NEXUS
[File created by TreeBASE:  7/26/07  21:04:31]
[Matrix accession#: M1794]

BEGIN TAXA;
	TITLE M1794;
	DIMENSIONS  NTAX=29;
	TAXLABELS
		Thinopyrum_elongatum	Taeniatherum_caput_medusae	Secale_montanum_subsp_anatolicum	Secale_cereale	Pseudoroegneria_spicata_804B_610A	Pseudoroegneria_spicata_352A_325A	Peridictyon_sanctum	Hordeum_vulgare	Hordeum_murinum_989A_297A	Hordeum_marinum_1246C_301A	Hordeum_jubatum	Hordeum_brachyantherum_subsp_californicum	Heteranthelium_piliferum	Eremopyrum_orientale	Elymus_wawawaiensis_229B_74P	Elymus_wawawaiensis_229A_74A	Elymus_lanceolatus_1049C_604J	Elymus_lanceolatus_1049B_604B	Elymus_hystrix	Elymus_glaucus	Elymus_elymoides_957A_632A	Elymus_elymoides_648C_632C	Elymus_canadensis	Elymus_californicus	Dasypyrum_villosum	Bromus_tectorum	Australopyrum_velutinum	Agropyron_cristatum	Aegilops_comosa
	;
END;

BEGIN CHARACTERS;
	TITLE M1794;
	DIMENSIONS NCHAR=3662;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Thinopyrum_elongatum                            TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTT------C------------------TCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCATCATCCATGTGCTACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTACGGAGCGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTTGTG---TTGTCAAGTGGGACTTTGGACGATTGCCCAGTTGCTCAGTTTTTCTGCCACAAACAA-------TTTTTTTT--CCGCAGCTAATCTATATTC---TTG----C---TT--------------TAATTAGTCGAACTGGGTTACTGATTGAATCTCATATTCTTGCTTTAATT-AGTCGAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT-T-TCAT--GAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGACTTA-GTA---------------------------------------------------------------------------------GTTTGTGTCAA-CTGAAGT---AAT-ATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACAGTGT------------------TC-ATCTCTT---------AGTCTACGAATATACTAGTTGGGTTAAACTGTCGAGACAACGGATATATG-----------------------------------------------------------------------------------------------------------------ACTTCTTAGGAGAACCGGCA------TCGAAGTGCTGATCAGATTTACGTGTATGGAAGTGTAGTTTCTAAG-TGACATTGTCCATTGCTTG-AGGCTAGTGTTCTTCCATCCTGTTC------ACC--TTACCTGAA--CAAAGCCTGAGTCCACACAACATATGG------CG-TTCCAAGAGAACCAAACTAGG----AAAAAAAAAGG-TTCTTGAAA-CGACTAT--GCCTTGACTTTTGTTGACTTGGTGGCCTCACAACCTGTT----A-------TGT---------------A-GT--AGGCATATAAACAATTA---GGTTGCTGGCCGGCCTGA-TT--CTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGACATCCTGTCTCTTATGTTGATTGATGGACAGG-CATAATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---?????????????ACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGCTAGCCAGACATTGTGATGATAGTTGCCATGATACAA-TTTCT-----ATGTATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGCTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCTTACAACATCATTACCGTTGAGATCACTTTCTTACACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCWAAGTTTT-GCGCCGTGTTGATAC---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCATCAACTACGACGTCACCACCGTGAGCACCCACCCA--CCCACACAAAG-AT-------------------TT-CTT-CCGGTGATTGCTGGTT-CTGGGT------TCTGACGAACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCCCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGTCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGAGGAGGACGTCCAGATCGTTCTCCTGGTACGTC-----ATCGACCCC------GCAAC-CC--GATC-GCCATTGCTGAAACTTCGATC-AAGCAGACCTAAG----GAAT---------------------------------------------------------------------------GATCGAATGCATTGCAGGGCACCGGGAAGAAGAAGTTCGAGAAGCTACTCAAGAGCATTGAGGAGAAATTCCCGAGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCAGGCGCCGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGAATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------GACGCC---TCTCCTA-CAGCCCTTCTTGCCTGT-TCCTCACCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAGG-T----TTCTTCCAAATTTT-CAGCCGTGCGCGTGCGCGTCCACCGGCGGGCTCGTCGACACCATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTAGGCTCATCGATCCTCTTGT------ATACATTCATTCATCTTGTT-CATCATGGCAGCTCAGACA---GATCATGAAA-TGG-TTTCCTTTT-CTT--CTCGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGTGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTCTCATGGAAGGTAAGTC-ATC---TCT-GGTTT------AGG-ATGC--ATTTCCCAGAACAAC-TAG---CAGTTAAGACTTAAGAC-TACACATATGGTG-C-CGTGTTCGATGCATCCATTAATGGTGGTTTGTG------------CAGGGGCCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGTGTCGAGGGGAGCAAGCCCGGG
		Taeniatherum_caput_medusae                      TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T---TTTTTTTTTC--T-T-T--TCTCTCT-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCATGTGCTACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGGTTCGAGTGGAGTTTTCAGCTCAGTGTTTACGGAGCGGGGTTGA----------CTTTCGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---TTGTTAAGTGGGAGTTTGAACGATTGCCCAGCTGCTCAGTTTTTCTGCCACAAACAA------TTTTTTTTT---CGCAGCTAATC-ATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATTAA-TCGAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCCTGACTCCATCCGTGGAATTTGCCTTGCT--ATCAT--GAGAGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACT-AAA-TAAC-----TA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGTAGTAAT-ATGTTAACTGACTTGGATCTACTGTAATTATG---------------------------------AAAAATAGCTAACAGTAT------------------TC-ATCTCTT---------AGTCTACGAATATACTAGTGGGGTTAAACTGTAGATACAACGGATAGATG-----------------------------------------------------------------------------------------------------------------CCTTCTTAGGCTAACCGGCA------TGGAAGTGCTGATAATATTTACATGTACGGAAGTCTCG---------TGACATTGTCCATTGCTTGTAGGAGACTG---TTACATCTTGTTT------ACC--TTACCT-AA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTGC---AGAA---AAGT-----------T-AAAGG-TTCTTGAAATCGACT-T--GCCTTGACTTTTGTTGACTTGGTGG-CTCACAACCTGTTTTGTACCTTGCTTGTCAATTGATTAAGAAGACGT--AGGCATATAAACAATTA---GGTTGCTGGTCGGCTTGAG-TATTTTTTTGGTACCTTGCTTGTCAATTGATTAAGAAGACATTCTATCTCTTGTGTTGATTGATGGACAGG-CATAATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGATATCGAGGAGACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAATATTGTGATGATAGTAGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTC-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGATC-CTTTCTTACACTTAACCTAAAACCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCG?????????---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCTCCGTCAACTACGACGTCACCACCGTGAGCA----------CCCCCACAAAG-GT-------TTCTTCTTCCTCTT-CTT-CGGGTGATCACTGGTT-CTGGGT------TCTGACGAACGAGGCAAAGTGACAG----GTGTTAGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACCTGATGATCGCCGCCATCCCGGAGATCGTGAAGGACGTGGACGTCCAGATCGTTCTCCTGGTACGTC-----ATCGACCCC------GCAAC-CC--GACC-GCCATTGCTAAAACTTTGATC-AATCAGGCCTAAG----GATT---------------------------------------------------------------------------GATCGAATGCATTGCAGGGCACCGGGAAGAAGAAGTTCGAGCGGCTACTCAAGAGCATCGAGGAGAAATTCCCGAGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCACCGACATACTCGCGGTCAC----------GAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAATGGTA------------------------------------------------------------------------------------------------AACGCC---TCC--------TCCTTCCTGCCAAT-TCCTCACCTCCTGCGCAT-------CGATTCATG-GCCATG------ATGGAAG-A----TTCTTCGAAATTTG-CAGCCGTGCGCGTGCGCGTCGACCGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTACGCTCATCGATCCTCTTGT------GTAAATTCATCAATCTTGTT-CATCCTGGGAGCTCAGACG---GATCATGAAA-TGG-TTTGCTTTT-CTT--CTTGGTGGCCAGTGCAACATGGTGGAGCCGGCGGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTGTCCTGGAAGGTACATA-ATT---TCT-GGTTC------AGG-ATAC--ACTTCCTAGAACAA-TTAA---CAGTTAA-------GAC-TACAT---AGCTG-CTCGTGTTTGAGACATCCATTAATGGTGGCTTGCGC-CAT---GCTGCAGGGGCCTGCCAAGAAC-----------------GGAACTGGGGGTCGAGGGGAGCGAGCCGGGG
		Secale_montanum_subsp_anatolicum                TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C--CCCTTTTTT---C-----CT--T-T-T-T-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCATGTGCTACTGCTGAGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTACGGAGCGGGGTTGAGCGGGGTTGACTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGGGTAATCTGGTG---TTGTTAAGTGGGAGTTTGGACGATTGCCCAGCTGCTCAGTTTTTCTGCCACAAACAAA------TTTTTTTT---CGCAGCTAATCTATATCCCA-TTGTGGTC---TTGATTTTGG-AGCACT----------------------------------------GCTTTAATTAA-TCTAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCTTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GAGTGC----------TGGATCTTATGTTGGTCA-TATA-GGGGATACC-AAA-TAACTGGCTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AAT-ATGTTAACTGACTTGGATCTGCTGAAATTATG---------------------------------AAAAATAGCTGACAGTGT------------------TC-ATCTCCT---------AGTATACGGATATATTAGTTGGGTTAAACTGTCGAGACAATGGATATATG-T------------------------------------------------------------------------------AAGTGCTGATCAGATTTACATGTATTAGTTGTGACTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCAGATTTACATGTATGTAAGTGTAGTTTCCAAG-TGACATTGTCCATTGCTTGTAGGCGACTGTCCTTACATCTTGTTTATTTATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTCC-AGAGAACCAAACTAGG---AAAAAAAAAAGG-TTCCTGAAA-CCACTAT--GCCTTGACTTTTTTTGACTTGGTGG-CTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGCTTGA-TTA-TTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGACATCCTATCTCTTATGTTGATCGATGGACATG-CATAACTGGATTATTACTTTCGCTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGT-TTTGACGCACTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCCGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGATGATAGTAGTCATGATACAA-TTTCT-----ATATATTAATCCTAATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTAATGTTGATTTTCATGCTGTTTATAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGATC-CTTTCTTACACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGT???????????????????---TGCGAGCTCGACAACATCATGCGCCTCACGGGCATCACCGGCATCGTCAACGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCTCCGTCAACTACGACGTCACCACCGTGAGCACCCACCCACACACACACAAAG-AT----------TTCCTCCTCTT-CTT-CCGGTGATCGCCGGTT-CTGGGT--GGGTTCTGACGGACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGACTGCCGGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCGGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGAGGAGGACGTCCAGATCGTTCTCCTGGTACGTC-GTCGATCGACCCG------GCAAC-CC--GACC-GCCATTGCTGAAACTTCGGTC-AAGCAGACCTAATTAAGGAAT---------------------------------------------------------------------------GATCGGATGCGTTGCAGGGCACCGGGAAGAAGAAGTTCGAGAAGCTACTCAAGAGCATCGAGGAGAAGTTCCCCAGCAAGGTGAGGGCCGTGGTCCGGTTCAATGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC--------------TCCTTCTTGCCAGT-TCCTCACCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAAG-T----TTCCTCCAAATTTTTCAGCCGTGCGCGTGCGCGTCGACCGGAGGGCTCGTCGACACCATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTTGACGTATGCTCATCGACCCTCTTGT------GTACATTCATCCATCTTGTT-CATTGTTGCAGCTCGATCA---GACCATGAAA-TGG-TTACCTTTT-CTT--GTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGTGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTGTCCTGGAAGGTACATA-ATT---TCT-GGTTT----CCATG-ATAC--ACTTCCTAGAACAA-TTT--GCCAGTTAG-------GAC-TACAT---AGCTG-CTCGTGTTTGAGACATCCATTGATGGTGGCTTGCGCATAT---GATGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTGCTGGAACTCGGGGTCGAGGGGAGCGAGCCGGGG
		Secale_cereale                                  TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C---CCTTTTTTTT-C-----CT--T-T-T-T-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCATGTGCTACTGCTGAGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTACGGAGCGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGGGTAATCTGGTG---TTGTTAAGTGGGAGTTGGGACGATTGCCCAGCTGCTCAGTTTTTCTGCCACAAACAA-------TTTTTTTT--CCGCAGCTAATCTATATCCCA-TTGTGGTC---TTGATTTTGG-AGCACT----------------------------------------GCTTTAATTAA-TCTAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCTTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GAGTGC----------TGGATCTTATGTTGATCA-TATA-GGGGATACC-AAA-TAACTGGCTTA-GTA---------------------------------------------------------------------------------GT-TATGTCAA-CTGAAGT---AAT-ATGTTAACTGACTTGGATCTGCTGAAATTATG---------------------------------AAAAATAGCTGACAGTGT------------------TC-ATCTCTT---------AGTCTACGGATATATTAGTTGGGTTAAACTGTCGAGACAATGGATATATG-T------------------------------------------------------------------------------AAGTGCTGATCAGATTTACATGTATTAGTTGTGACTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCAGATTTACATGTATGTAAGTGTAGTTTCCAAG-TGACATTGTCCATTGCTTGTAGGCGACTGTCCTTACATCTTGTTTATTTATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTCC-AGAGAACCAAACTAGG----AAAAAAAAAGG-TTCCTGAAA-CCACTAT--GCCTTGACTTTTTTTGACTTGGTGT-CTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATT-T--GGTTGCTGGCCGGCTTGA-TTA-TTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGACATCCTATCTCTTATGTTGATTGATGGACATG-CATAACTGGATTATTACTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATTGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTTTTTGACGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGATGATAGTAGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTAATGTTGATTTTCATGCTGTTTATAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGATC-CTTTCTTACAGTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC---TGCGAGCTCGACAACATCATGCGCCTCACGGGCATCACCGGCATCGTCAACGGCATGGATGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACGTCACCACCGTGAGCACCCACCCACACACACACAAAG-AT----------TTCCTCCTCTT-CTT-CCGGTGATCGCCGGTT-CTGGGT--GGGTTCTGACGGACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGACTGCCGGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCGGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGAGGAGGACGTCCAGATCGTTCTCCTGGTACGTC-----GTCGACCCG------GCAAC-CC--GACC-GCCATTGCTGAAACTTCGGTC-AGGCCGACCTAAG----GAAT---------------------------------------------------------------------------GATCGGATGCATTGCAGGGCACCGGGAAGAAGAAGTTCGAGAAGCTACTCAAGAGCATCGAGGAGAAGTTCCCCAGCAAGGTGAGGGCCGTGGTCCGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTCGCCGTCACCAGCCGCTTCGAGTCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAACGGTG------------------------------------------------------------------------------------------------AACGCTC--TCCTCCTTCCGTCCTTC---------TTGCCAGCTCCTTTGCAT---------ATCCATG-GCCATG------ACCCAAG-T----TTCTTCCAAATTTT-CAGCCGTGCGCGTGCGCGTCGACCGGCGGGCTCGTCGACACCATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGTCTCAGCGTCGACGTATGCTCATCGACCCTCTTGT------GTAAATTCATTCATCTTGCT-CATGGTTGCAGCTCGATCA---GACCATGAAA-TGG-TTACCTTTTTCTT--GTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGTGACCACCCTGAAGCGCGCGGTCAAGGTCGTCGGCACGCCGGCGTACCATGAGATGGTCAAGAACTGCATGATACAAGACCTCTCCTGGAAGGTACATA-ATT---TCT-GGTTC------AGG-ATAC--ACTTCCTAGAACAA-TTAA---CAGTTAG-------GACATACAT---AGCTG-CTCGTGTTTGAGACATCCATTGATGGTGGCTTGCGC-CAT---GTTGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTGCTGGAACTCGGGGTCGAGGGGAGCGAGCCGGGG
		Pseudoroegneria_spicata_804B_610A               TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCATGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA-----------TTTT-CCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAGTT----AT-GCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGG----AAAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTAGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGGTC-TTTTCTTACACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCACCGTCAACGGCATGGACGTCAGTGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACGTCACCACCGTGAGCACCCACCCA--CCCACAAAAAG-AT----------TTCTTCCTCTT-CTT-CTGGTGATCGCTGGTT-CTGGGT------TCTGACGAACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCACTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAGGGTGCCCCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGACGAGGACGTCCAGATCGTTCTCCTGGTATGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAAAGTCTCCTCATAGCTCGCTATGGGGATGGATGGAT----GATTGA-GTGATCGGATGCATTGCAGGGCACCGGGAAGAAAAAGTTCGAGCGGCTGCTCAAGAGCGTGGAGGAGAAATTCCCGGGCAAGGTGAGGGCCGTGGTCAGGTTCAATGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTCGCCGTCACCGGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGAATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC---TCCTCCTTCAGTCCTTCTTGCCAGT-TCCTCACCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAAG-T----TTCTTTCAAATTTT-CAGCCGTGCGCGTGCGCGTCGACAGGCGGGCTCGTCGACACTATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTAGGCTCATCAATCCTCTTGT------ATACATTCATTCTTCTTGTT-CATCATGTCAGCTCAGACA---GATCATGAAA-TGG-TTTACTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCATCAAGGTCGTCGGCACGCCGGCGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTAAGTC-GTC---TCT-GGTTT------AGG-ATAC--ATTTCCCAAAACAACGAA----GAGTTAA-------GAC-TACAA---TGGTG-CTTGTGTTCGATGCATCCATTAATGGTGGTTTGTGC-CAT---GCTGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTCCTGGAACTGGGGGTCGAGGGGAGCGAGCCTGGG
		Pseudoroegneria_spicata_352A_325A               TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCATGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA-----------TTTT-CCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAGGTGTG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTG--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTCCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCCAATTAGGG----AAAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAA-GCTATGAGG-GGC---???????GAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGCTGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCCGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGATC-TTTTCTTACACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGGCTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTG????---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGTGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACGTCACCACCGTGAGCACCCACCCA--CCCACAAAAAG-AT----------TTCTTCCTCTT-CTT-CCGGTGATCGCTGGTT-CTGGGT------TCTGACGAACGA-GCAAAGTGACAGGCAGGTGTTGGAGGGGAAGGCACTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCCCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGACGAGGACATCCAGATCGTTCTCCTGGTATGTT------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAAAGTCTCCTCATAGCTCGCCGTGGGGATGGATGGAT----GATTGA-GTGATCGGATGCATTGCAGGGCACCGGGAAGAAGAAGTTCGAGCGGCTGCTCAAGAGCGTGGAGGAGAAATTCCCGGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCTGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGTGGCCTCATCCAGCTCCAGGGAATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC---TCCTCCTTCAGTCCTTCTTGCCAGT-TCCTCACCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAAG-T----TTCTTTCAAATTTT-CAGCCGTGCGCATGCGCGTCGACAGGCGGGCTCGTCGACACTATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTAGGCTCATCAATCCTCTTGT------ATACATTCATTCATCTTGTT-CATCATGTCAGCTCAGACA---GATCATGAAAATGG-TTTACTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCATCAAGGTCGTCGGCACGCCGGCGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTAAGTC-GTC---TCT-GGTTT------AGG-ATAC--ATTTCCCAGAACAACGAA----GAGTTAA-------GAC-TACAA---TGGTG-CTTGTGTTCGATGCATCCATTAATGGTGGTTTGTGC-CAT---GCTGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTCCTGGAACTGGGGGTCAAGGGGAGCGAGCCTGGG
		Peridictyon_sanctum                             TCCTCGATCGCTTCCTCGACGTCCTGCAGGGCCTCCATGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTT---C------T--T-T-TC--C-CT-C----------CCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCATCATCCATGTGCTACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGC--TCGGCTCAGTGTTTGCGGAGGGGGGTTGA----------CTTTGGGTTAGGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---CTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGCTTTCTGCCACAAACAGA-----TTTTTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGGACT----------------------------------------GCTTTAATT-AGTCGAACTGGGTTACTGATTGATTGAATCTCAAATCGTGCGAGTCAAACCTGACTTCATCCGTGGAACTTGCCTTG-T-TATCAT--GTGTGC----------TGGATCTTATGTTGGTCAGTATACGGG-ATACC-AAA-TAACTGACTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AAT-TTGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACAGTGT------------------TC-ATCTCTT---------AGTCTACGAATATACTAGTTGGGTT-AATT-T-GAGACAACGGATAGATG-----------------------------------------------------------------------------------------------------------------ACTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCAGATTTACATGTATGGAAGTGTAGTTTCCAAG-TGACATTGTCCATTGCTTGTAGGCGACTGTTCTTCCATCTTGTTT------ACC--TTACCTAAA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTCC-AGAGAACCAAACTAGGGG---AAAAAAAAGG-TTCTTGAAA-CGACTAT--GCCTTGACTTTTGTTGACTTGGTGG-CTCACAACCTTTT------------------------------ACGT--AGGCATATAAACAAATA---GGTTGCTGGCCGGCGTGA-TTA-TTTTTTGTTCCCTCGCTTGTCAATTGATTGAGAAGACATCCTATCTCTTATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTATCCAAACATTGTGATGATAGTTGTAATGATGCAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTTTACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTATTAAC-GTGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACCGCTTGGATC-CTTTCTTACACTTAACCTAAAATCTTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGAACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGCGTTC?AAAG????????????????????---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACGTCACCACCGTGAGCACCCACCCA--CCCACACAAAG-AT----------TTCTTCCTCTT-CTT-CTGGTGATCGCTGGCT-CTGGGT------TCTGACGAACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCCCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGACGAGGACGTCCAGATCGTTCTCCTGGTACGTG------------------------------------------------------------------------------CACCGACATTGCTGATCCGTTCAGAAAAGTCTCCTGATGGCTCGCCGTGGGGATGGATGGAT----GATTGA-GTGATCGAATGAATTGCAGGGCACCGGGAAGAAGAAGTTTGAGCGGCTGCTCAAGAGCGTCGAGGAGAAGTTCCCAGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTTGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC--------------TCCTCCTTGCCAAT-TCCTTATCTCCT--GCGC---------ATCCATG-GCCATG------ACCGAAG-T----TTCCTCCAA-TTTT-CAGCCGTGCGCGTGCGCGTCCACCGGCGGGCTCGTTGACACGATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTAGGCTCATCGATC-TCTTGT------GTAA-TTC-TTCATTTTGTT-CATCCTGGCAGCTCAGGTA---GATCATGAAA-TGG-TTCCCTTTT-CTT--CTTGGTGGCCAGTGCAACGTCGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCATGAGATGGTCAAGAACTGTATGATACAGGATCTCTCCTGGAAGGTACATA-ATT---TCT-GGTT--------------------------AACAA-TTG---AGAGTTAA-------GAC-TACAC---GGCTA-GTCGTGTTTGATACATCCATTAATGGTGGCTTGCGC-CAT---GCTGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTCCTGGAACTGGGGGTCGAGGGGAGCGAGCCGGGG
		Hordeum_vulgare                                 TCCTCGACCACTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTTT-C------T--TCTCTCT-CTCTAC----------TCTCGCACTGTTCGATCTCGCACCGGATCCGACCTGTCCCGTCATCCATGTGCTACTGCTGCTCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTTGAGTTTTCAGCTCAGTGTTCGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGTTGTTTTTGTTAAGCGGGAGTTTGGACGATTGCCCAGGTGCTCAGTTTTTCTGCCACGAACAAACAAAA-------TT---CGCAGCTAATCTATATTCCA-TCGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATTAAGTCCAACTAAGTT----ACTGATTGAATCTCAAATSGTGTCAGTCAAACCTGACTTTGTCTGTGGAATTTGCCTTGCT--ATCAT--GCGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ACACG--AA-TAACTGACTTA--TA---------------------------------------------------------------------------------GT-TGTATCAA-CTAAAGT---AATCATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAGTAGCTGACA---------------------------------------------------TATACCAGTTGGGTTGAACTGTCCAGACAGCGGATAGATG-----------------------------------------------------------------------------------------------------------------ACTTCTTAGGACAACC----------------------------------GTATGGAAGTGCCGTTTCCAAG-TGACATTGTCAATTGCTTGTAGGAGACCGTTCTTCCATCTTCTTT----ATACC--GTACCTAAA--CAAAGCTTGAGTCCACACAACATATGG------TGTTTTC-AGAGAACCAAACCAGGG----AAAAAAAAGG-TTCTTGAAA-CGACTAG--GCCTTGACTTTTGTTGACTTGGTGGCCTCACAACCCGTT------------------------------ACGTGTAGGCATATAAACAATTATTAGGTCGCTGGCCGGCTTGA-TTA-TTTTTTGTTACCTTGATTGTCAATTGATTAAGAAGACATCCTATTTCTTATGTTGATTGATGGACATT-CATAATTGAATTATTATTTCCATTAAACAGGTTCAAGAATGCTACGAGGTGGC---?????????????????????GAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCATTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAAGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTTCTTTACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCTCACAGCATCAG-ACCGCTGAGATC-CTTTCTTACACTTAACCTAAAATCTTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTT??????????????????---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGAATCGTCAACGGCATGGACGTCAGTGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACATCACCACCGTGAGCACCCACCCA--CCCACACAAAGGAT----------TTCCTCCTCTT-CTT-CCGGTGATCGCTGGTT-CTGGGTTC----TCTGACTAACGAGGCAAAGTGACAG----GCGTTGGAGGCCAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCGCTGGTGGCCTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCCTGAAGGAGGAGGACGTCCAGATCATTCTCCTTGTACGTG------------------------------------------------------------------------------CACCGACATCGCTGATCCGCACAAAAAGGTCTCCTGATAGCTCCCCGTGAGGATGGATGGAT----GATTGA-GTGATCGGATGAATTGCAGGGCACCGGGAAGAAGAAGTTTGAGAAGCTGCTCAAGAGCATGGAGGAGAAGTTCCCGGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTAGCTCACCAGATGATGGCCGGCGCCGACTTGCTCGCTGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGAATGCGCTATGGAACGGTA------------------------------------------------------------------------------------------------AACGCC---TC-------A-CCCTTCTTGCCAGCAA-CTCACCTCATTTGCAT---------ATCCATG-GCCATG------ACCGAAG-T----TTCTTCCAAATTTT-AAGCCGTGCGTGTGCGCGTCCACCGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTATGCTCATCGATCCTCTTAT------GTAAATTCATTCATCTTGTT-CATCCTGGCTGCTCGATTA---GACCATGAAA-CGG-TTTCCTTT--CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCGGACGTGAAGAAGGTGGCGACCACCCTGAAGCGGGCCGTCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATCCAGGATCTCTCCTGGAAGGTACATA-ATT-----------------------------TTTCACGCAGCAA-T---------TTAAA------GAC-TGCAT---GGCTC----------------------AATGGTGGTCTGGGCGTAT---GCTGCAGGGACCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTGGAGGGGAGCGAGCCGGGG
		Hordeum_murinum_989A_297A                       TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA------------------T-TCT-T-CT-T-T-T-CTCT-CTATATATATATCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCACCCATGTGCTACTGTTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAACTCTCGATGTCGGTAGATTTGTGCGTAATCTGTTGTTTTCGTTAAGTGGGAGTTTGGACGATTATCCAGGTGCCCAGTTTTTCTGCCACAAACAA---------TTTTTT--CCGCTGCTAATCTGTATT-TAGTTGTGGTC---ATGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTC---------------------GAATCTCAAATCGTGTCAGTCAGACCTGACTTCACCTGTGGAATTTGCCTTGCT--ATCAT--GTGTGCTCTGGAAGTCTGGATCTTATGTTGCTCA-TATACGGG-AGGCC-AAA-TAACTTACTTA-GTACTCCTCTGTAAACTAATATAAAAGCATTTAGATCATTAAGTAGTGATCTAAATGCTCTTATATTAGTTTACGGAGGGAGTAGT-TGTGTTAA-CT-AAGT--TAATCGTGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAACTGACAGTGT------------------TCG-TCTCTT--------GAGTCTATGAATATATCAGTCGGGTTAAATTGTCGAGACAACGGCTAGATG-----------------------------------------------------------------------------------------------------------------ACTATTTTGGACAACCGGCA---------------------------------TGGACGTGCCGTTTCCAAG-CGACATTGTCAATTGCTTGTAGGAGACTGTTCTTCCATCTTGTTT----ATAGC--GTACCTAAA--CAAAGCTTGAGTCCACACAACATATGG------CGTTTTC-AGAGAACCAAACCAGGG-----AAAAAAAGG-TTCTTGAAA-CGACTATATGCCGTGACTTTTGTTGACTTGGTGGCCTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCG--TT---TT--TTTTTTGTTACCTTGCTTGTCAATTGATTAAGAAGACATCCTATCTC-TATGTTGATTGATGGACATG-CATAACCGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTATTTGATGCCCTCAAGAATCAAACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTCAGTTAGCCAAACGTTCTGATGGTAGTTGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGGCTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCTAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTATGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGATC-CTTTCTTACACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCG????????????---TGCGAGCTCGACAACATCATGCGCCTCACAGGGATCACCGGCATTGTCAATGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCGGTCAACTACGACATCACCACCGTGAGCACCCACCCA--CCCACACAAAG-AT----------TTCCTCCTCTT-CTT-CTGGTGAACGCCGGTT-TTGAGTTT----TCTGACTAACGAGGCAAAGTGACAG----GCGTTGGAGGCCAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGAACAGGAAGGTGCCGCTGGTGGCCTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCATGAAGGAGGAGGACGTCCAGATCATTCTCCTCGTACGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAAAAAGGTCTCCTGATAGCTCACCGTGGGGATGGATGGATGGATGATTGA-GTGATCGAATGCATTGCAGGGCACCGGGAAGAAGAAGTTTGAGCGGCTGCTCAAGAGCGTGGAGGAGAAGTTCCCAGGCAAGGTGAGGGCCGTGGTCAGGTTCAATGCACCGCTGGCTCACCAGATGATGGCCGGCGCCGACTTGCTCGCGGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTATGGAACGGTA------------------------------------------------------------------------------------------------AACGTC--------------TCCTTCTTT-CCAGTTCCTCACCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAAG-T----TTCTTCCAAAATTT-CAGCCGTGCGCGTGCGCGTCAACGGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACGGGGTTCCACATGGGCCGCCTCAGCGTCGACGTAGGCTCATCCATC-TCTTGT------GTAAATTCATCTTGGCCACTTCACCATGGCAGTTCGATCA---GATCATGAAA-AGG-TTCCCTTTT-CTT--CTTGATGTCCAGTGCAACGTGGTGGAGCCGGACGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATCCAGGATCTCTCCTGGAAGGTACATA-AAT-TATTTTGGGTTT------CA-TTGT-GGTTTGC-AGAACAA-TT--TAA--------------GAC-TACAT---GGCTC----------------------AATGGTGGTCTGGGCGTAT---GCTGCAGGGACCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTGGAGGGGAGCGAGCCGGGG
		Hordeum_marinum_1246C_301A                      TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTT-----C--TC--TG-T------A-TCT-C----------TCTCGCACTGTTCGATCTCGCGCCGGATCCGAACTGTCCCGTCACCCATGTGCTACTGCTGCGCTGCTCCCATTGGTTCCTCTGAACTTTACACGTGGCGCTTCGGGTTTCGATTGGAGC--TCATCTAAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGATTAAGTCTCGATGTCGGTAGATTTGCGGGTAATCTGGTG--TTT-TTAAGTTGGAGTTTGGAC-------------CTCA-------T-CC---------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCTTGCT--ATCAT--GTGTGT----------T-GATCTTAT--------------GG-----CCAAAACTTACTTACT-ACGTA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAACTGATTTGGATCTACTGAAATTATG---------------------------------AGAATTAGCTGACAGTGT------------------TC-ATTTCTT--------GAGCCTACG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------CATACTTACTCCCTTTGTAAACTAATATAAAAGTGTTTATAGATTACTAAAATAGTGTTCTAAATGCTCGTATATTGG----------------------------------------------------------------------------TTTACG-G-A-GGAAGT------------------------------------------------------------------------------------------------A-CGTATATGGAAGTGATGTTTCC---AGAACCAAACTAGGG-----AGTAGAAGG-TTCTTGAAA-CGACTAC--GTCTTGACTTCTGTTGACTTGGTGGCCTCAGAACCTGTT------------------------------ACGT--AGCCATATAAACAATTA---GGTTGCTGGCCGGATTGA-TTA-TTTGTTGTTCCCTTGCTTGCCAATTGATTAAGAAGCCATCCTATCTCTTGTGTTGATTGATGGACATG-CATAATTGAATTATTATTTCCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCCGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGTTGCCGTGATATTATTTTCT-----ATATATTAATCCTAATTTC--AATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAACTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTT--GTTAATTTT-ATGCTGTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAA-ACCGTTGAGACC-CTTTCTTACACT-AACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACCCAGCCCACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCACGAAACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTG????---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGTGAGTGGGACCCCACCAAGGACAAGTTCCTCACCGCCAACTACGACATCACCACCGTGAGCA----------CCCACACAAAG-AT----------TTCCTCCTCTT-CTT-CCAGTGATCGCTGGTT-TTGAGC------TCTGACTAACAAGGCAAAGTGACAG----GCGTTGGAGGCCAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCGCTGGTGGCATTTATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGAGGAGGACGTCCAGATCATTCTCCTCGTACGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAAAAAGGTCTCCTGATAGCTCGCCGTGGGGATGGATGGAT----GATTGA-GTGTTCGAATGCATTGCAGGGCACCGGGAAGAAGAAGTTTGAGCGGCTGCTCAAGAGTGTCGAGGAGAAGTTCCCAGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACTTGCTCGCGGTCACCAGCCGCTTCGAACCCTGCGGCCTGATCCAGCTCCAGGGAATGCGCTATGGAACGGTA------------------------------------------------------------------------------------------------AACGCT--------------TCCTCCTTG-CCAGTTAATCACCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAAA-G----TTCCTTCCAAATTTTCAGCCGTGCGCGTGCGCGTCGACAGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACTGGGTTCCACATGGGCCGCCTCAGCGTCGATGTATGACCATCGATCCTCTTGT------GTAAATTCTTCCATCTTGTT-CATCATGGCAGCTCAGGCA---GATCATTGAAACGG-TTTCCCTTT-CTT--CTTGGTGTCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATCCAGGATCTCTCCTGGAAGGTACATA-ATT-ATTTT-GGGTTT------CA-TGGT-GGTTTGC-ACAACAG-TT--TGAA-------------GAC-TACAT---GGCTC----------------------AATGGTGGGCTGGGCGTAT---GCTGCAGGGACCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTCGAGGGGAGCGAGCCGGGG
		Hordeum_jubatum                                 TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTTT----C-----------T-T-T--TCT-C----------TCTCGCACCGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCATGTGCTACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAGTCTGGTGTTTTTATTAAGTGGGAGTTTGGATGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG---------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCC-----A-TTGCCTTGCT--ATCAT--GTGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGC---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTA----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACTAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCAGAAACTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGA-ATCCTATCTC-TATGTTGATTGATGGACATG-CGTAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTCAGTTAGCCAAACATTGTGATAATAGGTGCCGCGATATTATTTTCT-----ATTTATTAATCCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGATAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTAATTTT-ATGCTTTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTACAGCATCAA-ACCGTTGAGACC-CTTTCTTACACTAAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGACGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCG?????????---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATTGTCAACGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTATGACATCACCACCGTGAGCACCCACCCA--CCCACACAAGG-AT----------TTGCTCCTCTTTCTT-CCGGTGAACGCCGGTT-CTGGGTTC----TCTGACTAATGAGGCAAAGTGACAG----GCGTTGGAGGCCAAGGCGCTGAACAAGGAGGCCCTGCAGGCAGAAGTGGGGCTGCCGGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATTGCCGCCATCCCGGAGATCGTAAAGGAGGAGGACGTCCAGATCATTCTCCTGGTACGTC-----ATCGTCACC------GCAACACC--GACCGA-CATTGCTCAAACTTCGATCAAAGCACACCTAAG----GAAC---------------------------------------------------------------------------GATCGAATGCGTTGCAGGGCACCGGGAAGAAGAAGTTTGAGCGGCTGCTCAAGAGCGTCGAGGAGAAGTTCCCAGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACTTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTGATCCAGCTCCAGGGAATGCGCTACGGAACGGTA-----------------------------------------------------------------------------------------AACCGTAAACGCC-TCC----------TCCTTCTTG-CCAGTTCCTCACCTCATTTGCAT---------ATCCATG-GCCATG------ACCGAAG-C----TTCTTCCCAATTTT-CAGCCGTGCGCGTGCGCGTCGACGGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACCGGGTTCCACATGG-CCGCCTCAGCGTCGACGTATGCTCATCGATCCTCTTGT------GTAAATTCATTCATCTTGTT-CATCCTGGCAGCTCAGACA---AATCATTGAAACGG-TTTCCTTTT-CTT--GTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACAACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAAAACTGCATGATCCAGGATCTCTCCTGGAAGGTACATA-ATT-ATTTT-GGGTTT------AA-ATGGTGGTTTGC-ACAAATA-TT--TAA--------------GAC-TACAT---GGCTC----------------------AATGGCGGTTTGGGCGTAT---GCTGCAGGGACCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTGGAGGGGAGCGAACCGGGG
		Hordeum_brachyantherum_subsp_californicum       TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGGTGGTAA--C-T-CCTTTTT----C--T-T-T--TCTCTCT-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA-GTG-T-------CG--------A--GATT-CTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG---------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCCG------TTGCCTTGCT--ATCAT--GTGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTT----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACTAC--ATCTTGACTTTTGTTGACTTGGTGGCCTCAGGAACTGTT------------------------------ACGT--AGGCATATAAACAATTA---GATTGCTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGCCAATTGATTAAGAAGA-ATCCTATCTC-TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGGTGCCGCGATATTATTTTCT-----ATTTATTAATCCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGCGCTT-ACTGCTATCCTTATGTTAACTTT-ATGCTTTTTCTAAGGCACGTTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTACAGCATCAA-ACCGTTGAGACC-CTTTCTTACACTAAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC---TGCGAGCTCGACAACATCATGCGCCTCACCGGCATCACCGGCATTGTCAATGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACATCACCACCGTGAGCACCCACCCA--CCCACACAAAG-AT----------TCCCTCCTCTT-CTT-CTGGTGAATGCTGGTT-CTGGGTTC----TCTGACTAACGAGGCAAAGTGACAG----GCGTTGGAGGCCAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCAGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATTGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGGTCGCCGCCATCCCGGAGATCGTGAAGGAGGAGGACGTCCAGATCGTTCTCCTTGTACGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAATGCCTCCTGATAGCTCGACGTGGGGATGGATGGAT----GATTGA-GTGGTC-AATGCATTGCAGGGCACCGGGAAGAAGAAGTTTGAGCGGCTGCTCAAGAGTGTGGAGGAGAAGTTCCCGGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGAGCCGAC?TGCTCGCCGTCACCAGCCG?TTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC--------------TCCTCCTTGACAAAATTCTCACCTCCTGCGC-----------ATCTGTG-GCCATG------ATCGAAG-T----TTCTTTCAAATTTG-CAGCCGTGCGCGTGCGCGTCGACGGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTATGCTCATCGATCCTCTTGT------GTAAATTCATTCATCTTGTT-CATCCTGGCAGCACAGGCA---GATCATGACA-TTG-TTTCCTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCAGTCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATCCAGGATCTCTCCTGGAAGGTACATA-ATT-TTTTTTGGGTTT------AA-ATGGTGGTTTGC-ACAACAA-TT--TAA--------------GAC-TACAT---GGCTC----------------------AATGGCGGTTTGGGCGTAT---GCCGCAGGGACCAGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTGGAGGGGAGCGAGCCGGGG
		Heteranthelium_piliferum                        TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTT-----C-C-C-C--C-C-C-C--CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCATCATCCATGTGCCACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGGTTCCAGTGGAGTTTTCAGCTCAGTGTTTACGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGCCGGTAGATTTGTGCGTAATCTGGTG---TTGTTAAGTGGGAGTTTGGACGATTGCCCAGCTGCTCAGTTTTTCCTCCACAAACAA--------TTTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTCTCCTTGATTTTGGGAGCACT----------------------------------------GCTTTAATTAAGTCGAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAACTTGCCTTGCT--ATCAT--GTGTGT----------TGGATCTCATGTTGGTCA-TATACGGG-AGACC-AAA-TAACTGACTTA-GTA---------------------------------------------------------------------------------GT-TGTGTTAA-CTAAAGTA--AATCATGTTAACTGACTTGGATCTACTGAAATTGCG---------------------------------AAAAATAGCTGGCAGTGT-T----------------T--ATCTCTT---------AGTGTACGCATATACTAGTTGGGTTAAACTGTTGAGACAAAGGATAGATG-----------------------------------------------------------------------------------------------------------------ACTTCTTAGGGGAACCGGCA------TAGAAGTGTTGATCATATTTACATGTGTGGAAGTGTAGTTTCCAAG-TGACATT--CCATTGCTTGTAGGGGACTGTTCCTCCATCTTGTTT------ACC--TTACCTATA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTCC-AGACAACCTAACTAGAGG---AAAAAAAAGG-TTCTTCAAA-CGACTAT--GCCTTGACTTTTGTTGACTTGGTGG-CTCACAACCTGTT------------------------------ACGC--AGGCATATAAACAAATA---GGTTGCTGGCCGGCTTGA-TTA-TTTTTTGTTCCATCGCTTGTCAGTTGATTAAGAAGACATCCTAT----TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTACGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTG-TTTTGACATGAAGAAGTCCCCTGCTGAAGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTGCAGAAGCATTCGAGGTTAGTTAGCCAGACATTGTGATGATAGTTGTAATGATGCAA-TTTCT-----ATAACCTAATCCTGATTTC--GATGACTTCATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTCGATGAGGCTCTCCAGAGAGAGGTGCTTTACTGCTATACTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-GTGCCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACCGCTGAGATC-CTTTCTTACACTTAACCTAAAACCTTTCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTT??????????????????????????---TGCGAGCT?GACAACATCATGCGGCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGCGAGTGGGACCCCGTCAAGGACAAGTTCCTCACCGTCAACTACGACGTCACCACCGTGAGCACCCACCCG--CCCACACAAAG-AT----------TTCCTCCTCTT-CCT-CCGGTGATCGCTGGTTTCTGGGT------TCTGACGGAGGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCAGTGGACCGGAAGGTGCCGCTGGTGGCCTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATTTTG---GAGGAGGACGTCCAGATCGTTCTCCTGGTATGTC-----ATCGACCCC------GCAAC-CCCCGACC-GTCATTGCTGGAACTCCGATC-AAGCAGGCCTAAGGAATGATC---------------------------------------------------------------------------GAATGA-TGCATTGCAGGGCACAGGGAAGAAGAAGTTCGAGCGGCTGCTCAAGAGCATCGAGGAGAAGTTCCCGAGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAACGGTG------------------------------------------------------------------------------------------------AACGCCTCCTCCTCCTTCGGTCCTTCTTGCCAGT-TCCTCCCCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAAG-TTAATTTCTTCCAAATTTT-CAGCCGTGCGCGTGCGCGTCGACCGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACCAGGTTCCACATGGGCCGCCTCAGTGTCGACGTAGGTTCATCGATCCTCCTGT------GTCAGTTCATCCATCTTGTT-CATCATGGCAGCTAGATCA---GACCATGAAA-TGG-TTTC-TTTCTATT--GTTGGTGGACAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGACGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTACATA-ATT---TCT-GGTTC------AGG-ATACA--CTTCCTAGAACAA-TT--TACA-GTTAA-------GAC-TACAT---AGCTG-CTCGTGTTTGA-ACATCCATTAATGGTGGCCTGCGC-CAT---GATGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTTCTGGACATGGGGGTCGAGGGGAGCGAG------
		Eremopyrum_orientale                            TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C------------------TCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCATCATCCATGTGGTACTGCTGCGCTGTCCCCGTTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTATGGAGCGGGGTTGA----------CTTTGAGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGTGAGTTTGGACGATTGCCCAGGTCCTCAGGCTTTCTGCCACAAACAG---------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCGAACTGGGTT----ACTGATTGAATCTCAAATCTTGTCAGTCAA?CCTGACTTCATCCGTGGAA-TTGCCTTGCT--ATCAC--GAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGACTTT-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AATCATGTTAATTGACTTGGATCTACTGAAAGTAATCATGTTAACTGACCTGGATCTACTGAAAGTATGAGAA?TAGCTGACACTATATGACTGAAGTAATCATGCC-ATCTCTC--------GAGTCTACG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGATAGATGG-----------------------------------------------------------------------------------------------------------------CTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCATATTTACATGTATGGAAGTGTCGTTACGAAG-TGACATTGTCCATTGCTTGTAGGAGACTATTCTTCCATCCTGTTT------ACC--TTACCTAAACACAAAGCCTGAGTCCACACAGCATAT-G-----ACGTTTCC-AGAGAACCAAACTAGGGG------AAAAAGGGTTCTTGAAA-CGACTAT--GCCTTGACTATTGTTG--------G-CTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGCTTGA-TTA-TTCTTTGTTACCTCGCTTGTCAATTGATTAAGAAGGCATCCTATCTCC-ATGTTGATTGATGGA------------------TTATTTTTACTAAACAGGTTCAAGAATGCTATGAGGTGGC---??????????????????TAAGAGGCTTGTTTTTGACATGAAGAAGTCACCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGATGATAGTTGTAATGATGCAA-TTTCT-----ATAAATTAATCCTGATTTC--GATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTTTATTGCTATCCTTGTGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCCTATAGCATCAG-ACCGCTGAGATC-CTTTCTTACACTTAACCTAAAATCTTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGTGAGTGGGACCCCACCAAGGACAAGTTCCTCTCCGTCAACTACGACATCACCACCGTGAGCA----------CCCACACAAAG-AT----------TTCTTCCTCTT-CTT-TGGGTGATTGCTGGTT-CTGGGT------TCTGACGAACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCAATCCCGGAGATATTGAAGGACGAGGACGTCCAGATCGTTCTCCTGGTACGTC-----ATCGACCCC------GCAAC-CC--GACC-GCCATTGTTAAAACTTCGATC-AATCAGACCTAAG----GATT---------------------------------------------------------------------------GATCGAATGCATTGCAGGGCACCGGAAAGAAGAAGTTCGAGCGGCTACTCAAGAGCATCGAGGAGAAATTCCCGAGCAAGGTGAGGGCTGTGGTCAGGTTCAATGCACCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTACTCGCTGTCACCAGTCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGGACGGTA------------------------------------------------------------------------------------------------AACGCC---TCCTCC-----TCCTTCCTGCCAAT-TCCTCACCTCCCGCGCATCG-------ACCCATG-GCCATG------ACCGAAG-T----TTCTTCCAAATTTG-CAGCCGTGCGCGTGCGCGTCCACCGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACCGGTTTCCACATGGGCCGCCTCAGCGTCGACGTATGCTCATCGATCCTCTTGT------GTAAATTCATCCATCTTGTT-CATCCTGGGAGCTAAGGCA---GATCATCAAA-CGGTTTTCCTTTTTTTCCTGTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCGGACGTGAAGAAGGTGGTGACCACCCTGAAGCGCGCCGTGAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATACAGGATCTGTCCTGGAAGGTACATA-ATT---CCT-GGTTC------AGG-ATACA--CTTCCTAGAACAAC----TAAAAGTTAA-------GAC-TACAC---GGCTG-GTCGTGTTTGATACTTCCATTAATGGTGGCTTGCGC-CATGCTGCTGCAGGGACCTGCCAAGAACTGGGAGGACGTGCTGCTGGAACTGGGGGTCGAGGGGAGCGAGCCGGGG
		Elymus_wawawaiensis_229B_74P                    TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTTT----C------T--T-T-TCT-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA-GTG-T-------CG--------A--GATT-CTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG---------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCCG------TTGCCTTGCT--ATCAT--GTGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTA----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACTAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCAGAAACTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGCCAATTGATTAAGAAGA-ATCCTATCTC-TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGGTGCCGCGATATTATTTTCT-----ATTTATTAATCCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTAATTTT-ATGCTTTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTACAGCATCAA-ACCGTTGAGACC-CTTTCTTACACTAAACCTAAGATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC---TGCGAGCTCGACAACATCATGCGCCTCACCGGCATCACCGGCATCGTCAATGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACATCACCACCGTGAGCACCCACCCA--CCCACACAAAG-AT----------TCCCTCCTCTT-CTT-CCGGTGAATGCTGGTT-CTGGGTTC----TCTGACTAACGAGGCAAAGTGACAG----GCGTTGGAGGCCAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCAGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATTGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGAGGAGGACGTCCAGATCGTTCTCCTTGTACGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAATGCCTCCTGATAGCTCGACGTGGGGATGGATGGAT----GATTGA-GTGGTCGAATGCATTGCAGGGCACCGGGAAGAAGAAGTTTGAGCGGCTGCTCAAGAGTGTGGAGGAGAAGTTCCCGGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGAGCCGACCTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC--------------TCCTCCTTGACAAAATTCTCACCTCCTGCGC-----------ATCTGTG-GCCATG------ATCGAAG-T----TTCTTTCAAATTTG-CAGCCGTGCGCGTGCGCGTCGACGGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTATGCTCATCGATCCTCTTGT------GTAAATTCATTCATCTTGTT-CATCCTGGCAGCACAGGCA---GATCATGAAA-TTG-TTTCCTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCAGTCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATCCAGGATCTCTCCTGGAAGGTACATA-ATT-TTTTG-GGGTTT-----AAA--TGGTGGTTT-GCACAACAA-TT--TAA--------------GAC-TACAT---GGCTC----------------------AATGGCGGTTTGGGCGTAT---GCTGCAGGGACCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTGGAGGGGAGCGAGCCGGGG
		Elymus_wawawaiensis_229A_74A                    TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCATGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA------------TTTCCCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAAGT-AGTCCAACTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGG----AAAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACCACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGGAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGATC-TTTTCTTACACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGC?????????????---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGTGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACGTCACCACCGTGAGCACCCACCCA--CCCACAAAAAG-AT----------TTCTTCCTCTT-CTT-CCGGTGATCGCTGGTT-CTGGGT------TCTGACGAACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCACTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCCCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGACGAGGACGTCCAGATCGTTCTCCTGGTATGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAAAGTCTCCTCATAGCTCGCCGTGGGGATGGATGGAT----GATTGA-G-GATCGGATGCATTGCAGGGAACCGGGAAGAAGAAGTTCGAGCGGCTGCTCAAGAGCGTGGAGGAGAGATTCCCGGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGAATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC---TCCTCCTTCAGTCCTTCTTGCCAGT-TCCTCACCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAAG-T----TTCTTTCAAATTTT-CAGCCGTGCGCGTGCGCGTCGACAGGCGGGCTCGTCGACACTATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTAGGCTCATCAATCCTCTTGT------ATACATTCATTCATCTTGTT-CATCATGTCAGCTCAGACA---GATCATGAAA-TGG-TTTACTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCATCAAGGTCGTCGGCACGCCGGCGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTAAGTC-GTC---TCT-GGTTT------AGG-ATACA--TTTCCCAGAACAAC---G-AAGAGTTAA-------GAC-TACAA---TGGTG-CTTGTGTTCGATGCATCCATTAATGGTGGTTTGTGC-CAT---GCTGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTCCTGGAACTGGGGGTCGAGGGGAGCGAGCCTGGG
		Elymus_lanceolatus_1049C_604J                   TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTTTTT--C--------------C--CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA-GTG-T-------CG--------A--GATT-CTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG---------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCCG------TTGCCTTGCT--ATCAT--GTGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTA----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACTAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCAGAAACTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGCCAATTGATTAAGAAGA-ATCCTATCTC-TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGGTGCCACGATATTATTTTCT-----ATTTATTAATCCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTAATTTT-ATGCTTTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTACAGCATCAA-ACCGTTGAGACC-CTTTCTTACACTAAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTG???????---TGCGAGCTCGACAACATCATGCGCCTCACCGGCATCACCGGCATCGTCAATGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACATCACCACCGTGAGCACCCACCCA--CCCACACAAAG-AT----------TCCCTCCGCTT-CTT-CCGGTGAATGCTGGTT-CTGGGTTC----TCTGACTAACGAGGCAAAGTGACAG----GCGTTGGAGGCCAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCAGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATTGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGAGGAGGACGTCCAGATCGTTCTCCTTGTACGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAATGCCTCCTGATAGCTCGACGTGGGGATGGATGGAT----GATTGA-GTGGTCGAATGCATTGCAGGGCACCGGGAAGAAGAAGTTTGAGCGGCTGCTCAAGAGTGTGGAGGAGAAGTTCCCGGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGAGCCGACCTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCCCCAGGGGATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC--------------TCCTCCTTGACAAAATTCTCACCTCCTGCGC-----------ATCTGTG-GCCATG------ATAGAAG-T----TTCTTTCAAATTTG-CAGCCGTGCGCGTGCGCGTCGACGGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTATGCTCATCGATCCTCTTGT------GTAAATTCATTCATCTTGTT-CATCCTGGCAGCACAGGCA---GATCATGAAA-TTG-TTTCTTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCAGTCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATCCAGGATCTCTCCTGGAAGGTACATA-ATT-TTTTT-GGGTTT-----AAA--TGGTGGTTT-GCACAACAA-TT--TAA--------------GAC-TACAT---GGCTC----------------------AATGGCGGTTTGGGCGTAT---GCTGCAGGGACCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTGGAGGGGAGCGAGCCGGGG
		Elymus_lanceolatus_1049B_604B                   TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTT----C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCATGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTAGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA------------TTTCCCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAAGTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--GTCATATGAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGG-----AAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTAT?AGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATGCTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGATC-TTTTCTTACACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGCTCCAAAGTTTTTGCGCCGTGTTGATAC---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGTGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACGTCACCACCGTGAGCACCCACCCA--CCCACAAAAAG-AT----------TTCTTCCTCTT-CTC-CCGGTGATCGCTGGTT-CTGGGT------TCTGACGAACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCACTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCCCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGACGAGGACGTCCAGATCGTTCTCCTGGTATGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAAAGTCTCCTCATAGCTCGCCGTGGGGATGGATGGAT----GATTGA-GTGATCGAATGCATTGCAGGGCACCGGGAAGAAGAAGTTCGAGCGTCTGCTCAAGAGCGTCGAGGAGAAGTTCCCAGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACTTT--------------TCCTTCTTGCCAAG-TCCTCACCTCCTGCACCG-----------CCATG-GCCATG------ATCGAAG-C----TTCTTCCAACTTTT-CAGCCGTGTGCGTGCGCGTCGACCGGCGGGCTCGTCGACACCATCGTGGAGGGCAAGACTGGGTTCCACATGGGCCGCCTCAGCGTCGATGTAAGTCCATCCATC-TCTTCA------ATAAATTC-TTCATCTTGTT-CATCCTGGCAGCTCAGACA---GACCATGTAA-TGG-TTTCCTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCGGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCATCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTAAGTC-GTC---TCT-GGTTC------AGT-ATACA--CTTCCCGGAACAA-CTAGTAAGAGTTAA-------GAC-TACAC---CGCTG-CTCGTGTTCGATGTATCCATTAATGGTGGCTTGCGCATAT---GATCCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTCGAGGGGAGCGAGCCCGGG
		Elymus_hystrix                                  TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C-------------TCT-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCATGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAG?TTTTCTGCCACAAACAA-----------TTTT-CCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGG-----AAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAATCCTTATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGATC-TTTTCTTACACTTAACTTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC------GAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGTGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTATGACGTCACCACCGTGAGCACCCACCCA--CCCACAAAAAG-AT----------TTCTTCCTCTT-CTT-CCGGTGATCGCTGGTT-CTGGGT------TCTGACGAACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCACTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCCCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCACCCCGGAGATCGTGAAGGACGAGGACGTCCAGATCGTTCTCCTGGTATGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAAAGTCTCCTCATAGCTCGCCGTGGGGATGGATGGAT----GATTGA-GTGATCGGATGCATTGCAGGGCACCGGGAAGAAGAAGTTCGAGCGTCTGCTCAAGAGCGTCGAGGAGAAGTTCCCAGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACTTT--------------TCCTTCTTGCCAAG-TCCTCACCTCCTGCACCG-----------CCATG-GCCATG------ATCGAAG-G----TTCTTCCAACTTTT-CAGCCGTGTGCGTGCGCGTCGACCGGCGGGCTCGTCGACACCATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGATGTAAGTCTATCCATC-TCTTCA------ATAAATTC-TTCATCTTGTT-CATCCTGGCAGCTCAGACA---GACCATGAAA-TGG-TTTCCTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCGGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCATCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTAAGTC-GTC---TCT-GGTTC------AGT-ACACA--CTTCCCGGAACAAC-TAGTAAGAGTTAA-------GAC-TACAC---CGCTG-CTCGTGTTCGATGTATCCATTAATGGTGGCTTGCGCATAT---GATGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTCGAGGGGAGCGAGCCCGGG
		Elymus_glaucus                                  TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCATGTGCTACTGCTACGCTG?TCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA------------TTTCCCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGG---AAAAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTTTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGATC-TTTTCTTACACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC------GAGCTCGACAACATCATGCGCCTCATGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGTGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACGTCACCACCGTGAGCACCCATCCA--CCCACAAAAAG-AT----------TTCTTCCTCTT-CTT-CCGGTGATCGCTGGTT-CTGGGT------TCTGACGAACGAGGCAAAGTGTCAG----GCGTTGGAGGGGAAGGCACTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCCCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGACGAGGACGTCCAGATCGTTCTCCTGGTATGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAAAGCCTCCTCATAGCTCGCCGTGGGGATGGATGGAT----GATTGA-GTGATCGGATGCATTGCAGGGCACCGGGAAGAAGAAGTTCGAGCGTCTGCTCAAGAGCGTCGAGGAGAAGTTCCCAGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACTTT--------------TCCTTCTTGCCAAG-TCCTCACCTCCTGCACCG-----------CCATG-GCCATG------ATCGAAG-C----TTCTTCCAACTTTT-CAGCCGTGTGCGTGCGCGTCGACCGGCGGGCTCGTCGACACCATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGATGTAAGTCCATCCATC-TCTTCA------ATAAATTC-TTCATCTTGTT-CATCCTGGCAGCTCAGACA---GACCATGAAA-TGG-TTTCCTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCGGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCATCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTAAGTC-GTC---TCT-GGTTC------AGT-ATACA--CTTCCCGGAACAA-TTAGTAAGAGTTAA-------GAC-TACAC---CGCTG-CTCGTGTTCGATGTATCCATTAATGGTGGCTTGCGCATAT---GATGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTCGAGGGGAGCGAGCCCGGA
		Elymus_elymoides_957A_632A                      TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTTT----C----T-T-CTCTCTCT-CTCT-C----------TCTCGCACTGTTCGATCTCGCATCGGATCCGAGCTGTCCCGTCATCCA-GTG-T-------CG--------A--GATT-CTCTGAACTTTACATGTGGCGCTTCGTGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG---------TTTTTT---CGCAGCTAGTCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCCG------TTGCCTTGCT--ATCAT--GTGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTA----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACCAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCAGAAACTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGTTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGCCAATTGATTAAGAAGA-ATCCTAT-----ATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGG?---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGGTGCCGCGATATTATTTTCT-----ATTTATTAGTCCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTAATTTT-ATGCTTTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTACAGCATCAA-ACCGTTGAGACC-CTTTCTTACACTAAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC---TGCGAGCTCGACAACATCATGCGCCTCACCGGCATCACCGGCATCGTCAATGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACATCACCACCGTGAGCACCCACCCA--CCCACACAAAG-AT----------TCCCTCCTCTT-CTT-CCGGTGAATGCTGGTT-CTGGGTTC----TCTGACTAACGAGGCAAAGTGACAG----GCGTTGGAGGCCAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCAGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATTGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGAGGAGGACGTCCAGATCGTTCTCCTTGTACGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAATGCCTCCTGATAGCTCGACGTGGGGATGGATGGAT----GATTGA-GTGGTCGAATGCATTGCAGGGCACCGGGAAGAAGAAGTTTGAACGGCTGCTCAAGAGTGTGGAGGAGAAGTTCCCGGGCAAGGTGAGGGCCGTGGTCAGGTTCAATGCGCCGCTGGCTCACCAGATGATGGCCGGAGCCGACCTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC--------------TCCTCCTTGACAAAATTCTCACCTCCTGCGC-----------ATCTGTG-GCCATG------ATCGAAG-T----TTCTTTCAAATTTG-CAGCCGTGCGCGTGCGCGTCGACGGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCATCGACGTATGCTCATCGATCCTCTTGT------GTAAATTCATTCATCTTGTT-CATCCTGGCAGCACAGGCA---GATCATGAAA-TTG-TTTCCTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCAGTCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATCCAGGATCTCTCCTGGAAGGTACATA-ATT-TTTTT-GGGTTT-----AAA--TGGTGGTTT-GCACAACAA-TT--TAA--------------GAC-TACAT---GGCTC----------------------AATGGCGGTTTGGGCGTAT---GCTGCAGGGACCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTGGAGGGGAGCGAGCCGGGG
		Elymus_elymoides_648C_632C                      TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATGCGAGCTGTCCCGTCATCCATGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA------------TTTCCCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAATT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGGGG--AAAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGG?GGC---???????????????????AAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGATC-TTTTCTTACACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC---TGCGAGCTCGACAACATCATGCGCCTCACCGGCATCACCGGCATCGTCAATGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACGTCACCACCGTGAGCACCCACCCA--CCCACAAAAAG-AT----------TTCTTCCTCTT-CTT-CCGGTGATCGCTGGTT-CTGGGT------TCTGACGAACGAGACAAAGTGACAG----GCGTTGGAGGGGAAGGCACTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCCCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGACGAGGACGTCCAGATCGTTCTCTTGGTATGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAAAGTCTCCTCATAGCTCGCCGTGGGGATGGATGGAT----GATTGA-GTGATCGGATGCATTGCAGGGCACCGGGAAGAAGAAGTTCGAGCGGCTGCTCAAGAGCGTGGAGGAGAAATTCCCAGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACATGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGAATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC---TCCTCCTTCAGTCCTTCTTGCCAGT-TCCTCACCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAAG-T----TTCTTTCAAATTTT-CAGCCGTGCGCGTGCGCGTCGACAGGCGGGCTCGTCGACACTATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTAGGCTCATCAATCCTCTTGT------ATACATTCATTCATCTTGTT-CATCATGTCAGCTCAGACA---GATCATGAAA-TGG-TTTACTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCATCAAGGTCGTCGGCACGCCGGTGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTAAGTC-GTC---TCT-GGTTT------AGG-ATACA--TTTCCCAGAACAAC---G-AAGAGTTAA-------GAC-TACAA---TGGTG-CTTGTGTTCGATGCATCCATTAATGGTGGTTTGTGC-CAT---GCTGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTCCTGGAACTGGGGGTCGAGGGGAGCGAGCCTGGG
		Elymus_canadensis                               TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C-------------TCT-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCATGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA-----------TTTT-CCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGGG-----AAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGG-AACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGATC-TTTTCTTACACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGTGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACGTCACCACCGTGAGCACCCACCCA--CCCACAAAAAG-AT----------TTCTTCCTCTT-CTT-CCGGTGATCGCTGGTT-CTGGGT------TCTGACGAACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCACTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCCCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGACGAGGACGTCCAGATCGTTCTCCTGGTATGTC------------------------------------------------------------------------------GACCGACATTGCTGATCCGTTCAGAAAAGTCTCCTCATAGCTTGCCGTGGGGATGGATGGAT----GATTGA-GTGATCGGATGCATTGCAGGGCACCGGGAAGAAGAAGTTCGAGCGGCTGCTCAAGAGCGTGGAGGAGAAATTCCCAGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGAATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC---TCCTCCTTCAGTCCTTCTTGCCAGT-TCCTCACCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAAG-T----TTCTTTCAAATTTT-CAGCCGTGTGCGTGCGCATCGACAGGCGGGCTCGTCGACACTATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCAACGTAGGCTCATCAATCCTCTTGT------ATACATTCATTCTTCTTGTT-CATCATGTCAGCTCAGACA---GATCATGAAA-TGG-TTTACTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCGGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCATCAAGGTCGTCGGCACGCCGGCATACCATGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTAAGTC-GTC-TCT---GGTTT------AGG-ATACA--TTTCCCAGAACAACGAA----GAGTTAAGACT----AC------AATGG-TG-CTTGTGTTCGATGCATCCATTAATGGTGGTTTGTGC-CAT---GCTGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTCCTGGAACTGGGGGTCGAGGGGAGCGAGCCTGGG
		Elymus_californicus                             TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA-T--T-C-TTTTTTT--C------------------TCT-C----------TCTCTCACTGTTCGATCTGGGACCGGATCCGAGCTATCCCATCATCCATGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGC--TCAGCTTAGTGTTTACGGAGTGGGGTTGA----------CTTTGGATTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---TTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGTTTTTCTACCACAAACAAA-A--------TTTT---CGCAGCTAATCTATATTCCA-TTGTGTTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCGAACTGGGTT----ACTGATTGAATCTCAAATCCTGCCAGTCAAACCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GTGTGC----------TGGATCTTATGTTGGTC-GTATACGGG-AGACC-AAA-TAACTTACTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTAAAGT---AATCATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACAGTG------------------GTC-ACCTCTTGAAGTCTTGAGTCTACG-A-ATACCAGTTGGGTTAAACTGTCGAG------------------------------------------------------------------------------------------------------------------------------------------------GCA------TGGAAGTGCTGATCATATTTA-ATGTATGGAAGTGTCGTTTCCAAG-TGACATTGTCCATTGCTTGTAGGAGACTGTTCTTCCATCTTGTTT------ACCTTTTACCTAAA--CAAAGCCTGAGTCCACGCAACATATGG------CGTTTCC-AGAGAACCAAACTAGGGG-----AAAAAAGG-TTCTTGAAA-CGACTAT--GCCTTGACTGTTGTTGACTTGGTGGCCTCACAACCTGTT------------------------------ACGT--ACACATATAAACAATTA---GGTTGCTGGCCGGCTTG-GTTA-TTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGACATCCTATCTCTTATGTTGATTGATGGACATG-CATAATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---????????????????CTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCGAAACATTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTACCCTT--GTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-GTGGCAACACAGTCA-CAGTAGCCTTACAGCATCAG-ACAGTTGAGACC-CTTTGTTACACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC---TGCGAGCTCGACAACATCATGCGGCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGCGAGTGGGAACCAT-CAAGGACAAGTTCCTCGCCGTCAACTACGACGCCACCACCGTGAGCACCCACCCA--CCCCCACAAAG-AT-------TTCCTCCTCTTCTT-CTT-CCGGTGAACGCTGGTT-CTAGGT------TCTGACGAACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCAGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATCGGCATGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCGTGGAGGAGGAGGACGTCCAGATCGTTCTCCTGGTACGTC-----GTCTTCGCC------GCAACGCC--GACC-GACGTTGCTGAAACTTCGATC-AAGCACACCTAAG----GAAT---------------------------------------------------------------------------GATCGAATGCGTTGCAGGGCACCGGGAAGAAGAAGTTCGAGCGGCTGCTCAAGAGCGTGGAGGAGAGGTTACCAGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGGGGCCTCATCCAGCTCCAGGGGATGCGCTATGGAACGGTA------------------------------------------------------------------------------------------------AGCGCC--------------TCTTTCTTGCCAAT-TCCTCAGCTCC--AGCAGACCAGCAC-ATCCATG-GCCATG------ATCGAAA-T----TTCTTCCAAATTTT-CAGCCGTGCGCGTGCGCGTCGACCGGCGGGCTCGTCGACACGATCGTGGAGGGAAAAACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTAAGCTCATCCATG-TCTTCA------ATAAATTC-TTCATCTTGTT-CATCCTGGCAGCTCAGTCA---GATCATGAAA-TGG-TTTCCTTTT-CTT--GTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGATGGTGGCGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTACGTA-ATA---TCT-GGTTT------AGG-ATGCA--TTTCCCAGAACAAC---G-AAGAGTTTA-------GAC-TACAC---GGTCG-CTCGTGTTCGATACATCCATTAATGGTGGTTTGCGC-CAT---GATGCAGGGACCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTCGCTGGGAGCGAGCCAGGG
		Dasypyrum_villosum                              TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAAA-C-T-C-TTTTTTT--C------------C-C--CTCT-C----------TC-C-CACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCATCATCCATGTGCCACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGTTTGCAGCTCAGTGTTTATGGAGTGGGGTTGA----------CTTTCGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---TTGTTAAGTGGGAGTTTGCACGATTGCCCAGGTGCTCAGTTTTTCTGCCACAAGCAA---------TTTTTT---CGCAGCTAATCTGTATTCCA-TTGTGGTC---TTGATTTTGGGGGCACT----------------------------------------GCTTTAATT-AGTCGAACTGTGTT----ATTGGTTGAATTTCAAATTGTGTCAGTCAAACCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GCGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-AGACC-AAA-TAACTTACTAA-GTA--------------------------------------------------------------------------------------------------------ATCATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACAGTGT------------------TC-ATCTCTT--------G----------------AGTTGGGTTAAACTGTCGATACAACGGATAGATGC-----------------------------------------------------------------------------------------------------------------CTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCGTATTTACATGTATGGAAGTGTCGTTTCCAAG-TGACATTGTCCATTGCCTGTAGGAGATTGTTCTTCCATCTTGTTT------ACC--TTACCTAAACAC--AGCCTGAGTCCACCCAACATATGG------CGTTTCC-AGAGAACCAAACTAGGG-----AAAAAAAGG-TTCTTGAAA-CGACTAC--GCCTTGACTTTTGTTGACTTGGTGGCCTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGCTTGA-TTA-TT-TTT---CCCTTGCTTGTCAATTGATTAAGAAGACATCCTATCTCTTATGTTGATTGATGGACAGG-CATAATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACGGTTGATCTTGTGTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATTATAGTTGTAATGATGCAA-TTTCC-----ATATATTAATCTTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTTTACTGCTATCCTTATGTTGATTTTCCTGCTGTTTCTAAGGCACATTGTTAA-TGTGGCAATGCAGTCA-CAGTAGCCTTACAGCATCAG-ACCGCTGATATC-CTTTCTTACACTTAACCTAAAATCTTCCTTTTTTTAGATCCAAGCTGCCTTCAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCC????????????????????????---TGCGAGCTCGACAACATCATGCGCCTCACTGGGATCACCGGCATCGTCAACGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGTCAACTACGACGTCACCACCGTGAGCACCCA------CCCACACAAAG-AT----------TTCTTCCTCTT-CTT-CCGGTGATCGCTGGTT-CTAGGT------TCTGACGAACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCCATGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATTGTGAAGGAGGAGGACGTCCAGATCGTTCTCCTGGTGCGTC-----ATCGACCCC------GCAAC-CC--GACC-GCCATTGCTGAAACTTCGATC-AAGCAGACCTAAG----GAAT---------------------------------------------------------------------------GATCGAATGCATTGCAGGGCACGGGGAAGAAGAAGTTCGAGAAGCTACTCAAGAGCATCGAGGAGAAATTCCCGAGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGAATGCGCTATGGAACGGTA------------------------------------------------------------------------------------------------AACGCC---TCCTCCTTCAGTCCTCCTTGCCAGT-TCCTCGCCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAAG-T----TTCTTTCAAATTTT-CAGCCATGCGCGTGCGCGTCCACCGGCGGGCTTGTCGACACGATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGTGTCGATGTAAGTTCATCCATC-TCTTCA------ATAAATTC-TTCATCTTGTT-CATCCTGGCAGCTCAGGCA---GATCATGAAA-TGG-TTTCCTTTT-CTT--CTTGGTGGCCAGTGTAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGTGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCAGCGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTA-ATAAGTCGTCTCT-GGTTT------AGG-ATGCA--TTTCCCAGAACAACTA-G---CAGTTAAGACT----AC----ACAATGG-TG-CTCGTGTTGGATGCATCCATTAATGGTGGTTTGTGCATAT---GGTGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGTGTCGAGGGGAGCGAGCCCGGG
		Bromus_tectorum                                 TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--CA--C-TTTTTTT--C------------------TCT-C----------TCT--CACTGTTCGATCTCGGACCGGATCCGAGCTATCCCATCATCCATGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGC--TCAGCTTAGTGTTTACGGAGTGGGGTTGA----------CTTCGGATTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---TTCTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGTTTTTCTACCACAAACAAA-A--------TTTT---CGCAGCTAATCTATATTCCA-TTGTGTTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCGAACTGGGTT----ACTGATTGAATCTCAAATCGTGCCAGTCAAACCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GTGTGC----------TGGATCTTATGTTGGTCA-TATACGGA-AGACC-AAA-TAACTTACTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTAAAGT---AATCATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACAGTG------------------GTC-ATCTCTT--------GAGTCTACG-A-ATACCAGTTGGGTTAAACTGTCGAG------------------------------------------------------------------------------------------------------------------------------------------------GCA------TGGAAGTGCTGATCATATTTA-ATGTATGGAAGTGTCGTTTCCAAG-TGACATTGTCC-TTGCTTGTAGGAGACTGTTCTTCCATCTTGTTT------ACCTTTTACCTAAA--CAAAGCCTGAGTCCACGCAACATATGG------CGTTTCC-AGAGAACCAAACTAGGGG-----AAAAAAGG-TTCTTGAAA-CGACTAT--GCCTTGACTGTTGTTGACTTGGTGGCCTCACAACCTGTT------------------------------AAGT--ACACATATAAACAATTA---GGTTGCTGGTCGGCTTG-GTTA-TTTTTTGTTCCCTTGCTTGTCAGTTGATTA--------T--T-T-GCTTATGTTGATTGATGGACATG-CATTATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGA??????---TGACATCGAGGAAACTCTTAAGAGGCTTGTCTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCAAGGTTAGTTAGCCTAACATTGCGCTGATAACTGTCATGATGCAA--TTCTGGAGTATATATTAATCTTGATTCC--AATAA-TTTATTTCAGGATTCGGAACTGTTTGGTCCAGCTATACTCCAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCCATCCCTATATTGATTTTCATGCTGTTCCTAAGGCACATTGTCAAT-GTGGCAATGCAGTCATGATTA-CCTTACAGCATCAG-ACGATTGAGATC-CTTTATTACACTTATCC-AAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGACGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCGAAGTTTTTGCGCCG?GTTGATAC---TGCGAGCTCGACAACATCATGCGGCTCACCGGGATCAGCGGCATCGTCAACGGCATGGACGTCACCGAGTGGAACCCTGCCAAGGACAAGTTCATCGCTGTCAACTATGACGCCACCACCGTGAGCATCCA------CCCACACAAAG-ATGAAACATTTCCTCTTCTTCTT-CTT-CCGGTGATTGCTGGTT-CTGAGC------TCTGATGAACAAGGCAAAGTGACAG----GCGTTGGAGGCCAAGGCGCTGAATAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGCAAGGTGCCTCTGGTGGCCTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGTTGATCGCTGCCATCCCGGAGATTGTGCAGGAGGTGGACGTCCAGATCGTGCTCCTGGTACGTT-----ATCGTCGTCGTTGCCGCAACGCC--------------------------------------------------GACCGACATTGCTGATCCCTCCAGAGAAATCTCCTGATCGCTGCCCATGGGGGTGGATGGAT----GATTGA-ATGGTCGAATACATTGCAGGGCACCGGGAAGAAGAAGTTCGAGCGGCTACTCAAGAGCATCGAGGAGAAGTTCCCGGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTCGCTCACCAGATGATGGCCGGCGCTGACATCCTCGCCGTCACCAGCCGCTTTGAGCCCTGCGGCCTCATCCAGCTCCAGGCGATGCGCTACGGAACGGTATGGAAAAATAAATTGAAAGTGCAGTATTTCTTTTGCTTGCCCAAAGCTTTCGCCGGATCCATGGATGATGGCCAAGAACTCTCTTCTTTGTTT-----------------------------------------------------------------------------------------------------------------CAGCCGTGCGCATGCGCGTCCACCGGCGGGCTCGTCGACACGGTGGTGGAGGGCAGGACCGGGTTC?ACATGGGCCGCCTCAGCGTTGATGTAGGCTCATC?ATCTCATGCT----TAAATTCTTCATCTTGTACCTT-CATCATGGCAGTTCAGACT---GACCATGAAA-TGG-TTTCCGTTTTCCTT-GTTCGTGGCCAGTGCCTCGTGGTGGAGCCGGCCGATGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCAGGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTACTTG-ATC---TCT-GGTTCA-----GTT-ATACA--CTTCCCAGAACAA-T---TAAGAGTTAAAACT--AGAC-GGC-----TGCTCGTGCTTGATACATATATCTATTAATGGTGGCTTGGGCGTAT---GTTGCAGGCGCCTGCCAAGAACTGGGAGGACGTGCTGCTGGAACTGGGGGTCGCCGGGAACGAGCCCGGG
		Australopyrum_velutinum                         TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTTT-C-------------TCT-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTG-CCCATCATCCATGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGA-CC-TCAGCTTAGTGTTTACGGAGTGGGGTTGA----------CTTTGGATTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---TTGTTAAGTGGGACTTTGGACGATTGCCCAGGTGCTCAGATTTTCTGCCACAAACA----------TTTTTT---CGCAGCTA-TCTGTATGCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GTTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAACCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GTGTGC----------TGGATCTTATGTTGGTCA-TATATGGG-ATACC-AAA-TAACTTACTTT-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AATCATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------ACAAATAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTAA-AA-ATACTAGTTGGGCTAAACTGTCGAGACAACGGATGGATGG-----------------------------------------------------------------------------------------------------------------CTTCTTA-----------ACTGTCGTGAAAGTGTTGATCATATTTACTTGTATGGAAGTGATGTTTCCAAG-TGACATT-------------------------------------------------------------------------------------GG------CGTCTCC---AGAACCAAACTAGGG-----AATAGAAGG-TTCTTGAAA-CGACCAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCACAAACTGTT------------------------------ACGC--AGGGATATAAATAATTA---GGTTGCTGGCCGGCTTGA-TTA-TTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGA-ATCCTAGCTC-TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAAACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGATGATAGTTGTAATGATGCAA-TTTCC-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTTTACTGC-ATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAACTGTGGCAATGCAGTCA-CAGTAGCCTTACAGCATTAG-ACCGCTGAGATC-CTTTCTTACACTTAACCTAAAATCTTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC------GAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAATGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCCCCGTCAACTACGATGTCACCACCGTGAGCACCCGCACA--CCCACACAAAG-AT----------TTCTTCCTCTT-CTT-CCGGTGATCGCTGGTT-CTGGGT------TCTGACGAACAAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATCGGCAGACTGGAGGAGCAGAAGGGCCCCGACGTGCTGATCGCCGCCATCCCGGAGATCGTGAAGGACGAGGACGTCCAGATTGTTCTCCTGGTACGTC------------------------------------------------------------------------------GACCGACTTTGCTGATCCATTCAGAAAAGTCTCGTGATGGCTCGCTGTGGGGACGAATGGAT----GATTGAAAT--------GCATTGCAGGGCACCGGCAAGAAGAAGTATGAGCGGCTGCTCAAGAGCGTCGAGGAGAAGTTCCCAGGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTAGCTCACCAGATGATGGCCGGCGCCGATGTGCTCGCTGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAAGGAATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC---TCCTCCTTCAGTCCTTCTTGCCAGT-TCCTCACCTCCTTTGCAT---------ATCCATG-GCCATG------ACCGAAG-T----TTCTTCCAAATTTT-CAGCCGTGCGCTTGCGCGTCGACCGGCGGGCTCGTCGACACTATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGCCTCAGCGTCGACGTAGGCTCATCAATCCTCTTGT------ATACATTCATTCATCTTGTT-CA--------GCTCAGACG---GATCATGAAA-TGG-TTTACTTTT-CTT--CTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTAAGTC-GTC---T---GGTTC------AGT-ATACA--CTTCCCGGAACAAC----TAAGAGTTAG-------GAC-TACAC---CGCTG-CTCGTGTTCGATGTATCCATTAATGGTGGCTTGCGCATAT---GCTGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTCGGGGTCGAGGGGAGCGAGCCTGGG
		Agropyron_cristatum                             TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTT---C------------------TCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTATCCCATCATCCATGTGCTACTGCTGCGCTGTCCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTAGGGAGCGGGGTTGA----------CTTTGGGTTAAGTCTTGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTCAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGCTTTCTGCCACAAACAGA---------TTTCT---CGCAGCTAATCTATATTGCA-CTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCGAAGTGGGTTACTTACTGATTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAC--GAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGACTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AATCATGTTAACTGGCCTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACACTATATGACTGAAGTAATCAT---------------------------------------------AA---GT--AGA-----------TG-----------------------------------------------------------------------------------------------------------------ACTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCATATTTACATGTATGGAAGTGTCGTTACGAAG-TGACATTGTCCATTGCTTGTAGGAGACTATTCTTCCATCCTGTTT------ACC--TTACCTAAACACAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGACCCAAACTAGGGG---AAAAAAAAGG-TTCTTTAAA-CGACTAT--GCCTTGACTATTGTTGACTTGGTGG-CTCACAGCCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGCTTGA-TTA-TTCTTTGTTACCTCGCTTGTCAATTGATTAACAAGGCATCCTATCTCC-ATGTTGATTGATGGA------------------TTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---????????????????????????????????????????????????????????????????GATGCCTTCAAGAATCAGACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGAGGATAGTTGTAATGATGCAA-TTTCT-----ATAAATTAATCCTGATTTC--GATGACTTTATATCAGGATCCGGAACTGCTTGGTTCAGTTATACTCGAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTTTACTGCTATCCTTGTGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCCTACAGCATCAG-ACCACTGAGATT-CTTTCTTACACTTAACCTAAAATCTTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCC????????????????????????---TGCGAGCTCGACAACATCATGCGCCTCACGGGGATCACCGGCATCGTCAACGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCTCCGTCAACTACGACGTCACCACCGTGAGCA----------CCCCCACAGAG-AT-------TTCTTCTTCCTCTT-CTT-CCGGTGATCGCTGGTT-CTGGGT------TCTGACGAACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACAGGAAGGTGCCGCTGGTGGCGTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGATGTGATGATCGCCGCCATCCCGGAGATCGTGAAGGACGTGGACGTCCAGATCGTTCTCCTGGTACGCCACGCCATCGACCCC------GCAAC-CC--GACC-GCCATTGCTAAAACTTCGATC-AATCAGACCTAAG----GATT---------------------------------------------------------------------------GATCGAATGCATTGCAGGGCACCGGGAAGAAGAAGTTCGAGCGGCTACTCAAGAGCATCGAGGAGAAATTCCCGAGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCGCCGACATACTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGC-TCATCCAACTCCAGGGGATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AACGCC---TCCTCC-----TCCTTCCTGCCAAC-TCCTCATCTCCTGCGC-----------ATCCAT---CCATGGCCATGACCGAAG-T----TTCTTCCGAATTTG-CAGCCGTGCGCGTGCGCGTCCACCGGCGGGCTCGTCGACACGATCGTGGAGGGCAAGACCGGGTTCCA?ATGGGCCGCCTCAGCGTCGACGTATGCTCATCGATCCTCTTGTATAC--GTACATTCATCCATCTTGTT-CATCATGGCAGCTCAGACA---GATCATGACA-TGG-TTTCCTTTTTCTT--CTTAGTGGCCAGTGCAATGTGGTGGAGCCGGCGGACGTGAAGAAGGTGGCGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCGGCGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTAAATA-ATC-----------------------------------GCAACAA-T---------TTAA-------GAC-TACAT---GGCTC----------------------ATTGTTGGTTTGGGCATAT---GCTGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGGGTGGAGGGGAGCGAGCCGGC-
		Aegilops_comosa                                 TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGTTCTCAGGGAGATGGTAA--C-T---TTTTTTTT-C------------------T-T------------T-T-ACACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCATCATCCATGTGCTACTGCTGCGTTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCGGGGTTCGA-TGGAGTTTTCAGCTCAGTGTTTGCGGGGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTTGCG---TTGTTAAGTGGGACTTTGGACGATTGTCCAGCTGCTCAGTTTTTCTGCCACAAACAG------TTTTTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCGAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--GAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACT-ACA-TAACTGGCTTA-GTT---------------------------------------------------------------------------------GT-TGTGTGAA-CTGAAGT---AAT-ATGTTAACTGACTTGGATCTACTGTAATTATG---------------------------------AAAAATAGCTGACAGT----------------------------------------------------------------AAACTGTTGATACAACGGATAGATG-----------------------------------------------------------------------------------------------------------------CCTTCTTAGGCTAACCGGCA------TGGAAGTGCTGATAATATTTACATGTATGGAAGTCTCG------A---GACATTGTCCATTGCTTGTAGGAGACTGTT---ACATCTTGTTT------ACC--TTACCT-AA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTCC-AGAGAACAAAACTAGGGGG-----AAAAAGG-TTCTTGAAATCGACTAT--GCCTTGACTTTTGTTGACTTGGTGG-CTCACAACCAGTTTGGTACCTTGCTTGTCAATTGATTAAGAAGACGT--AGGCATATAAACAATTA---GGTTGCTGGTCGGCTTGA-TTATTTTTTTGGTACCTTGCTTGTCAATTGATTAAGAAGACATTCTATCTCTTATGTTGATTGATGGACAGG-CATAATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACAT?GAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCGGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAACCAAACATTGTGATGATAGTTGTCATGATACGA-TTTCT-----ATATATTAATCCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTGTACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCCCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTACGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCTTACAGCATCATTACCATTGAGGTC-CTTTCTTACACTTAACCTAAAATCCTCCTTTTT--AGATTCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGT?GATAC---TGCGAGCTCGACAACATCATGCGCCTCACGGGCATCACCGGCATCGTCAACGGCATGGACGTCAGCGAGTGGGACCCCACCAAGGACAAGTTCCTCGCCGCCAACTACGACATCACCACCGTGAGCA---A-------CCACACAAAG-AT----------TTCTTCCTCTT-CTTGCCGGTGATCGCTGGCT-CTGGGT--GGGTTCTGACGGACGAGGCAAAGTGACAG----GCGTTGGAGGGGAAGGCGCTGAACAAGGAGGCGCTGCAGGCCGAGGTGGGGCTGCCGGTGGACCGGAAGGTGCCGCTGGTGGCCTTCATCGGCAGGCTGGAGGAGCAGAAGGGCCCCGACGTGATGATCGCCGCCATCCCGGAGATCCTGAAGGAGGAGGACGTCCAGATCGTTCTCCTGGTACGTC--GCCATCGACCCC--GGCCGCAAC-CC--GACG-GCCATTGCCGAAACTTCGATC-AGGCAGACCTAAG----GAAT---------------------------------------------------------------------------GCTCGAATGCATTGCAGGGCACCGGGAAGAAGAAGTTCGAGCGGCTGCTCAAGAGCATTGAGGAGAAGTTCCCGAGCAAGGTGAGGGCCGTGGTCAGGTTCAACGCGCCGCTGGCTCACCAGATGATGGCCGGCACCGACGTGCTCGCCGTCACCAGCCGCTTCGAGCCCTGCGGCCTCATCCAGCTCCAGGGGATGCGCTACGGAACGGTA------------------------------------------------------------------------------------------------AATGCC---TCCTCC-----TCCTTCCTGCCAAT-TCCTTATCTCCTGCGC-----------ATCCATG-GCCATG------ACCGAAG-T----TTCTTCCTAATTTG-CAGCCGTGCGCGTGCGCGTCCACCGGCGGGCTCGTCGACACCATCGTGGAGGGCAAGACCGGGTTCCACATGGGCCGGCTCAGCGTCGATGTAAGTTCATCAATC-TCTGCA------ATAAATTC-TTCATCTTGTT-CATGATTGCA----A--C----------------GG-TTTCCTTTTTCTT--GTTGGTGGCCAGTGCAACGTGGTGGAGCCGGCCGACGTGAAGAAGGTGGTGACCACCCTGAAGCGCGCCGTCAAGGTCGTCGGCACGCCCGCGTACCATGAGATGGTCAAGAACTGCATGATACAGGATCTCTCCTGGAAGGTAAGTC-GTC-TCT---GGTCTGGTTT-AGG-ATGCA--TTTTCCAGAACAACT-----------AAGACT---G-C------AATGG-TG-CTCTTGTTCGATGCATCCATTAATGGTGGTTTGTGC-CAT---GCTGCAGGGGCCTGCCAAGAACTGGGAGGACGTGCTTCTGGAACTGGGTGTCGAGGGGAGCGAGCCGGGG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 3662 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
CHARSET PepC = 1 - 380 391 - 927 935 - 1241 1259 - 1517 1521 - 2128 ; 
 CHARSET PepC_ONE = 1 - 1517 ; 
 CHARSET PepC_TWO = 1521 - 2128 ; 
 CHARSET Waxy = 2132 - 3014 3125 - 3236 3243 - 3464 3544 - 3662 ; 
 CHARPARTITION PepC.Waxy = PepC: 1 - 380 391 - 927 935 - 1241 1259 - 1517 1521 - 2128 , Default: 381 - 390 928 - 934 1242 - 1258 1518 - 1520 2129 - 2131 3015 - 3124 3237 - 3242 3465 - 3543 , Waxy: 2132 - 3014 3125 - 3236 3243 - 3464 3544 - 3662 ; 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 EXSET MESSY = 381 - 390 928 - 934 1242 - 1258 1518 - 1520 2129 - 2131 3015 - 3124 3237 - 3242 3465 - 3543 ; 
 EXSET PEPC_MESSY_AND_REGION_ONE = 1 - 1520 ; 
 EXSET PEPC_MESSY_AND_REGION_TWO = 381 - 390 928 - 934 1242 - 1258 1518 - 2050 ; 
 EXSET PEPC_MESSY_REGION_ONE_AND_GAPS = 1 - 1520 ; 
 EXSET PEPC_MESSY_REGION_TWO_AND_GAPS = 381 - 390 928 - 934 1242 - 1258 1518 - 2050 ; 
 EXSET PEPC_MESSY_REGION_ONE_AND_TWO = 1 - 2050 ; 
 EXSET * Waxy_AND_MESSY = 381 - 390 928 - 934 1242 - 1258 1518 - 1520 2129 - 3662 ; 
 EXSET PepC_AND_MESSY = 1 - 2131 3015 - 3124 3237 - 3242 3465 - 3543 ; 
 END;