscurus TTCCAGACTTCAGTTAGCCCCTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGGGGCAGGCATCCTGCCCTGACAATAATGCCGT Semnopithecus_entellus TTCCAGACTTCAGGTAGCCCCTCCTTCATCCAGAAACCCAGCCCATCCCCTCTCTCCCTAGATGCTGGGGGCAGGCATCCTGCCCTGACAATAATGCCGT Homo_sapiens CTCAGGGCTGGCTCAGCTCCCCACCCAGTGGACGCATCCTGCTTGGGTCTAGCCTGTTGCCCCCATAACTAACCCTCTGATGTTTGGAGCTGGGGAT--- Pan_troglodytes CTCAGGGCTGGCTCAGCTCCCCACCCAGTGGACGCATCCTGCTTGGGTCTAGCCTGTTGCCCCCATAACTAACCCTCTGATGTTTGGAGCTGGGGAT--- Pongo_abelii CTCAGGGCTGGCTCAGCTCCCCACCCAGGGGAAGCATCCTCCTCGGGTCTAGCCTGTTGACCCCATAACTAACCCTCTGATGTTTGGAGCTGGAGAT--- Papio_hamadryas CTCAGGGCTGGCTCAGCTCCCCACTCAGGGGAAGCATCCTCCTTGGGTCTAGCCTTTTGCCCCCGTAACTAATCCTCTGATGTTTGGAGCTGGGGGT--- Theropithecus_gelada CTCAGGGCTGGCTCAGCTCCCCACTCAGGGGAAGCATCCTCCTTGGGTCTAGCCTTTTGCCCCCGTAACTAATCCTCTGATGTTTGGAGCTGGGGGT--- Macaca_sylvanus CTCAGGGCTGGCTCAGCTCCCCACTCAGGGGAAGCATCCTCCTTGGGTCTAGCCTTTTGCCCCCGTAACTAACCCTCTGATGTTTGGAGCTGGGGGT--- Chlorocebus_aethiops CTCAGGGCTGGCTCAGCTCCCCACTCAGGGGAAGCATCCTCCTTGGGTCTAGCCTTTTGCCCCCGTAACTAA---TCTGATGTTTGGAGCTGGGGGT--- Colobus_guereza CTCAGGGCTGGCTCAGCTCCCCACCCAGGGGAAGCAGCCTCCTCGGGTCTAGCCTTTTGCGCCCATAACTAACTCTCTGATGTTTGGAGCTGGGGGT--- Piliocolobus_badius CTCAGGGCTGGCTCAGCTTCCCACCCAGGGGAATCAGCCTCCTCGGGTCTAGCCTTTTGCCCCCATAACTAATCCTCTGATGTTTGGAGCTGGGGGT--- Procolobus_verus CTCAGGGCTGGCTCAGCTCCCCACCCAGGGGAAGCAGCCTCCTCGGGTCTAGCCTTTTGCCCCCATAACTAATCCTCTGATGTTTGGAGCTGGGGGT--- Presbytis_melalophos CTCAGGGCTGGCTCAGCTCCCCACCCAGGGGAAGCAGCCTCCTCGGGTCTAGCCTTTTGCGCCCATAACTAATCCTCTGATGTTTGGAGCTGGGGGT--- Pygathrix_nemaeus CTCAGGGCTGGCTCAGCTCCCCACCC-GGGGAAGCAGCCTCCTCGGGTCTAGCCTTTTGCGCCCATAACTGATCCTCTGATGTTTGGAGCTGGGGGT--- Nasalis_larvatus CTCAGGGCTGGCTCAGCTCCCCACCCAGGGGAAGCAGCCTCCTCGGGTCTAGCCTTTTGCGCCCATAACTGATCCTCTGATGTTTGGAGCTGGGGGT--- Simias_concolor CTCAGGGCTGGCTCAGCTCCCCACCCAGGGGAAGCAGCCTCCTCGGGTCTAGCCTTTTGCGCCCATAACTGATCCTCTGATGTTTGGAGCTGGGGGT--- Rhinopithecus_avunculus CTCAGGGCTGGCTCAGCTCCCCACCCAGGGGAAGCAGCGTCCTCGGGTCTAGCCTTTTGCGCCCATAACTAATCCTCTGATGTTTGGAGCTGGGGGT--- Trachypithecus_obscurus CTCAGGGCTGGCTCAGCTCCCCACCCAGGGGAAACAGCCTCCTCGGGTCTAGCCTTTTGCGCCCATAACTAATCCTCTGATGTTTGGAGCTGGGGGTGGC Semnopithecus_entellus TTCAGGGCTGGCTCAGCTCCCCACCCAGGGGAAGCAGCCTCCTCGGGTCTAGCCTTTTGCGCCCATAACTAATCCTCTGATGTTTGGAGCTGGGGGT--- Homo_sapiens ------GGCTGGGGTGGGGGCAAAGAGGGCTGGTCTTCTCTTCTGAACTCTGTGGTACATGTGTGGCTTCCTTTCTGTAGGGATGGAAGCAAAGAT-GAG Pan_troglodytes ------GGCTGGGGTGGGGGCAAAGAGGGCTGGTCTTCTGTTCTGAACTCTGTGGTACATGTGTGGCTTCCTTTCTGTAGGGATGGAAGCAAAGAT-GAG Pongo_abelii ------GGCTGGGGTGGGGGCAAAGAGGGCTGGTCTTGTGTTCTGAACTCTGTAGTACATGTGTGGCTTCCTTTCTGTAGGGATGGAAGCAAAGAT-GAG Papio_hamadryas ------GGCTGGGGTGGGGGCAAAGAGGGCCTGTCTTCTGCTCTGAACTCTATGGTACTTGCGTGGGTTCCTTTCTCTAGGGATGGAGGCCAAGAT-GAG Theropithecus_gelada ------GGCTGGGGTGGGGGCAAAGAGGGCCTGTCTTCTGCTCTGAACTCTATGGTACGTGCGTGGGTTCCTTTCTCTAGGGATGGAGGCCAAGAT-GAG Macaca_sylvanus ------GGCTGGGGTGGGGGCAAAGAGGGCCTGTCTTCTGCTCTGAACTCTATGGTACGTGCGTGGGTTCCTTTCTCTAGGTATGGAGGCCAAGAT-GAG Chlorocebus_aethiops ------GGCTGGGGTGGGGGCAAAGAGGGCCTGTCTTCTGCTCTGAACTCTATGGTACGTGCGTGGGTTCCTTTCTCTAGGGATGGAGGCCAAGAT-GAG Colobus_guereza ------GGCTGGGGTGGGGGCAAAGAGGGCCTGT-TTCTGCTCTGAACTCTATGGTACGTGCGTGGGTTCCTTTCTCTAGGGATGGAAGCCAAGATCGAG Piliocolobus_badius ------GGCTGGGGTGGGGGCAAAGAGGGCCTGTCTTTT---CTGAACTCTATGGTACGTGCGTGGGTTCCTTTCTCTAGGGATGGAAGCCAAGATCGAG Procolobus_verus ------GGCTGGGATGGGGGCAAAGAGGGCCTGTCTTTT---CTGAACTCTATGGTACGTGCGTGGGTTCCTTTCTCTAGGGATGGAAGCCAAGAT-GAG Presbytis_melalophos ------GGCTGGGGTGGGGGCAAAGAGGGCCTGTCTTTT---CTGAACTCTGTGGTACGTGCGTGGGTTCCTTTCTCTAGGGATGGAAGCCAAGAT-GAG Pygathrix_nemaeus ------GGCTGGGGTGGGGGCAAAGAGGGCCTGTTTTTT---CTGAACTCTATGGTACGTGCGTGGGTTCCTTTCTCTAGGGATGGAAGCCAAGAC-GAG Nasalis_larvatus ------GGCTGGGGTGGGGGCAAAGAGGGCCTGTCTTTT---CTGAACTCTATGGTACGTACGTG-GTTCCTTTCTCTAGGGATGGAAGCCAAGAC-GAG Simias_concolor ------GGCTGGGGTGGGGGCAAAGAGGGCCTGTCTTTT---CTGAACTCTATGGTACGTACGTGGGTTCCTTTCTCTAGGGATGGAAGCCAAGAC-GAG Rhinopithecus_avunculus ------GGCTGGGGTGGGGGCAAAGAGGGCCTGTCTTTT---CTGAACTCTATGGTACGTGCGTGGGTTCCTTTCTCTAGGGATGGAAGCCAAGAT-GAG Trachypithecus_obscurus TGGGGTGGCTGGGGTGGGGGCAAAGAGGGCCTGTCTTTT---CTGAACTCTATGGTACGTGCGTGGGTTCCTTTCTCTAGGGATGGAAGCCAAGAT-GAG Semnopithecus_entellus ------GGCTGGGGTGGGGGCAAAGAGGGCCTGTCTTTT---CTGAACTCTATGGTACGTGCGTGGGTTCCTTTCTCTAGGAATGGAAGCCAAGAT-GAG Homo_sapiens GACGAAGAGAATGCACAGGGCTTTCCTTGAGGATCAAAGTCTTTGATTCTCTTTGGAACAGTAGGTCCAAGGAACACGATGAAGCAGAGGCCCATGGTTC Pan_troglodytes GACGAAGAGAATGCACAGGGCTTTCCTTGAGGATCAAAGTCTTTGATTCTCTTTGGAACAGTAGGTCCAAGGAACACGATGAAGCAGAGGCCCATGGTTC Pongo_abelii GACGAAGAGAATGCACAGGGCTTTCCTTGAGGATCAAAGTCTCTGATTCTCTTTGGAACAGTAGGTCCAAGGAACACGATGAAGCAGAGGCCCATGGTTC Papio_hamadryas GACGAATAGAGTGCACAGGGCTTCCCCTGGGGGTAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCTGAGGAACACTGTGAAGCAGAGGCCCATGGTGG Theropithecus_gelada GACGAATAGAGTGCACAGGGCTTCCCCTGGGGATAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCCGAGGAACACTGTGAAGCAGAGGCCCGTGGTGG Macaca_sylvanus GACGAATAGAGTGCACAGGGCTTCCCCTGGGGATAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCCGAGGAACACTGTGAAGCAGAGGCCCATGGTTG Chlorocebus_aethiops GATGAATAGAGTGCACAGGGCTTCCCCTGAGGGTAAAAGTCRCTGATTCTCTTTGGAACAGTAGGTCYGAGGAACAC--TGAAGCAGAGGCCCATGGTTC Colobus_guereza GACGAATGGAGTGCACAGGGCTTCCCCTGAGGATAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCCAAGGAACACGATGAAGCAGAGGCCCATGGTTC Piliocolobus_badius GACGAATAGAGTGCCCAGGGCTTCCCCTGAGGATAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCCAAGGAACACGACGAAGCAGAGGCCCATGGTTC Procolobus_verus GACGAATAGAGTGCACGGGGCTTCCCCTGAGGATAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCTAAGGAACACGATGAAGCAGAGGCCCATGGTTC Presbytis_melalophos GACGAATAGAGTGCACAGGGCTTCCCTTGAGGATAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCCAAGGAACACGGTGAAGCAGAGGCCCGTGGTTG Pygathrix_nemaeus GACGAATAGCGTGCACAGGGCTTCCCTTGAGGATAAAAGTCCCTGATTCTTTTTGGAACAGTAGGTCCAAGGAACAC--TGAAGCAGAGGCCCGTGGTTG Nasalis_larvatus GACGAATAGAGTGCACAGGGCTTCCCTTGAGGATAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCCAAGGAACACTGTGAAGCAGAGGCCCGTGGTTG Simias_concolor GACGAATAGAGTGCACAGGGCTTCCCTTGAGGATAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCCAAGGAACACTGTGAAGCAGAGGCCCGTGGTTG Rhinopithecus_avunculus GACGAA-AGAGTACACAGGGCTTCCCTTGAGGATAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCCAAGGAACACTGTGAAGCAGAGGCCCGTGGTTG Trachypithecus_obscurus GACGAATAGAGTGCACAGGGCTTCCCTTGAGGATAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCCAAGGAACACGGTGAAGCAGAGGCCCATGGTTG Semnopithecus_entellus GACGAATAGAGTGCACAGGGCTTCCCTTGAGGATAAAAGTCCCTGATTCTCTTTGGAACAGTAGGTCCAAGGAACACGGTGAAGCAGAGGCCCGTGGTTG Homo_sapiens TTTATAAGAGACTGGGCCAGGCTGGGAGAAGGCGTGTGCAAGGATGCACTTAGCAAGCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTCACATGGAGT Pan_troglodytes TTTATAAGAGACTGGGCCAGGCTGGGGAAAGGCGTGTGCAAGGATGCACTTAGCAAGCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTCACATGGAGT Pongo_abelii TTTATAAGAGACTAGGCCAGGCTGGG-AAAGACACGTGCAAGGATGCACTTAGCAAGCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTCACATGGAGT Papio_hamadryas TTTAAGAAAGACCGGGCCAGGCTGGGAAAAGGTGCGAGTAACGATGCACTTAGC--GCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACATGGAGT Theropithecus_gelada TTTATGAAAGACTGGGCCAGGCTGGGAAAAGGTGCGAGTAACGATGCACTTAGC--GCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACATGGAGT Macaca_sylvanus TTTATGAAAGACCGGGCCAGGCTGGGAAAAGGTGTGAGTAAGGATGCACTTAGC--GCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACATGGAGT Chlorocebus_aethiops TTTATGAAAGACCGGGCCAGGCTGGGAAAAGGTGC-AGTAAGGATGCGCTTAGC--GCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACATGGAGT Colobus_guereza TTTATGAAAGACCGGGCTAGGCTGGGAAAAGGTGTGAGTAAGGATGTGCTTAGC--GCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACATGGAGT Piliocolobus_badius TTTATGAAAGACCGGGCCAGGCTGGGAAAAGGTGCGAGTAAGGATGTGCTTAGC--GCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACATGGAGT Procolobus_verus TTTATGAAAGACCGGGCCAGGCTGGGAAAAGGTGCGAGTAAGGATGTGTTTAGC--GCCTTCTTGCCGCACAACTCTAGGGGGCCCCATTTACATGGAGT Presbytis_melalophos TTTATGAAAGACCGGGCCAGGCTGGGAAAAGGTGCGAGTAAGGATGTGCTTAGC--GCCTTCTTGCTGCACAACTCTAGGG-GCCCCATTTACGTGGAGT Pygathrix_nemaeus TTGATGAAAGAC-GGGCCAGGCTGGGAAAAGGTGTGAGTAAGGATGTGCTTGGC--GCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACGTGGAGT Nasalis_larvatus TTGATGAAAGACCGGGCCAGGCTGGGAAAAGGTGCGAGTAAGGATGTGCTTGGC--GCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACGTGGAGT Simias_concolor TTGATGAAAGACCGGGCCAGGCTGGGAAAAGGTGCGAGTAAGGATGTGCTTGGC--GCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACGTGGAGT Rhinopithecus_avunculus TTTATGAAAGACCGGGCCAGGCTGGGAAAAGGTGTGAGTAAGGATGTGCTTAGC--ACCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACATGGAGT Trachypithecus_obscurus TTTATGAAAGACGGGGCCAGGCTGGGAAAAGGTGCGAGTAAGGATGTGCTTAGC--GCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACGTGGAGT Semnopithecus_entellus TTTATGAAAGACCGGGCCAGGCTGGGAAAAGGTGCGAGTAAGGATGTGCTTAGC--GCCTTCTTGCTGCACAACTCTAGGGGGCCCCATTTACGTGGAGT Homo_sapiens ATTCTGGGAGAATGGAGTTGTAGGTTATGAGAAGGCCAGAGGCTCTC--GGGTTGAGGCCTTTCTCTGATTAAGAGGGTCCTGGGCTGGGGAGCTGGATA Pan_troglodytes ATTCTGGGAGAATGGAGTTGTAGGTTATGAGAAGGCCAGAGGCTCTC--GGGTTGAGGCCTTTCTCTGATTAAGAGGGTCCTGGGCTGGGGAGCTGGATA Pongo_abelii ATTCTGGGAGAATGAAGTTGTAGGTTGTGAGAAGGCCAGAGGCTCTCTGGGGTTGGGGCCTTTCTCTGATTAAGAGGGTCCTGGGCTGGGGAGCTGGACA Papio_hamadryas ATTCTGGGAGAAGGGAGTTGTAGGCTGTGAGAAGGCCAGAGGCTCTCTGGGGTTGGGGCCTTTCTCTGATTAAGAGGGTCCTGGACTGGGGTGCTGGACA Theropithecus_gelada ATTCTGGGAGAAGGGAGTTGTAGGCTGTGAGAAGGCCAGAGGCTCTCTGGGGTTGGGGCCTTTCTGTGATTAAGAGGGTCCTGGACTGGGGTGCTGGACA Macaca_sylvanus ATTCTGGGAGAAGGGAGTTGTAGGCTGTGAGAAGGCCAGAGGCTCTCTGGGGTTGGGGCCTTTCTCTGATTAAGAGGGTCCTGGACTGGGGTGCTGGACA Chlorocebus_aethiops ATTCTGGGAGAAGGGAGTTGTAGGCTGTGAGAAGGCCRGGGGCTCTCTGGGCTTGGGGCCTTTCTCTGATTAAGAGRGTCCTGAGCTGGGGTGCTGGACA Colobus_guereza ATTCTGGGAGAATGGAGTTGTAGGCTGTGAGAAGGCCAGAGGCTCTCTGGGGTTGGGGCCTTTCTCTGATTAAGAGGGTCCTCAGCTGGGGTGCTGGA-A Piliocolobus_badius ATTCTGGGAGAATGCAGTTGTAGGCAGTGAGAAGGCCAGAGGCTCTCTGGGGTTGGGGCCTTTCTCTGATTAAGAGGGTCCTGGGCTGGGGTGCTGGA-A Procolobus_verus ATTCTGGGAGAATGGAGTTGTAGGCTGTGAGAAGGCCAGAGGCTCTCTGGGGTTGGGGCCTTTGTCTGATTAAGAGGGTCCTGAGCTGGGGTGCTGGA-A Presbytis_melalophos ATTCTGGGAGAATGCAGTTGTAGGCTGTGAGAAGGCCAGAGGCTCTCTGGGGTTGTGGCCTTTCTCTGATTAAGAGGGTCCTGGGCTGGGGTGCTGGACG Pygathrix_nemaeus ATTCTGGGAGAATGCAGTTGTAGGCTATGAGAAGGCCAGAGGCTCTCTGGGGTTGTGGCCTTTCTCTGATTAAGAGGGTCCTGGGCTGGGGTGCTGGACG Nasalis_larvatus ATTCTGGGAGAATGCAGTTGTAGGCTGTGAGAAGGCCAGAGGCTCTCTGGGGTTGTGG-CTTTCTCTGATTAAGAGGGTCCTGGGCTGGGGTGCTGGACG Simias_concolor ATTCTGGGAGAATGCAGTTGTAGGCTGTGAGAAGGCCAGAGGCTCTCTGGGGTTGTGGCCTTTCTCTGATTAAGAGGGTCCTGGGCTGGGGTGCTGGACG Rhinopithecus_avunculus ATTCTGGGAGAATGCAGTTGTAGGCTGTGAGAAGGCCAGAGGCTCTCTGGGGTTGTGGCCTTTCTCTGATTAAGAGGGTCCTGGGCTGGGGTGCTGGACG Trachypithecus_obscurus ATTCTGGGAGAATGCAGTTGTAGGCTGTGAGAAGGCCAGAGGCTCTCTGGGGTTGTGGCCTTTCTCTGATTAAGAGGGTCCTGGGCTGGGGTGCTGGACG Semnopithecus_entellus ATTCTGGGAGAATGCAGTTGTAGGCTGTGAGAAGGCCAGAGGCTCTTTGGGGTTGTGGCCTTTCTCTGATTAAGAGGGTCCTGGGCTGGGGTGCTGGACG Homo_sapiens GGCAGGGGGTGCAGCAAAGTCACCCTGTGTTCCCTCTTGGCAGTGTGCTGATGACCGCGACGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCCTGGC Pan_troglodytes GGCAGGGGGTGCAGCAAAGTCACCCTGTGTTCCCTCTTGGCAGTGTGCTGATGACCGCGACGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCGTGGC Pongo_abelii GGCAGGGGGTACAGCAAAGTCACCCTGTGTTCCCTCTTGGCAGTGTGCTGATGACCGCGATGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCCTGGC Papio_hamadryas GGCAGGGGGTGCAGCAAAGTCACC-CTTGTTCCTTCTCGGTAGTGTGCTGACGACCCTGATGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCCTGGC Theropithecus_gelada GGCAGGGGGTGCAGCAAAATCACC-CTTGTTCCTTCTCGGTAGTGTGCTGACGACCCTGATGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCCTGGC Macaca_sylvanus GGCAGGGGGTGCAGCAAAGTCACC-CTTGTTCCTTCTCGGTAGTGTGCTGACGACCCTGATGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCCTGGC Chlorocebus_aethiops GGCAGGGGGTGCAGCAAAGTCACC-CTTGTTCCTTCTCGGTAGTGTGCTGACGACCCCGATGCTGTGTGCACCCGCTCCGCCACCGTCCGGCTGCCTGGC Colobus_guereza GGCAGGGGGTGCAGCAAAGACACC-GTTGTTCCCTCTCGGCAGTGTGCTGACGACCCTGATGCTGTGTGCACCCGCTCCGTCGCCGTCCGGCTGCCTGGC Piliocolobus_badius GGCAGGGG-TGCAGCCGAGTCACC-CTTGTTCCCTCCCGGCAGTGTGCTGACGACCCCGATGCTGTGTGCACCCGCTCCGCCATCGTCCGGCTGCCTGGC Procolobus_verus GGCAGGGGGTGCAGCAAAGTCACC-GTTGTTCCCTC--GGCAGTGTGCTGACGACCCCGATGCTGTGTGCACCCGCTCCGTCGCCGTCCGGCTGCCTGGC Presbytis_melalophos GGCAGGGGGTGCAGCAAAGTCACC--TTGTTCCCTCTCGGCAGTGTGCTGATGACCCCGATGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTG-CTGGC Pygathrix_nemaeus GGCAGGGG-TGCAGCAAAGTCACC-CTTGTTCCCTCTCGGCAGTGTGCTGACGACCCCGATGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCCTGGC Nasalis_larvatus GGCAGGGGGTGCAGCAAAGTCAC--CTTGTTCCCTCTCGGCAGTGTGCTGACGACCCCGATGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCCTGGC Simias_concolor GGCAGGGGGTGCAGCAAAGTCACC-CTTGTTCCCTCTCGGCAGTGTGCTGATGACCCCGATGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCCTGGC Rhinopithecus_avunculus GGCGGGGGGTGCAGCAAAGTCACC-CTTGTTCCCTCTCGGCAGTGTGCTGACGACCCCGATGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCCTGGC Trachypithecus_obscurus GGCAGGGGGTGCAGCAAAGTCACC-CTTGTTCCCTCTCGGCAGTGTGCTGACGACCCCGATGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCCTGGC Semnopithecus_entellus GGCAGGGGGTGCAGCAAAGTCACC-CTTGTTCCCTCTCGGCAGTGTGCTGACGACCCCGATGCTGTGTGCACCCGCTCCGTCACCGTCCGGCTGCCTGGC Homo_sapiens CTGCACAACAGCCTTGTGAAACTGAAGCATGGGGCAGG Pan_troglodytes CTGCACAACAGCCTAGTGAAACTGAAGCATGGGGCAGG Pongo_abelii CTGCAGGACAGCCTTGTGAAACTGAAGCATGGGGGAGG Papio_hamadryas CTGCACAACAGCCTTGTGAAGCTGAAGCATGGGGGAGG Theropithecus_gelada CTGCACAACAGCCTTGTGAAGCTGAAGCATGGGGGAGG Macaca_sylvanus CTGCACAACAGCCTTGTGAAGCTGAAGCATGGGGGAGG Chlorocebus_aethiops CTGCACAACAGCCTTGTGAAGCTGAAGCATGGGGGAGG Colobus_guereza CTGCACAACAGCCTTGTGAAGCTGAAGCATGGGGGAGG Piliocolobus_badius CTGCACAACAGCCTTGTGAAGCTGAAGCATGGAGGAGG Procolobus_verus CTGCACAGTAGCCTTGTGAAGCTGAAGCACGGGGGAGG Presbytis_melalophos CTGCACAACAGCCTTGTGAAGCTGAAGCACGGGGGAGG Pygathrix_nemaeus CTGCACAACAGCCTTGTGAAGCTGAAGCATGGGGGAGG Nasalis_larvatus CTGCACCACAGCCTCGTGAAGATGAAGCATGGGGGAGG Simias_concolor CTGCACCACAGCCTCGTGAAGATGAAGCATGGGGGAGG Rhinopithecus_avunculus CTGCACCACAGCCTCGTGAAGATGAAGCATGGGGGAGG Trachypithecus_obscurus CTGCACCACAGCCTTGTGAAGCTGAAGCATGGGGGAGG Semnopithecus_entellus CTGCACAACAGCCTTGTGAAGCTGAAGCATGGGGGAGG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 938; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 938; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 938; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1299502241566; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8592042532327245360; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8270570622471885102; mqVersion 274; checksumv 0 2 2707383604 null getNumChars 938 numChars 938 getNumTaxa 17 numTaxa 17 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 334267.0 sumSquares -4.6116860184273101E18 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 512; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1440 782; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8270570622471885102 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 200; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 928 715; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;