#NEXUS [written Sat Apr 09 12:31:16 CDT 2011 by Mesquite version 2.72 (build 527) at Kopila-HP/192.168.0.100] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=21; TAXLABELS Morus_nigra Morus_microphylla Morus_insignis Morus_rubra Morus_notabilis Morus_australis Morus_mongolica Morus_alba Morus_macroura Morus_celtidifolia Morus_cathayana Trophis_racemosa Trophis_involucrata Morus_mesozygia Morus_serrata Bagassa_guianensis Streblus_pendulinus Sorocea_affinis Sorocea_pileata Sorocea_muriculata Artocarpus_heterophyllus ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=981; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Morus_nigra CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAA-GGATGAAGAATAAAACTC------TATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTTATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_microphylla CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAA-GGATGAAGAATAAACCTTTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACATAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_insignis CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATCGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAGGAATCACTCC-AGAAA-GGATGAAGAATAAAACTCTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACATAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATATTCAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACC----TGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCGATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_rubra CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAA-GGATGAAGAATAAACCTTTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_notabilis CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAA-GGATGAAGAATAAAACTC------TATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTTATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAGGTGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_australis CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCCCAGAAA-GGATGAAGAATAAAACTC------TATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTACGTCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTTATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_mongolica CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAA-GGATGAAGAATAAAACTC------TATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTACGTCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTTATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_alba CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAA-GGATGAAGAATAAAACTC------TATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTTATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_macroura CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAA-GGATGAAGAATAAAACTC------TATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTTATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_celtidifolia CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTTAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAA-GGATGAAGAATAAACCTTTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACATAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_cathayana CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAA-GGATGAAGAATAAAACTC------TATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTTATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Trophis_racemosa CTTGGTATGGAA-CCTACCAAGCGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAA-GGATGAAGAATAAAACTCTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTCATTTTTATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAACCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATATTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTT-------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCC-TTT-CGTCTTTTTAATTGACATAAACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Trophis_involucrata CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATAAAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAA-GGATGAAGAATAAAACTCTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT-------AAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCC-TTT-CGTCTTTTTAATTGACATAAACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_mesozygia CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAGGAATCACTCC-AGAAA-GAATGAAGAATAAAACTCTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGATGGATTGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTTCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAAAAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTT-------GAAG-TCCAAGAAATTCCACCAGGACC----TGGATAAGACTTTCCAATCCTCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGGTGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Morus_serrata CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAAGAATCACTCC-AGAAAAGGATGAAGAATAAAACTC------TATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTTATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Bagassa_guianensis CTTGGTATGGAAACCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAGTGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAACAAAACAAACAAGGGTTCAGAAAGCGATAATAAAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAGGAATCACTCC-AGAAA-GGATGAAGAATAAAACTCTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACAAAAATCCGTATTTCTTTTAGTTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAATAATCAAATATTCATTGATCAAATC---------CATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATTTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGAGAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATATTAAATTTGAATAATTAATAATTCATTTTATTACTCGTATTGTACTGAAACTTACAAAGTCTTTTTTTTT------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTGGTAGAGCAGAGG Streblus_pendulinus ????????GGAAACCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAACGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACGGGGGTTCAGAAAGCGATAATAAAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAGGAATCACTCC-AGAAA-GGATGAAGAATAAAACTCTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTCATTTTCATGAAAAATAAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATTTTTTGAAGAATTGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCG-CAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTTTTTTTTTGAAGATCCAAGAAATTCCACCAGGACC----TGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGGATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTGGTAGAGCAAAGG Sorocea_affinis CTTGGTATGGAA-CCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATAAAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAGGAATCACTCC-AGAAA-AGATGAAGAATAAAACTCTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTT-------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCACACTTTTCGTCTTTTTAATTGACATAGAACCAAGTCCTCTATTAAAATGAGAATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTG-TAGAGCAGAGG Sorocea_pileata CTTGGTAAGGAAACCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATAAAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAGGAATCACTCC-AGAAA-AGATGAAGAATAAAACTCTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTT-------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGAATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTGGTAGAGCAGAGG Sorocea_muriculata CTTGGTATGGAAACCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATAAAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATCGAGTTGGCTGCAGTGCGTTAGTAAAGGAATCACTCC-AGAAA-GGATGAAGAATAAAACTCTATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATGAAAAATGAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCAGTTAC-TCCATCAAAATCTGATAGATCTTTTGAAGAATTGATTAATTGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATAGACAACAAT--------------------GAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCTTCTCATTTCGTTAGCGGTTCAAAATTCGTTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAGTTTTTTTCTTATCACAAGCCTTGTGATATAGATGAAACACGTACAAATGAGCATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTTT-------GAAGATCCAAGAAATTCCACCAGGACCTGGCTGGATAAGACTTTCCAATCCCCCTTT-CGTCTTTTTAATTGACATAGACCCAAGTCCTCTATTAAAATGAGAATGGTGCGTGAGGAATGGTCGGGATAGCTCAGCTGGTAGAGCAGAGG Artocarpus_heterophyllus CTTGGTATGGAAACCTACCAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGTAATCCTGAGCCAAATCCGGTTTTCTGAAAAC-----AAACAAGGGTTCAGAAAGCGATAATAAAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAGTTGGCTGCAGTGCATTAGTAAAGGAATCACTTC-AGAAA-GGATGAAGAATAAACGTATATACGTATACGTACTGAAATACTATCTTCAAATGATTAATGACAACACAAATCCGTATTTCTTTTAATTTTCATTAAAAATTAAAGAATTGTTGTGAATCAATTATAAGTTGAAAAAAGAATCAAATATTCATTGATCAAATCATTTAC-TCCATCAAAACCTGATAGATCTTTTGAAGAATTGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATCGACAACAATATGTCAATATCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAGGTCCATCTGATTCCCTAATTATTTATCCTACCCTCTCATTTCGTTAGCGGTTCAAAATTCGCTATCTTTCTCGTTCATTCTAATTCTACAAACGTATCTGAGCGAAAATTTTTTTCTTATCACAAGCCTTGTGATAGAGGTGAAACACGTACAAATGAACATCTTTGAGAAAGGAATCCCAATGTTAAATTTGAATAATTAATAATTCATTTTATTACTCGTACTGTACTGAAACTTACAAAGTCTTTTTTT--------GAAGATCCAAGAAATTCCACCAGGGCT----TGGATAAGACTTTCCAACTCCCCTTT-CGTCTTTTTAATTGACATAGGCCCAAGTCCTCTATTAAAATGAGAATGATGCGTAAGGAATGGTCGGGATAGCTCAGCTGGTAGAGCAGAGG ; END; BEGIN TREES; Title 'Trees from "trnL-trnF.nxs"'; LINK Taxa = Taxa; TRANSLATE 1 Morus_nigra, 2 Morus_microphylla, 3 Morus_insignis, 4 Morus_rubra, 5 Morus_notabilis, 6 Morus_australis, 7 Morus_mongolica, 8 Morus_alba, 9 Morus_macroura, 10 Morus_celtidifolia, 11 Morus_cathayana, 12 Trophis_racemosa, 13 Trophis_involucrata, 14 Morus_mesozygia, 15 Morus_serrata, 16 Bagassa_guianensis, 17 Streblus_pendulinus, 18 Sorocea_affinis, 19 Sorocea_pileata, 20 Sorocea_muriculata, 21 Artocarpus_heterophyllus; TREE Fig._1_right = (((((1,5,(6,7),8,9,11,15),((2,10),4),(12,13)),16,(18,19),20),3,14,17),21); TREE Fig._1_right = (((((1,5,(6,7),8,9,11,15),((2,10),4),(12,13)),16,(18,19),20),3,14,17),21); TREE Fig._1_right = (((((1,5,(6,7),8,9,11,15),((2,10),4),(12,13)),16,(18,19),20),3,14,17),21); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 981; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 981; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 981; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1302370276371; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 425513013401113496; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1726610108152116146; checksumv 0 2 3246942895 null numChars 981 short true bits 15 states 15 sumSquaresStatesOnly 454985.0 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 233; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 726 689; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 493 622; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #425513013401113496 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 806.1302261146087.6870619245566868327; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 493 622; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 3; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1726610108152116146 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 493 622; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;