NEXUS
[File created by TreeBASE:  7/26/07  21:04:19]
[Matrix accession#: M1770]

BEGIN TAXA;
	TITLE M1770;
	DIMENSIONS  NTAX=13;
	TAXLABELS
		Reticulitermes_flavipes_Rw	Reticulitermes_flavipes_Sm	Reticulitermes_flavipes	Reticulitermes_flavipes_Hh	Reticulitermes_arenincola_Sd	Reticulitermes_flavipes_Rh	Reticulitermes_flavipes_Wl	Reticulitermes_tibialis_Ag	Reticulitermes_tibialis_Fs	Reticulitermes_hageni	Reticulitermes_virginicus_Jp	Reticulitermes_virginicus	Coptotermes_formosanus
	;
END;

BEGIN CHARACTERS;
	TITLE M1770;
	DIMENSIONS NCHAR=447;
	FORMAT DATATYPE = DNA MISSING = N GAP = -  ;
	MATRIX
		Reticulitermes_flavipes_Rw         TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATCAAACCAAATATAGGAACAAGAAAATTATATGACCCTAAAAAGATAATCAATAAACGGCGATATACAAACCAAT-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Reticulitermes_flavipes_Sm         TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATCAAACCAAATATAGGAACAAGAAAATTATATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Reticulitermes_flavipes            TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATATAGGAACAAGAAAATTACATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAAAATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Reticulitermes_flavipes_Hh         TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATATAGGAACAAGAAAATTACATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAAAATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Reticulitermes_arenincola_Sd       TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATAAAACCAAATATAGGAACAAGAAAATTACATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAC-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Reticulitermes_flavipes_Rh         TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATAAAACCAAATATAGGAACAAGAAAATTACATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAC-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Reticulitermes_flavipes_Wl         TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATAAAACCAAATATAGGAACAAGAAAATTAAATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAC-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Reticulitermes_tibialis_Ag         TACTATGTTACGACTTATCTCATTAACAAAT-AAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAACATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAA-CAACAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATAAAGGAACAAGAAAATTATATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACTAAGTAAGGTCCAACGCGGACTATCGATAACGAGACAGGTTCCTCTGAGCGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Reticulitermes_tibialis_Fs         TACTATGTTACGACTTATCTCATTAACAAAT-AAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAACATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAA-CAACAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATAAAGGAACAAGAAAATTATATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACTAAGTAAGGTCCAACGCGGACTATCGATAACGAGACAGGTTCCTCTGAGCGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Reticulitermes_hageni              TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATACCTCAGAACCAATTATCATAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAACCACCAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATCAAACCAAATAGAGGAACAAGAAAATTATATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAATAAAACAACTAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAGTACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Reticulitermes_virginicus_Jp       TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGCCGATGTGTACATACCTCAGAACCAATTATCATAAAAACAATCTTCAAAACATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAACCCAACAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATAAAGGAACAAGAAAATTATATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAATTAAACAACTAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Reticulitermes_virginicus          TACTATGTTACGACTTATCTCATTAACAAGTAAAACGAGAGCGACGGGCGATGTGTACATACCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAA-CCAACAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATAAAGGAACAAGAAAATTGTATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAATTAAACAACTAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
		Coptotermes_formosanus             TACTATGTTACGACTTATCTCATTAACAA--CAAACGAGAGCGACGGGCGATGTGTACATATCTTAGAACCCA-TATCACGAAAACAATCTACAAGACATTACAATCAAATCCAATTTCATACTAATAA-TCCAACCAATAATCCAAAC--AACAAAGAACAATGTAATCCATCAATAACACTTAGAAACAAGCTGCACCTTGACCTGAAATAAATCAAAATAAAGAAACCAGAAAATTAATAAACCCTAAAAGCATAATCAATAAACGGCGGTATACAAACCA---TAGCAACTAAGTAAGGTCCAACGCGGACTATCGATAACGAGACAGATTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATACCTAATACTACTCAAGCAAAAAAATTAACATTCTAAAATAATAGGGTATCTAATCCTAGTTT
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 447 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;