NEXUS [File created by TreeBASE: 7/26/07 21:04:27] [Analysis accession#: S1048A3037] BEGIN TREES; TITLE S1048A3037; TRANSLATE 1 'Sugarcane yellows phytoplasma type I strain ScYP I-Barb AF056094', 2 'Sugarcane yellows phytoplasma type I strain ScYP I-Afr AF056095', 3 'Loofah witches-broom phytoplasma str. LfWB clone1 rrnB AF353090', 4 Mollicutes_sp._ass._with_papaya_yellows_crinkle_disease_Y10097, 5 'Black raspberry witches-broom phytoplasma clone BRWB7 AF302841', 6 Mycoplasma_MLO_FD_transm._from_V.vinifera_to_V.faba_X76560, 7 'Sweet potato witches-broom mycoplasma-like organism L33770', 8 'Almond witches-broom phytoplasma strain AlmWB-P1 AF455040', 9 'Almond witches-broom phytoplasma strain AlmWB-N1 AF455041', 10 Aster_yellows_phytoplasma_strain_AY1_clone_14_A_AF322644, 11 'Almond witches- broom phytoplasma strain AlmWB1 AF390136', 12 'Almond witches- broom phytoplasma strain AlmWB2 AF390137', 13 'Clover proliferation phytoplasma strain EY-IL 2 AF409069', 14 'Clover proliferation phytoplasma strain EY-IL 1 AF409070', 15 'Pigeon pea witches-broom mycoplasma-like organism L33735', 16 Chayote_witches_broom_phytoplasma_ChWBIII_Ch10_AF147706, 17 Chayote_witches_broom_phytoplasma_ChWBIII_Mor5_AF147707, 18 Carludovica_palmata_leaf_yellowing_phytoplasma_AF237615, 19 'Almond witches-broom phytoplasma strain AlmWB3 AF455038', 20 'Almond witches-broom phytoplasma strain AlmWB4 AF455039', 21 'Mycoplasma-like organism Italian clover phyllody X77482', 22 Sweet_potato_little_leaf_phytoplasma_strain_V4_AJ289193, 23 Virginia_grapevine_yellows_phytoplasma_VGYIII_AF060875, 24 Aster_yellows_phytoplasma_strain_AY1_clone_10_AF322645, 25 Mollicutes_sp._ass._with_papaya_mosaic_disease_Y10096, 26 'Chinese pigeon pea witches-broom phytoplasma AF028813', 27 Aster_yellows_phytoplasma_A_isolate_98UW166A_AF268404, 28 Aster_yellows_phytoplasma_O_isolate_98UW166B_AF268405, 29 Rehmannia_glutinosa_var_purpurea_phytoplasma_AF335107, 30 Ethiopian_Gliricidia_little_leaf_phytoplasma_AF361018, 31 Clover_phyllody_phytoplasma_strain_CPh_rrnA_AF222065, 32 Clover_phyllody_phytoplasma_strain_CPh_rrnB_AF222066, 33 Aster_yellows_phytoplasma_A_isolate_98UW159_AF268403, 34 Aster_yellows_phytoplasma_A_isolate_99UW111_AF268408, 35 Aster_yellows_phytoplasma_B_isolate_99UW108_AF268409, 36 Honduran_Gliricidia_little_leaf_phytoplasma_AF361017, 37 Sorghum_grassy_shoot_phytoplasma_variant_II_AF509325, 38 'Loofah witches-broom mycoplasma-like organism L33764', 39 'Peanut witches-broom mycoplasma-like organism L33765', 40 Aster_yellows_phytoplasma_A_isolate_99UW93_AF268406, 41 Aster_yellows_phytoplasma_B_isolate_99UW89_AF268407, 42 Florida_Rhynchosia_little_leaf_phytoplasma_AF361019, 43 Chinaberry_yellows_phytoplasma_strain_CbY1_AF495882, 44 Sorghum_grassy_shoot_phytoplasma_variant_I_AF509324, 45 Mexican_periwinkle_virescence_phytoplasma_AF248960, 46 'Ziziphus jujube witches-broom phytoplasma AF305240', 47 'Ziziphus jujube witches-broom phytoplasma AY072722', 48 'Clover yellow edge mycoplasma-like organism L33766', 49 'Mycoplasma-like organism plum leptonecrosis X77372', 50 'Cactus phytoplasma Martinez-Soriano 1999 AF200718', 51 'Cactus phytoplasma Martinez-Soriano 2001 AF356846', 52 European_stone_fruit_yellows_phytoplasma_AY029540, 53 Yucatan_coconut_lethal_decline_phytoplasma_U18753, 54 'Canadian peach X mycoplasma-like organism L33733', 55 'Phytoplasma sp pathovar mosaic-inducing AF320575', 56 'Elm yellows mycoplasma-like organism rDNA L33763', 57 'Italian alfalfa witches-broom phytoplasma Y16390', 58 Knautia_arvensis_phyllody_phytoplasma_23S_Y18052, 59 'Poinsettia branch-inducing phytoplasma AF190223', 60 'Black locust witches-broom phytoplasma AF244363', 61 'Clover phyllody mycoplasma-like organism L33762', 62 Cocky_apple_witches_broom_phytoplasma_AJ295330, 63 Candidatus_Phytoplasma_allocasuarinii_AY135523, 64 Fragaria_multicipita_phytoplasma_rrnA_AF190224, 65 Fragaria_multicipita_phytoplasma_rrnB_AF190225, 66 Walnut_witches_broom_phytoplasma_rrnA_AF190226, 67 Walnut_witches_broom_phytoplasma_rrnB_AF190227, 68 'Mycoplasma-like organism substrain ACLR X68338', 69 'Mycoplasma-like organism substrain ASHY X68339', 70 'Mycoplasma-like organism substrain PPER X68374', 71 'Caribbean PPWB mycoplasma-like organism U18763', 72 Phytoplasma_sp_Tomato_Big_Bud_Australia_Y08173, 73 Strawberry_lethal_yellows_phytoplasma_AJ243045, 74 'Tomato big bug mycoplasma-like organism L33760', 75 Ash_yellows_phytoplasma_strain_AshY3_AF105315, 76 Ash_yellows_phytoplasma_strain_AshY5_AF105316, 77 'Pigeon pea witches-broom phytoplasma AF248957', 78 Bermuda_grass_white_leaf_phytoplasma_AF248961, 79 Bermuda_grass_white_leaf_phytoplasma_AJ550985, 80 Bermuda_grass_white_leaf_phytoplasma_AJ550986, 81 'Aster yellows mycoplasma-like organism L33767', 82 'Mycoplasma-like organism substrain AAY X68373', 83 'Mycoplasma-like organism substrain ULW X68376', 84 Stylosanthes_little_leaf_phytoplasma_AJ289192, 85 Candidatus_Phytoplasma_cocostanzaniae_X80117, 86 Ash_yellows_phytoplasma_strain_LWB3_AF105317, 87 Elm_yellows_phytoplasma_strain_WVEY_AF122911, 88 Soybean_veinal_necrosis_phytoplasma_AF177383, 89 'Paulownia witches-broom phytoplasma AF279271', 90 Cirsium_white_leaf_phytoplasma_rrnA_AF373105, 91 Cirsium_white_leaf_phytoplasma_rrnB_AF373106, 92 'Mycoplasma-like organism substrain AT X68375', 93 Phormium_yellow_leaf_phytoplasma_rrnA_U43569, 94 Phormium_yellow_leaf_phytoplasma_rrnB_U43570, 95 Bermuda_grass_white_leaf_phytoplasma_Y16388, 96 Candidatus_Phytoplasma_aurantifolia_MO15442, 97 Candidatus_Phytoplasma_cocosnigeriae_Y14175, 98 Candidatus_Phytoplasma_brasiliense_AF147708, 99 Periwinkle_little_leaf_phytoplasma_AF228053, 100 Strawberry_leafy_fruit_phytoplasma_AF274876, 101 Delion_virescence_phytoplasma_rrnA_AF370119, 102 Delion_virescence_phytoplasma_rrnB_AF370120, 103 'Ash yellows mycoplasma-like organism L33759', 104 Picris_echioides_yellows_phytoplasma_Y16389, 105 Picris_echiodes_phyllody_phytoplasma_Y16393, 106 Pigeon_pea_little_leaf_phytoplasma_AJ289191, 107 Strawberry_green_petal_phytoplasma_AJ243044, 108 Mollicutes_from_C.anuum_to_C.roseus_X76427, 109 Candidatus_Phytoplasma_phoenicium_AF515636, 110 Candidatus_Phytoplasma_australiense_L76865, 111 Candidatus_Phytoplasma_cynodontis_AJ550984, 112 Florida_Panus_decline_phytoplasma_AF361020, 113 Candidatus_Phytoplasma_phoenicium_AF515637, 114 Candidatus_Phytoplasma_japonicum_AB010425, 115 Candidatus_Phytoplasma_castaneae_AB054986, 116 Fragaria_multicipita_phytoplasma_AF036354, 117 'Loofah witches-broom phytoplasma AF248956', 118 Carrot_proliferation_phytoplasma_AF291682, 119 'Cactus witches-broom phytoplasma AF331973', 120 Alfalfa_witches_broom_from_Oman_AF438413, 121 Candidatus_Phytoplasma_prunorum_AJ542544, 122 Brinjal_little_leaf_phytoplasma_AF228052, 123 Apple_proliferation_phytoplasma_AF248958, 124 Peach_yellow_leafroll_phytoplasma_Y16394, 125 Candidatus_Phytoplasma_fraxini_AF092209, 126 Candidatus_Phytoplasma_ziziphi_AF279272, 127 Clover_yellow_edge_phytoplasma_AF173558, 128 Clover_yellow_edge_phytoplasma_AF175304, 129 Clover_yellow_edge_phytoplasma_AF189288, 130 Texas_Phoenix_palm_phytoplasma_AF434989, 131 Chinaberry_yellows_phytoplasma_AF495657, 132 Cynodon_white_leaf_phytoplasma_AF509321, 133 Vigna_little_leaf_phytoplasma_AJ289195, 134 Mollicutes_sp._from_S.melongena_X83431, 135 Candidatus_Phytoplasma_trifolii_CPDRRE, 136 Candidatus_Phytoplasma_luffae_AF086621, 137 Candidatus_Phytoplasma_solani_AF248959, 138 Potato_purple_top_phytoplasma_AF217247, 139 Candidatus_Phytoplasma_asteris_M30790, 140 Candidatus_Phytoplasma_palmae_MO18747, 141 Candidatus_Phytoplasma_vitis_AF176319, 142 Candidatus_Phytoplasma_spartii_X92869, 143 Virginia_creeper_phytoplasma_AF305198, 144 Mollicutes_from_S.officinarum_X76432, 145 Candidatus_Phytoplasma_ulmi_AF122910, 146 Candidatus_Phytoplasma_mali_AJ542541, 147 Candidatus_Phytoplasma_pyri_AJ542543, 148 Candidatus_Phytoplasma_rhamni_X76431, 149 Candidatus_Phytoplasma_oryzae_D12581, 150 Cirsium_yellows_phytoplasma_AF200431, 151 Aster_yellows_phytoplasma_B_AF503568, 152 Candidatus_Phytoplasma_pruni_L04682, 153 Tomato_big_bud_phytoplasma_AF222064, 154 Mulberry_dwarf_phytoplasma_AY075038, 155 Bindweed_yellows_phytoplasma_Y16391, 156 Mollicutes_from_V.myrtillus_X76430, 157 Phytoplasma_sp._strain_GaLL_Y15865, 158 Alfalfa_stunt_phytoplasma_AF177384, 159 Spiraea_stunt_phytoplasma_AF190228, 160 Aster_yellows_phytoplasma_AF222063, 161 Peach_rosette_phytoplasma_AF236121, 162 Aster_yellows_phytoplasma_AF245439, 163 Alder_yellows_phytoplasma_AY028789, 164 Mollicutes_from_V.Vinifera_X76428, 165 Mollicutes_sp._from_V.faba_X83432, 166 Mollicutes_from_R.frangula_X76431, 167 Little_peach_phytoplasma_AF236122, 168 Phytoplasma_sp_strain_StLL_Y17055, 169 Elm_yellows_phytoplasma_AF189214, 170 Ash_yellows_phytoplasma_AF189215, 171 Alder_yellows_phytoplasma_Y16387, 172 Phytoplasma_sp_strain_LDG_Y13912, 173 Mollicutes_from_C.roseus_X76429, 174 Mollicutes_from_C.juncea_X76433, 175 Red_suture_phytoplasma_AF236123, 176 Pear_decline_phytoplasma_Y16392, 177 Rubus_stunt_phytoplasma_Y16395, 178 Phytoplasma_sp_STRAWB1_U96614, 179 Phytoplasma_sp_STRAWB2_U96616, 180 Phytoplasma_sp_PinP_AJ310849, 181 Phytoplasma_sp_Gph_AB026155, 182 Phytoplasma_sp_PY1_AF453328, 183 Group_II_phytoplasma_D12580, 184 Group_I_phytoplasma_D12569, 185 'Mycoplasma-like sp. M86340', 186 Phytoplasma_HD1_AF122912, 187 Phytoplasma_sp._Y11933, 188 Phytoplasma_sp._X92869, 189 Phytoplasma_sp_U89378, 190 Mollicutes_sp_X83438, 191 Acholeplasma_palmae, 192 Mollicutes_X76425, ; TREE Tree3031 = [&R] (191,((((((68,((151,(28,((184,(139,((41,(189,((160,10),(29,(81,185))))),(35,24)))),(162,((158,154),(182,(89,82))))))),(118,(33,(27,(40,(74,(153,34)))))))),(179,(138,51))),(150,(32,(31,61)))),(114,(155,((137,(108,164)),(110,(107,(73,(93,94)))))))),(43,(45,178))),((((((123,(146,92)),((147,124),(176,192))),(187,(49,(52,(121,70))))),(142,188)),(63,(148,166))),((98,(30,(((106,(96,(50,(119,(55,165))))),(((181,72),(174,((26,22),(39,7)))),(4,(25,(62,120))))),(57,105)))),(((((((85,((140,112),(130,(18,53)))),(97,172)),(115,180)),((((163,(145,(177,((6,((186,(141,(143,171))),(56,83))),(87,169))))),(47,(126,46))),((((135,(13,14)),(134,(122,99))),(65,(116,64))),(75,(76,(69,((125,170),(86,103))))))),((3,(117,(136,38))),(168,84)))),(133,(((109,113),(19,(11,(12,(8,(20,9)))))),((15,(71,(36,(77,42)))),(104,58))))),(190,(173,((157,(149,(95,(78,(132,(111,(79,80))))))),(144,(44,37)))))),(183,(156,(((((54,(152,(175,(161,167)))),(1,2)),(59,(23,60))),(159,(66,67))),(((131,(16,17)),(91,(90,21))),((129,((5,(127,(128,48))),(101,102))),(88,100))))))))))); END;