NEXUS
[File created by TreeBASE:  7/26/07  21:04:19]
[Matrix accession#: M1768]

BEGIN TAXA;
	TITLE M1768;
	DIMENSIONS  NTAX=31;
	TAXLABELS
		Reticulitermes_tibialis_Ag	Reticulitermes_tibialis_Fs	Reticulitermes_arenincola_Sd	Reticulitermes_flavipes_AF107484	Reticulitermes_flavipes_Wl	Reticulitermes_santonensis_AF262607	Reticulitermes_santonensis_AF291742	Reticulitermes_santonensis_AF291743	Reticulitermes_santonensis_AY027474	Reticulitermes_santonensis_AY027475	Reticulitermes_santonensis_AY027476	Reticulitermes_santonensis_AY027473	Reticulitermes_flavipes_AF525321	Reticulitermes_flavipes_AF525322	Reticulitermes_flavipes_AF525326	Reticulitermes_flavipes_AF107481	Reticulitermes_flavipes_AF525324	Reticulitermes_flavipes_AF525323	Reticulitermes_flavipes_Sm	Reticulitermes_santonensis_AF525343	Reticulitermes_hesperus_AF525329_CA	Reticulitermes_hageni	Reticulitermes_flavipes_AF107489	Reticulitermes_flavipes_AY027477	Reticulitermes_flavipes_AF107479	Reticulitermes_flavipes	Reticulitermes_flavipes_AF107480	Reticulitermes_flavipes_AF107482	Reticulitermes_virginicus	Reticulitermes_flavipes_AF525325	Coptotermes_formosanus
	;
END;

BEGIN CHARACTERS;
	TITLE M1768;
	DIMENSIONS NCHAR=228;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = -  ;
	MATRIX
		Reticulitermes_tibialis_Ag                MTTWLNMSLQDGASPIMEQMIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPAMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQMSTFRLLDTDNRIVLPMNSPIRMVVTAADVLHSWTIPSLGVKTDATPGRLNQTSFSINHPGVLYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_tibialis_Fs                MTTWLNMSLQDGASPIMEQMIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPAMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQMSTFRLLDTDNRIVLPMNSPIRMVVTAADVLHSWTIPSLGVKTDATPGRLNQTSFSINHPGVLYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_arenincola_Sd              MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF107484          MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_Wl                MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_santonensis_AF262607       MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_santonensis_AF291742       MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_santonensis_AF291743       MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_santonensis_AY027474       MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_santonensis_AY027475       MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_santonensis_AY027476       MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_santonensis_AY027473       MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILAFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF525321          MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASAFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF525322          MTTWLNMTLQDGASPIMEHLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF525326          MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQESTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF107481          MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSFEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF525324          MTTWLNMTLFDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF525323          MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTATNVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_Sm                MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILSGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_santonensis_AF525343       MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINTPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_hesperus_AF525329_CA       MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQPSTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQTSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_hageni                     MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQTSTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQSSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF107489          MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQASSSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AY027477          MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQASSSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF107479          MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQASFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes                   MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQASFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF107480          MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQASFSINHPGILYGQCSEICGANHSFSPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF107482          MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFLLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSCEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_virginicus                 MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTALPWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQTSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Reticulitermes_flavipes_AF525325          MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKGVGHQWYWSYEGSDFTKLEFASYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYEQCSEICGANHSFMPITIESVSANHFINWVSSLSE
		Coptotermes_formosanus                    MTTWLNMSLQDGASPIMEQLVFFHDHVLMIMLMITTTVSYMMVTLIRNKQTSRFMLEGQMIETTWTIAPAIILVFIAMPSLRLLYLMDEVHNPTLTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEEQQESTFRLLDTDNRIVLPINSPIRLIVTAADVLHSWTIPSLGVKTDATPGRLNQTSFSISRPGILYGQCSEICGANHSFMPITIESVPAKYFINWVSKLSE
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;