NEXUS
[File created by TreeBASE:  7/26/07  21:04:19]
[Matrix accession#: M1771]

BEGIN TAXA;
	TITLE M1771;
	DIMENSIONS  NTAX=11;
	TAXLABELS
		Reticulitermes_arenincola_Sd	Reticulitermes_flavipes_Wl	Reticulitermes_santonensis_AF292025	Reticulitermes_flavipes_Sm	Reticulitermes_santonensis_AF292026	Reticulitermes_flavipes	Reticulitermes_tibialis_Ag	Reticulitermes_tibialis_Fs	Reticulitermes_hageni	Reticulitermes_virginicus	Coptotermes_formosanus
	;
END;

BEGIN CHARACTERS;
	TITLE M1771;
	DIMENSIONS NCHAR=459;
	FORMAT DATATYPE = DNA MISSING = N GAP = -  ;
	MATRIX
		Reticulitermes_arenincola_Sd              CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCAT-AA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
		Reticulitermes_flavipes_Wl                CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCAT-AA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
		Reticulitermes_santonensis_AF292025       CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCAT-AA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
		Reticulitermes_flavipes_Sm                CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCGTGAA---TAAATGTTAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
		Reticulitermes_santonensis_AF292026       CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCGTGAA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
		Reticulitermes_flavipes                   cttaatccaacatcgaggtcgcaaacccccctgccgataagaactctcaagggagataACGCTGTTATCCCTAAGGTAATTTATTCTTACAATCAAAATAAATGGGATAAGCAAATATAAATAAATATAACAACATAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCAT-AA---TAAATGTAAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
		Reticulitermes_tibialis_Ag                CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGGGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATTAATGGATCAAGTAAATATAAATAAATATAACAACCTAAAGGAGGGGTTAAA-TAAATCCCTCCCATCACCCCAACAAAACATACTAAAC-GGCCTAGTGAACCCTCACAAACAGAAAAG-GACCATAA---TAAATGTTAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-TCAAAGTCAGTGGGCAGGCCATACTTCAAAAACTAA
		Reticulitermes_tibialis_Fs                CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGGGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATTAATGGATCAAGTAAATATAAATAAATATAACAACCTAAAGGAGGGGTTAAA-TAAATCCCTCCCATCACCCCAACAAAACATACTAAAC-GGCCTAGTGAACCCTCACAAACAGAAAAG-GACCATAA---TAAATGTTAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-TCAAAGTCAGTGGGCAGGCCATACTTCAAAAACTAA
		Reticulitermes_hageni                     CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAACAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATTATATCCCTCCCATCACCCCAACAAAACATACTAAAT-GGCCCAGTGAAACCTCACAAAC-GAAAAGAGACCAT-A---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-TCAAAGTCAGCGGGCAGGCCATACTTCAAAAACTAA
		Reticulitermes_virginicus                 CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAACAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATTATATCCCTCCCATCACCCCAACAAAACATATTAAAC-GGCCCAGTGAACCCTCACAAACAGAAAGTAGACCATAA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-CTAAAGTCAGCGGGCAGGCCATACTTCAAAAACTAA
		Coptotermes_formosanus                    CTTAATCCAACATCGAGGTCGCAAACCTCCCTGCCGATAAGAACTCTCAAGGAAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTATAATCAAAATAAATGGATCAAATAAATATAAATCAATATAACCAAAATCAAGAGGAGTT-AATTATATTCCTCCCATCACCCCAACAAAACAAAAAGTCCACTCACCAATAAAACAAACAAACAACAAACAAACAAATAAACCAAATGTTAAACTCTATAGGGTCTTCTCGTCCCACAAAAACATCTAAGAATTTTAACTCAAAAACCAAATTCAATAAAACATTCAACATTAAGACAGCTTGTGCCTCGTCAAGCCATTCATTCCAGATCACAATTAAAGAACTAATGATTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACACTCAA-GTCAGCGGGCAGGCCATACTTCAAAAACTAA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 459 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;