NEXUS [File created by TreeBASE: 7/26/07 21:04:31] [Matrix accession#: M1795] BEGIN TAXA; TITLE M1795; DIMENSIONS NTAX=35; TAXLABELS Triticum_aestivum Thinopyrum_elongatum Taeniatherum_caput_medusae Secale_montanum_subsp_montanum Secale_montanum_subsp_anatolicum Secale_cereale Pseudoroegneria_spicata_804B_610A Pseudoroegneria_spicata_352A_325A Peridictyon_sanctum Leymus_racemosus_subsp_sabulosus Hordeum_vulgare Hordeum_murinum_989A_297A Hordeum_marinum_1246C_301A Hordeum_jubatum Hordeum_brachyantherum_subsp_californicum Heteranthelium_piliferum Eremopyrum_orientale Elymus_wawawaiensis_229B_74P Elymus_wawawaiensis_229A_74A Elymus_lanceolatus_1049C_604J Elymus_lanceolatus_1049B_604B Elymus_hystrix_981C_622C Elymus_hystrix_981B_622C Elymus_glaucus Elymus_elymoides_957A_632A Elymus_elymoides_648C_632C Elymus_canadensis_973B_534F Elymus_canadensis_973A_534A Elymus_canadensis_215C_48C Elymus_californicus Dasypyrum_villosum Bromus_tectorum Australopyrum_velutinum Agropyron_cristatum Aegilops_comosa ; END; BEGIN CHARACTERS; TITLE M1795; DIMENSIONS NCHAR=2185; FORMAT DATATYPE = DNA MISSING = ? GAP = - ; MATRIX Triticum_aestivum TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTT---CT-TCT-TG-T-T-T-T-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCATCACCCA-----------TGTGCTACTGCTGCGCTGCTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTCAGGG-TTCGAGTGGAGTTTTCAGCTCAGTGTTTACGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGTGTAATCTGGTG---TTGTTAAGTGGTAGTTTGGACGATTGCCCAGCTGCTCAGTTTTTCTGCCACAAACAAA-------TTTTTTTT---CGCAGCTAATCTATATCCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCGAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCGGTCAAGCATGACTTCATCCGTGGAATTTGCCTCGCTCTATCAT-TGTTGTGTCAACTGATTTTGGCATATAAGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACT-AAA-TAACTGGCTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AAT-ATGTTAACTGACTTGGATCTACTGTAATTATG---------------------------------AAAAATAGCTAACAGTGT------------------TC-ATCTCTT---------AGTCTACGAATATACTAGTTGGGTTAAACTGTCGATACAACGGATAGACG-----------------------------------------------------------------------------------------------------------------CCTTCTTAGGCTAACCGGCA------TGGAAGTGCTGATAATATTTACATGTATGGAAGTCTCG------A---GACATTGTCCATTGCTTGTAGAAGACCGTT---ACATCTTGTTT----ATACC--TTACCT-AA--CAAAGCCTGAG----------ATATGG------CGTTTCC-AGAGAACCAAACTAGGGG-----AAAAAAGG-TTCTTGAAATCGACT-T--GCCTTGACTTTTGTTGACTTGGTGG-CTCACAAC-------CTGTTTGGTACCTTGCTTGTCAATTGATTAAGAAGACGT--AGGCATATAAACAATCA---GGTTGCTGGTCGGCTTGA-TTATCTTTTTGGTACCTTGCTTGTCAGTTGATTAAGAAGACATCCTATATCTTATGTTGATTGATGGACA-GCCATAATTGGATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGT-TTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAACCAAACATTGTGATGATAGTAGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTAC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCGAAGGATATCACTCCAGATGACAAGCAGGAACTTGACGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGACAATGCAGTCA-CAGTAGCCTTA-CAACATCAG-ACAGCTGAGATT-CTTTCTTAC-------ACTTAACCTAGAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAG-ACTCAGCCCGACTCCCCAAGATCACATGCGTGCTGGTATGAGCGACTTTCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Thinopyrum_elongatum TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTT------C------------------TCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCATCATCCA-----------TGTGCTACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTACGGAGCGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTTGTG---TTGTCAAGTGGGACTTTGGACGATTGCCCAGTTGCTCAGTTTTTCTGCCACAAACAA--------TTTTTTTT--CCGCAGCTAATCTATATTC---TTG----C---TT--------------TAATTAGTCGAACTGGGTTACTGATTGAATCTCATATTCTTGCTTTAATT-AGTCGAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT-T-TCAT--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGACTTA-GTA---------------------------------------------------------------------------------GTTTGTGTCAA-CTGAAGT---AAT-ATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACAGTGT------------------TC-ATCTCTT---------AGTCTACGAATATACTAGTTGGGTTAAACTGTCGAGACAACGGATATATG-----------------------------------------------------------------------------------------------------------------ACTTCTTAGGAGAACCGGCA------TCGAAGTGCTGATCAGATTTACGTGTATGGAAGTGTAGTTTCTAAG-TGACATTGTCCATTGCTTG-AGGCTAGTGTTCTTCCATCCTGTTC------ACC--TTACCTGAA--CAAAGCCTGAGTCCACACAACATATGG------CG-TTCCAAGAGAACCAAACTAGG----AAAAAAAAAGG-TTCTTGAAA-CGACTAT--GCCTTGACTTTTGTTGACTTGGTGGCCTCACAAC-------CTGTT----A-------TGT---------------A-GT--AGGCATATAAACAATTA---GGTTGCTGGCCGGCCTGA-TT--CTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGACATCCTGTCTCTTATGTTGATTGATGGACAGG-CATAATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---?????????????ACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGCTAGCCAGACATTGTGATGATAGTTGCCATGATACAA-TTTCT-----ATGTATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGCTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCTTA-CAACATCATTACCGTTGAGATCACTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCWAAGTTTT-GCGCCGTGTTGATAC Taeniatherum_caput_medusae TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T---TTTTTTTTTC--T-T-T--TCTCTCT-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGGTTCGAGTGGAGTTTTCAGCTCAGTGTTTACGGAGCGGGGTTGA----------CTTTCGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---TTGTTAAGTGGGAGTTTGAACGATTGCCCAGCTGCTCAGTTTTTCTGCCACAAACAA-------TTTTTTTTT---CGCAGCTAATC-ATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATTAA-TCGAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCCTGACTCCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGAGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACT-AAA-TAAC-----TA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGTAGTAAT-ATGTTAACTGACTTGGATCTACTGTAATTATG---------------------------------AAAAATAGCTAACAGTAT------------------TC-ATCTCTT---------AGTCTACGAATATACTAGTGGGGTTAAACTGTAGATACAACGGATAGATG-----------------------------------------------------------------------------------------------------------------CCTTCTTAGGCTAACCGGCA------TGGAAGTGCTGATAATATTTACATGTACGGAAGTCTCG---------TGACATTGTCCATTGCTTGTAGGAGACTG---TTACATCTTGTTT------ACC--TTACCT-AA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTGC---AGAA---AAGT-----------T-AAAGG-TTCTTGAAATCGACT-T--GCCTTGACTTTTGTTGACTTGGTGG-CTCACAAC-------CTGTTTTGTACCTTGCTTGTCAATTGATTAAGAAGACGT--AGGCATATAAACAATTA---GGTTGCTGGTCGGCTTGAG-TATTTTTTTGGTACCTTGCTTGTCAATTGATTAAGAAGACATTCTATCTCTTGTGTTGATTGATGGACAGG-CATAATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGATATCGAGGAGACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAATATTGTGATGATAGTAGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTC-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-CTTTCTTAC-------ACTTAACCTAAAACCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCG????????? Secale_montanum_subsp_montanum TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C--CCCTTTTTT---C-----CT--T-T-T-T-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTGAGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTACGGAGCGGGGTTGAGCGGGGTTAACTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGGGTAATCTGGTG---TTGTTAAGTGGGAGTTTGGACGATTGCCCAGCTGCTCAGTTTTTCTGCCACAAACAAA-------TTTTTTTT---CGCAGCTAATCTATATCCCA-TTGTGGTC---TTGATTTTGG-AGCACT----------------------------------------GCTTTAATTAA-TCTAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCTTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATA-GGGGATACC-AAA-TAACTGGCTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AAT-ATGTTAACTGACTTGGATCTGCT??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-------??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????---TGACATTGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTTTTTGACGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGATGATAGTAGTCATGATACAA-TTTCT-----ATATATTAAT---CCT?ATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTAATGTTGATTTTCATGCTGTTTATAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-CTTTCTTAC-------A?TTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Secale_montanum_subsp_anatolicum TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C--CCCTTTTTT---C-----CT--T-T-T-T-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTGAGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTACGGAGCGGGGTTGAGCGGGGTTGACTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGGGTAATCTGGTG---TTGTTAAGTGGGAGTTTGGACGATTGCCCAGCTGCTCAGTTTTTCTGCCACAAACAAA-------TTTTTTTT---CGCAGCTAATCTATATCCCA-TTGTGGTC---TTGATTTTGG-AGCACT----------------------------------------GCTTTAATTAA-TCTAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCTTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATA-GGGGATACC-AAA-TAACTGGCTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AAT-ATGTTAACTGACTTGGATCTGCTGAAATTATG---------------------------------AAAAATAGCTGACAGTGT------------------TC-ATCTCCT---------AGTATACGGATATATTAGTTGGGTTAAACTGTCGAGACAATGGATATATG-T------------------------------------------------------------------------------AAGTGCTGATCAGATTTACATGTATTAGTTGTGACTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCAGATTTACATGTATGTAAGTGTAGTTTCCAAG-TGACATTGTCCATTGCTTGTAGGCGACTGTCCTTACATCTTGTTTATTTATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTCC-AGAGAACCAAACTAGG---AAAAAAAAAAGG-TTCCTGAAA-CCACTAT--GCCTTGACTTTTTTTGACTTGGTGG-CTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGCTTGA-TTA-TTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGACATCCTATCTCTTATGTTGATCGATGGACATG-CATAACTGGATTATTACTTTCGCTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGT-TTTGACGCACTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCCGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGATGATAGTAGTCATGATACAA-TTTCT-----ATATATTAAT---CCTAATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTAATGTTGATTTTCATGCTGTTTATAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-CTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGT??????????????????? Secale_cereale TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C---CCTTTTTTTT-C-----CT--T-T-T-T-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTGAGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTACGGAGCGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGGGTAATCTGGTG---TTGTTAAGTGGGAGTTGGGACGATTGCCCAGCTGCTCAGTTTTTCTGCCACAAACAA--------TTTTTTTT--CCGCAGCTAATCTATATCCCA-TTGTGGTC---TTGATTTTGG-AGCACT----------------------------------------GCTTTAATTAA-TCTAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCTTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGTGC----------TGGATCTTATGTTGATCA-TATA-GGGGATACC-AAA-TAACTGGCTTA-GTA---------------------------------------------------------------------------------GT-TATGTCAA-CTGAAGT---AAT-ATGTTAACTGACTTGGATCTGCTGAAATTATG---------------------------------AAAAATAGCTGACAGTGT------------------TC-ATCTCTT---------AGTCTACGGATATATTAGTTGGGTTAAACTGTCGAGACAATGGATATATG-T------------------------------------------------------------------------------AAGTGCTGATCAGATTTACATGTATTAGTTGTGACTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCAGATTTACATGTATGTAAGTGTAGTTTCCAAG-TGACATTGTCCATTGCTTGTAGGCGACTGTCCTTACATCTTGTTTATTTATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTCC-AGAGAACCAAACTAGG----AAAAAAAAAGG-TTCCTGAAA-CCACTAT--GCCTTGACTTTTTTTGACTTGGTGT-CTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATT-T--GGTTGCTGGCCGGCTTGA-TTA-TTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGACATCCTATCTCTTATGTTGATTGATGGACATG-CATAACTGGATTATTACTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATTGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTTTTTGACGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGATGATAGTAGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTAATGTTGATTTTCATGCTGTTTATAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-CTTTCTTAC-------AGTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Pseudoroegneria_spicata_804B_610A TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA------------TTTT-CCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAGTT----AT-GCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGG----AAAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTAGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGGTC-TTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Pseudoroegneria_spicata_352A_325A TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA------------TTTT-CCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAGGTGTG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTG--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTCCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCCAATTAGGG----AAAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAA-GCTATGAGG-GGC---???????GAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGCTGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCCGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-TTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGGCTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTG???? Peridictyon_sanctum TCCTCGATCGCTTCCTCGACGTCCTGCAGGGCCTCCATGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTT---C------T--T-T-TC--C-CT-C----------CCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCATCATCCA-----------TGTGCTACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGC--TCGGCTCAGTGTTTGCGGAGGGGGGTTGA----------CTTTGGGTTAGGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---CTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGCTTTCTGCCACAAACAGA------TTTTTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGGACT----------------------------------------GCTTTAATT-AGTCGAACTGGGTTACTGATTGATTGAATCTCAAATCGTGCGAGTCAAACCTGACTTCATCCGTGGAACTTGCCTTG-T-TATCAT--G-------------------------TGTGC----------TGGATCTTATGTTGGTCAGTATACGGG-ATACC-AAA-TAACTGACTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AAT-TTGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACAGTGT------------------TC-ATCTCTT---------AGTCTACGAATATACTAGTTGGGTT-AATT-T-GAGACAACGGATAGATG-----------------------------------------------------------------------------------------------------------------ACTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCAGATTTACATGTATGGAAGTGTAGTTTCCAAG-TGACATTGTCCATTGCTTGTAGGCGACTGTTCTTCCATCTTGTTT------ACC--TTACCTAAA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTCC-AGAGAACCAAACTAGGGG---AAAAAAAAGG-TTCTTGAAA-CGACTAT--GCCTTGACTTTTGTTGACTTGGTGG-CTCACAAC-------CTTTT------------------------------ACGT--AGGCATATAAACAAATA---GGTTGCTGGCCGGCGTGA-TTA-TTTTTTGTTCCCTCGCTTGTCAATTGATTGAGAAGACATCCTATCTCTTATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTATCCAAACATTGTGATGATAGTTGTAATGATGCAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTTTACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTATTAAC-GTGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACCGCTTGGATC-CTTTCTTAC-------ACTTAACCTAAAATCTTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGAACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGCGTTC?AAAG???????????????????? Leymus_racemosus_subsp_sabulosus TCCTCGACCGCTTCCTCGATGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTT----------------------TCT-C----------TCTCTCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCATCATCCAGTATCGAGTTGTGTAGTACTACTACGCT---------G-TTCCTCTGAACTTTACATGTGGAGCTTC-GGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTACGGAGTGGGGTTGA----------CTTTGGATTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGCTG---TTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGATTTTCTGCCACAAACAA----------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATTGTGTCAGTCAAACCTGACTTCATCCGTGGAACTTGCCTTGCT--ATCAT--G-------------------------TGTGC----------TGGATCTTATGTTGGTCA-TATTCGGG-AGACC-AAA-TAACTTACTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTAAAGT---AATCATGTTAACGGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACAGTGT------------------TCGATCTCTC--------GAGTCTACG-A-ATACCAGTTGGGTTAAACTGTCGAGATAACGGATAGATG-----------------------------------------------------------------------------------------------------------------ACTTCTTAGGATAACCGGCA------TGGAAGTGCTGATCATACTTACATGTATGGAAGTGTCGTTTCC-AGTTGACATTGTCCATTGCTTGTAGGAGACTGTTCTTCCATCTTGTTT------ACC--TTACCTAAA--CAAAGCCCGAGTCCAAACAACATATGG------CGTTTCC-AGAGAACCAAACTAGGG-----AAAAAAAGGGTTCTTGAAA-CGACTAT--GCCTTGACTTTTGTTGACTTGG-GG-CTCACAAGTCACAACCTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTTTTTGTTACCTTGCTTGTCAACTGATTAAGAAGACATCCTATCTC-TATGTTGATTGATGGACATG-CATAATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATTGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCT-GGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAGCATTGCGATGATAGTTGTCATGATACAA-TTTCT-----ATATAT-AATGATCTTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTAGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTT--GTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-GTGGCAACGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-CTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Hordeum_vulgare TCCTCGACCACTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTTT-C------T--TCTCTCT-CTCTAC----------TCTCGCACTGTTCGATCTCGCACCGGATCCGACCTGTCCCGTCATCCA-----------TGTGCTACTGCTGCTCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTTGAGTTTTCAGCTCAGTGTTCGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGTTGTTTTTGTTAAGCGGGAGTTTGGACGATTGCCCAGGTGCTCAGTTTTTCTGCCACGAACAAACAAAA--------TT---CGCAGCTAATCTATATTCCA-TCGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATTAAGTCCAACTAAGTT----ACTGATTGAATCTCAAATSGTGTCAGTCAAACCTGACTTTGTCTGTGGAATTTGCCTTGCT--ATCAT--G-------------------------CGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ACACG--AA-TAACTGACTTA--TA---------------------------------------------------------------------------------GT-TGTATCAA-CTAAAGT---AATCATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAGTAGCTGACA---------------------------------------------------TATACCAGTTGGGTTGAACTGTCCAGACAGCGGATAGATG-----------------------------------------------------------------------------------------------------------------ACTTCTTAGGACAACC----------------------------------GTATGGAAGTGCCGTTTCCAAG-TGACATTGTCAATTGCTTGTAGGAGACCGTTCTTCCATCTTCTTT----ATACC--GTACCTAAA--CAAAGCTTGAGTCCACACAACATATGG------TGTTTTC-AGAGAACCAAACCAGGG----AAAAAAAAGG-TTCTTGAAA-CGACTAG--GCCTTGACTTTTGTTGACTTGGTGGCCTCACAAC-------CCGTT------------------------------ACGTGTAGGCATATAAACAATTATTAGGTCGCTGGCCGGCTTGA-TTA-TTTTTTGTTACCTTGATTGTCAATTGATTAAGAAGACATCCTATTTCTTATGTTGATTGATGGACATT-CATAATTGAATTATTATTTCCATTAAACAGGTTCAAGAATGCTACGAGGTGGC---?????????????????????GAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCATTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAAGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTTCTTTACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCTCA-CAGCATCAG-ACCGCTGAGATC-CTTTCTTAC-------ACTTAACCTAAAATCTTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTT?????????????????? Hordeum_murinum_989A_297A TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA------------------T-TCT-T-CT-T-T-T-CTCT-CTATATATATATCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCACCCA-----------TGTGCTACTGTTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAACTCTCGATGTCGGTAGATTTGTGCGTAATCTGTTGTTTTCGTTAAGTGGGAGTTTGGACGATTATCCAGGTGCCCAGTTTTTCTGCCACAAACAA----------TTTTTT--CCGCTGCTAATCTGTATT-TAGTTGTGGTC---ATGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTC---------------------GAATCTCAAATCGTGTCAGTCAGACCTGACTTCACCTGTGGAATTTGCCTTGCT--ATCAT--G-------------------------TGTGCTCTGGAAGTCTGGATCTTATGTTGCTCA-TATACGGG-AGGCC-AAA-TAACTTACTTA-GTACTCCTCTGTAAACTAATATAAAAGCATTTAGATCATTAAGTAGTGATCTAAATGCTCTTATATTAGTTTACGGAGGGAGTAGT-TGTGTTAA-CT-AAGT--TAATCGTGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAACTGACAGTGT------------------TCG-TCTCTT--------GAGTCTATGAATATATCAGTCGGGTTAAATTGTCGAGACAACGGCTAGATG-----------------------------------------------------------------------------------------------------------------ACTATTTTGGACAACCGGCA---------------------------------TGGACGTGCCGTTTCCAAG-CGACATTGTCAATTGCTTGTAGGAGACTGTTCTTCCATCTTGTTT----ATAGC--GTACCTAAA--CAAAGCTTGAGTCCACACAACATATGG------CGTTTTC-AGAGAACCAAACCAGGG-----AAAAAAAGG-TTCTTGAAA-CGACTATATGCCGTGACTTTTGTTGACTTGGTGGCCTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCG--TT---TT--TTTTTTGTTACCTTGCTTGTCAATTGATTAAGAAGACATCCTATCTC-TATGTTGATTGATGGACATG-CATAACCGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTATTTGATGCCCTCAAGAATCAAACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTCAGTTAGCCAAACGTTCTGATGGTAGTTGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGGCTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCTAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTATGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-CTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCG???????????? Hordeum_marinum_1246C_301A TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTT-----C--TC--TG-T------A-TCT-C----------TCTCGCACTGTTCGATCTCGCGCCGGATCCGAACTGTCCCGTCACCCA-----------TGTGCTACTGCTGCGCTGCTCCCATTGGTTCCTCTGAACTTTACACGTGGCGCTTC-GGGTTTCGATTGGAGC--TCATCTAAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGATTAAGTCTCGATGTCGGTAGATTTGCGGGTAATCTGGTG--TTT-TTAAGTTGGAGTTTGGAC-------------CTCA-------T-CC----------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCTTGCT--ATCAT--G-------------------------TGTGT----------T-GATCTTAT--------------GG-----CCAAAACTTACTTACT-ACGTA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAACTGATTTGGATCTACTGAAATTATG---------------------------------AGAATTAGCTGACAGTGT------------------TC-ATTTCTT--------GAGCCTACG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------CATACTTACTCCCTTTGTAAACTAATATAAAAGTGTTTATAGATTACTAAAATAGTGTTCTAAATGCTCGTATATTGG----------------------------------------------------------------------------TTTACG-G-A-GGAAGT------------------------------------------------------------------------------------------------A-CGTATATGGAAGTGATGTTTCC---AGAACCAAACTAGGG-----AGTAGAAGG-TTCTTGAAA-CGACTAC--GTCTTGACTTCTGTTGACTTGGTGGCCTCAGAAC-------CTGTT------------------------------ACGT--AGCCATATAAACAATTA---GGTTGCTGGCCGGATTGA-TTA-TTTGTTGTTCCCTTGCTTGCCAATTGATTAAGAAGCCATCCTATCTCTTGTGTTGATTGATGGACATG-CATAATTGAATTATTATTTCCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCCGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGTTGCCGTGATATTATTTTCT-----ATATATTAAT---CCTAATTTC--AATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAACTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTT--GTTAATTTT-ATGCTGTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAA-ACCGTTGAGACC-CTTTCTTAC-------ACT-AACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACCCAGCCC-ACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCACGAAACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTG???? Hordeum_jubatum TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTTT----C-----------T-T-T--TCT-C----------TCTCGCACCGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAGTCTGGTGTTTTTATTAAGTGGGAGTTTGGATGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG----------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCC-----A-TTGCCTTGCT--ATCAT--G-------------------------TGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGC---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTA----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACTAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCAGAAA-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGA-ATCCTATCTC-TATGTTGATTGATGGACATG-CGTAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTCAGTTAGCCAAACATTGTGATAATAGGTGCCGCGATATTATTTTCT-----ATTTATTAAT---CCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGATAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTAATTTT-ATGCTTTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTA-CAGCATCAA-ACCGTTGAGACC-CTTTCTTAC-------ACTAAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGACGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCG????????? Hordeum_brachyantherum_subsp_californicum TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGGTGGTAA--C-T-CCTTTTT----C--T-T-T--TCTCTCT-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA------------GTG-T-------CG--------A--GATT-CTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG----------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCCG------TTGCCTTGCT--ATCAT--G-------------------------TGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTT----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACTAC--ATCTTGACTTTTGTTGACTTGGTGGCCTCAGGAA-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GATTGCTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGCCAATTGATTAAGAAGA-ATCCTATCTC-TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGGTGCCGCGATATTATTTTCT-----ATTTATTAAT---CCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGCGCTT-ACTGCTATCCTTATGTTAACTTT-ATGCTTTTTCTAAGGCACGTTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTA-CAGCATCAA-ACCGTTGAGACC-CTTTCTTAC-------ACTAAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Heteranthelium_piliferum TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTT-----C-C-C-C--C-C-C-C--CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCATCATCCA-----------TGTGCCACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGGTTCCAGTGGAGTTTTCAGCTCAGTGTTTACGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGCCGGTAGATTTGTGCGTAATCTGGTG---TTGTTAAGTGGGAGTTTGGACGATTGCCCAGCTGCTCAGTTTTTCCTCCACAAACAA---------TTTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTCTCCTTGATTTTGGGAGCACT----------------------------------------GCTTTAATTAAGTCGAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAACTTGCCTTGCT--ATCAT--G-------------------------TGTGT----------TGGATCTCATGTTGGTCA-TATACGGG-AGACC-AAA-TAACTGACTTA-GTA---------------------------------------------------------------------------------GT-TGTGTTAA-CTAAAGTA--AATCATGTTAACTGACTTGGATCTACTGAAATTGCG---------------------------------AAAAATAGCTGGCAGTGT-T----------------T--ATCTCTT---------AGTGTACGCATATACTAGTTGGGTTAAACTGTTGAGACAAAGGATAGATG-----------------------------------------------------------------------------------------------------------------ACTTCTTAGGGGAACCGGCA------TAGAAGTGTTGATCATATTTACATGTGTGGAAGTGTAGTTTCCAAG-TGACATT--CCATTGCTTGTAGGGGACTGTTCCTCCATCTTGTTT------ACC--TTACCTATA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTCC-AGACAACCTAACTAGAGG---AAAAAAAAGG-TTCTTCAAA-CGACTAT--GCCTTGACTTTTGTTGACTTGGTGG-CTCACAAC-------CTGTT------------------------------ACGC--AGGCATATAAACAAATA---GGTTGCTGGCCGGCTTGA-TTA-TTTTTTGTTCCATCGCTTGTCAGTTGATTAAGAAGACATCCTAT----TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTACGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTG-TTTTGACATGAAGAAGTCCCCTGCTGAAGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTGCAGAAGCATTCGAGGTTAGTTAGCCAGACATTGTGATGATAGTTGTAATGATGCAA-TTTCT-----ATAACCTAAT---CCTGATTTC--GATGACTTCATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTCGATGAGGCTCTCCAGAGAGAGGTGCTTTACTGCTATACTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-GTGCCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACCGCTGAGATC-CTTTCTTAC-------ACTTAACCTAAAACCTTTCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTT?????????????????????????? Eremopyrum_orientale TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C------------------TCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCATCATCCA-----------TGTGGTACTGCTGCGCTGTCCCCGTTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTATGGAGCGGGGTTGA----------CTTTGAGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGTGAGTTTGGACGATTGCCCAGGTCCTCAGGCTTTCTGCCACAAACAG----------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCGAACTGGGTT----ACTGATTGAATCTCAAATCTTGTCAGTCAA?CCTGACTTCATCCGTGGAA-TTGCCTTGCT--ATCAC--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGACTTT-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AATCATGTTAATTGACTTGGATCTACTGAAAGTAATCATGTTAACTGACCTGGATCTACTGAAAGTATGAGAA?TAGCTGACACTATATGACTGAAGTAATCATGCC-ATCTCTC--------GAGTCTACG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGATAGATGG-----------------------------------------------------------------------------------------------------------------CTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCATATTTACATGTATGGAAGTGTCGTTACGAAG-TGACATTGTCCATTGCTTGTAGGAGACTATTCTTCCATCCTGTTT------ACC--TTACCTAAACACAAAGCCTGAGTCCACACAGCATAT-G-----ACGTTTCC-AGAGAACCAAACTAGGGG------AAAAAGGGTTCTTGAAA-CGACTAT--GCCTTGACTATTGTTG--------G-CTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGCTTGA-TTA-TTCTTTGTTACCTCGCTTGTCAATTGATTAAGAAGGCATCCTATCTCC-ATGTTGATTGATGGA------------------TTATTTTTACTAAACAGGTTCAAGAATGCTATGAGGTGGC---??????????????????TAAGAGGCTTGTTTTTGACATGAAGAAGTCACCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGATGATAGTTGTAATGATGCAA-TTTCT-----ATAAATTAAT---CCTGATTTC--GATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTTTATTGCTATCCTTGTGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCCTA-TAGCATCAG-ACCGCTGAGATC-CTTTCTTAC-------ACTTAACCTAAAATCTTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Elymus_wawawaiensis_229B_74P TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTTT----C------T--T-T-TCT-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA------------GTG-T-------CG--------A--GATT-CTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG----------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCCG------TTGCCTTGCT--ATCAT--G-------------------------TGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTA----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACTAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCAGAAA-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGCCAATTGATTAAGAAGA-ATCCTATCTC-TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGGTGCCGCGATATTATTTTCT-----ATTTATTAAT---CCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTAATTTT-ATGCTTTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTA-CAGCATCAA-ACCGTTGAGACC-CTTTCTTAC-------ACTAAACCTAAGATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Elymus_wawawaiensis_229A_74A TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA-------------TTTCCCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAAGT-AGTCCAACTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGG----AAAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACCAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGGAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-TTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGC????????????? Elymus_lanceolatus_1049C_604J TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTTTTT--C--------------C--CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA------------GTG-T-------CG--------A--GATT-CTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG----------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCCG------TTGCCTTGCT--ATCAT--G-------------------------TGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTA----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACTAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCAGAAA-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGCCAATTGATTAAGAAGA-ATCCTATCTC-TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGGTGCCACGATATTATTTTCT-----ATTTATTAAT---CCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTAATTTT-ATGCTTTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTA-CAGCATCAA-ACCGTTGAGACC-CTTTCTTAC-------ACTAAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTG??????? Elymus_lanceolatus_1049B_604B TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTT----C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTAGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA-------------TTTCCCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAAGTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--GTCATATG-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGG-----AAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTAT?AGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATGCTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-TTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGCTCCAAAGTTTTTGCGCCGTGTTGATAC Elymus_hystrix_981C_622C TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C-------------TCT-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAG?TTTTCTGCCACAAACAA------------TTTT-CCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGG-----AAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAAT---CCTTATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-TTTTCTTAC-------ACTTAACTTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Elymus_hystrix_981B_622C TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTTT----C------T--T-T-TCT-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA------------GTG-T-------CA--------A--GATT-CTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG----------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCCG------TTGCCTTGCT--ATCAT--G-------------------------TGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTTTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTA----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACTAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCAGAAA-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGCCAATTGATTAAGAAGA-ATCCTATCTC-TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---????????????????CTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGGTGCCGCGATATTATTTTCT-----ATCTATTAAT---CCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTAATTTT-ATGCTTTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTA-CAGCATCAA-ACCGTTGAGACC-CTTTCTTAC-------ACTAAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Elymus_glaucus TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTACGCTG?TCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA-------------TTTCCCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGG---AAAAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTTTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-TTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Elymus_elymoides_957A_632A TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTTT----C----T-T-CTCTCTCT-CTCT-C----------TCTCGCACTGTTCGATCTCGCATCGGATCCGAGCTGTCCCGTCATCCA------------GTG-T-------CG--------A--GATT-CTCTGAACTTTACATGTGGCGCTTC-GTGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG----------TTTTTT---CGCAGCTAGTCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCCG------TTGCCTTGCT--ATCAT--G-------------------------TGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTA----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACCAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCAGAAA-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGTTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGCCAATTGATTAAGAAGA-ATCCTAT-----ATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGG?---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGGTGCCGCGATATTATTTTCT-----ATTTATTAGT---CCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTAATTTT-ATGCTTTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTA-CAGCATCAA-ACCGTTGAGACC-CTTTCTTAC-------ACTAAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Elymus_elymoides_648C_632C TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C---------------T-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATGCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA-------------TTTCCCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAATT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGGGG--AAAAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGG?GGC---???????????????????AAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-TTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Elymus_canadensis_973B_534F TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTTT----C------T--T-T-TCT-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA------------GTG-T-------CG--------A--GATT-CTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG----------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCCG------TTGCCTTGCT--ATCAT--G-------------------------TGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTCACAGTGT------------------TC-ATCTCTT--------GAGTTTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTA----------------------------------------------------------------C---TTT--------------------------------GT--ACACCGTATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACTAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCAGAAA-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGCCAATTGATTAAGAAGA-ATCCTATCTC-TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATTGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGCGATAATAGGTGCCGCGATATTATTTTCT-----ATCTATTAAT---CCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCATAGAGAGGTGCTT-ACTGCTATCCTTATGTTAATTTT-ATGCTTTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAACCTTA-CAGCATCAA-ACCGTTGAGACC-CTTTCTTAC-------ACTAAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Elymus_canadensis_973A_534A TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTT--C-------------TCT-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTGTCCCGTCATCCA-----------TGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGC--TCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAATTTGGACGATTGCCCTGGTGCTCAGTTTTTCTGCCACAAACAA------------TTTT-CCCCCTGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCCAACTGAGTT----ATTGCTTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGATTTA-GTA---------------------------------------------------------------------------------GT-AGTGTTAA-CTGAAGT---AATCATATTAACTGACTTGGATCTACTGAAAGTATG---------------------------------AAAAATAGCTGACAGTATATGACTGAAGTAATCATGTC-ATCCCTC--------GAGTCTACG-A-ATAC-AGTTGGGTTAAACTGTCGAGACAACGGATAGAT--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGTTCTTCCATCCTGTTT----ATACC--TTACCTAAA--CAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGAACCAAATTAGGGG-----AAAAAAGGG-TCTTGAAA-CGACTAT--GCCTCGACTTTTGTTGACTTGGTGG-CTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCTGGCTTGA-TTA-TTCTTTGTTACCTTGCTTGTCAATTGATTAAGAAGGCATCCTATCTC-TATGTTGATTGATGGA------------------TTATTTTCACTAAATAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGG-AACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAAC-TTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCCGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-ATGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGATC-TTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Elymus_canadensis_215C_48C TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-CCTTTTT----C------T--T-T-TCT-CTCT-C----------TCTCGCACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCGTCATCCA------------GTG-T-------CG--------A--GATT-CTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTGCGGAGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGTTTTATGCCACATACAG----------TTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGCAGCACT----------------------------------------GCTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAATCTGACTTCATCCG------TTGCCTTGCT--ATCAT--G-------------------------TGTGT----------TGGATCTTAT------------------A-ACC--AA-TAACTTACTTAC-TA---------------------------------------------------------------------------------GT-TCTGTCAA-CTAAAGT---AATCATGTTAATTGATTTGGATCTACTGAAATTATG---------------------------------AGAAGTAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTATG-A-ATACTAGTTGGGTTAAACTGTCGAGACAACGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTA----------------------------------------------------------------C---TTT--------------------------------GT--ACACCATATATGGAAGTGACGTTTCC---AGAACCAAACTAGGG-----AATAGAAGA-TTCTTGAAA-CGACTAC--CTCTTGACTTTTGTTGACTTGGTGGCCTCAGAAA-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGATTGA-TTA-TTTTTTGTTCCCTTGCTTGCCAATTGATTAAGAAGA-ATCCTATCTC-TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTGAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATTGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGATCCCTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATAATAGGTGCCGCGATATTATTTTCT-----ATTTATTAAT---CCTAATTTTATAATGACCTTATATCAGGATCCGGAACTGTTTGGTTCAGCTATGCTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTAATTTT-ATGCTTTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCATC--TA---TTATGAG-ATCCG-A-AGCTG----C-CT---TTACGTAGAAAA-TAGACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Elymus_californicus TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA-T--T-C-TTTTTTT--C------------------TCT-C----------TCTCTCACTGTTCGATCTGGGACCGGATCCGAGCTATCCCATCATCCA-----------TGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGC--TCAGCTTAGTGTTTACGGAGTGGGGTTGA----------CTTTGGATTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---TTGTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGTTTTTCTACCACAAACAAA-A---------TTTT---CGCAGCTAATCTATATTCCA-TTGTGTTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCGAACTGGGTT----ACTGATTGAATCTCAAATCCTGCCAGTCAAACCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------TGTGC----------TGGATCTTATGTTGGTC-GTATACGGG-AGACC-AAA-TAACTTACTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTAAAGT---AATCATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACAGTG------------------GTC-ACCTCTTGAAGTCTTGAGTCTACG-A-ATACCAGTTGGGTTAAACTGTCGAG------------------------------------------------------------------------------------------------------------------------------------------------GCA------TGGAAGTGCTGATCATATTTA-ATGTATGGAAGTGTCGTTTCCAAG-TGACATTGTCCATTGCTTGTAGGAGACTGTTCTTCCATCTTGTTT------ACCTTTTACCTAAA--CAAAGCCTGAGTCCACGCAACATATGG------CGTTTCC-AGAGAACCAAACTAGGGG-----AAAAAAGG-TTCTTGAAA-CGACTAT--GCCTTGACTGTTGTTGACTTGGTGGCCTCACAAC-------CTGTT------------------------------ACGT--ACACATATAAACAATTA---GGTTGCTGGCCGGCTTG-GTTA-TTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGACATCCTATCTCTTATGTTGATTGATGGACATG-CATAATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---????????????????CTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCGAAACATTGTGATGATAGTTGTCATGATACAA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCTACCCTT--GTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-GTGGCAACACAGTCA-CAGTAGCCTTA-CAGCATCAG-ACAGTTGAGACC-CTTTGTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Dasypyrum_villosum TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAAA-C-T-C-TTTTTTT--C------------C-C--CTCT-C----------TC-C-CACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCATCATCCA-----------TGTGCCACTGCTGCGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTGCAGCTCAGTGTTTATGGAGTGGGGTTGA----------CTTTCGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---TTGTTAAGTGGGAGTTTGCACGATTGCCCAGGTGCTCAGTTTTTCTGCCACAAGCAA----------TTTTTT---CGCAGCTAATCTGTATTCCA-TTGTGGTC---TTGATTTTGGGGGCACT----------------------------------------GCTTTAATT-AGTCGAACTGTGTT----ATTGGTTGAATTTCAAATTGTGTCAGTCAAACCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------CGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-AGACC-AAA-TAACTTACTAA-GTA--------------------------------------------------------------------------------------------------------ATCATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACAGTGT------------------TC-ATCTCTT--------G----------------AGTTGGGTTAAACTGTCGATACAACGGATAGATGC-----------------------------------------------------------------------------------------------------------------CTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCGTATTTACATGTATGGAAGTGTCGTTTCCAAG-TGACATTGTCCATTGCCTGTAGGAGATTGTTCTTCCATCTTGTTT------ACC--TTACCTAAACAC--AGCCTGAGTCCACCCAACATATGG------CGTTTCC-AGAGAACCAAACTAGGG-----AAAAAAAGG-TTCTTGAAA-CGACTAC--GCCTTGACTTTTGTTGACTTGGTGGCCTCACAAC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGCTTGA-TTA-TT-TTT---CCCTTGCTTGTCAATTGATTAAGAAGACATCCTATCTCTTATGTTGATTGATGGACAGG-CATAATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACGGTTGATCTTGTGTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCAAGGTTAGTTAGCCAAACATTGTGATTATAGTTGTAATGATGCAA-TTTCC-----ATATATTAAT---CTTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTTTACTGCTATCCTTATGTTGATTTTCCTGCTGTTTCTAAGGCACATTGTTAA-TGTGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCAG-ACCGCTGATATC-CTTTCTTAC-------ACTTAACCTAAAATCTTCCTTTTTTTAGATCCAAGCTGCCTTCAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCC???????????????????????? Bromus_tectorum TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--CA--C-TTTTTTT--C------------------TCT-C----------TCT--CACTGTTCGATCTCGGACCGGATCCGAGCTATCCCATCATCCA-----------TGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGC--TCAGCTTAGTGTTTACGGAGTGGGGTTGA----------CTTCGGATTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---TTCTTAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGTTTTTCTACCACAAACAAA-A---------TTTT---CGCAGCTAATCTATATTCCA-TTGTGTTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCGAACTGGGTT----ACTGATTGAATCTCAAATCGTGCCAGTCAAACCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------TGTGC----------TGGATCTTATGTTGGTCA-TATACGGA-AGACC-AAA-TAACTTACTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTAAAGT---AATCATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACAGTG------------------GTC-ATCTCTT--------GAGTCTACG-A-ATACCAGTTGGGTTAAACTGTCGAG------------------------------------------------------------------------------------------------------------------------------------------------GCA------TGGAAGTGCTGATCATATTTA-ATGTATGGAAGTGTCGTTTCCAAG-TGACATTGTCC-TTGCTTGTAGGAGACTGTTCTTCCATCTTGTTT------ACCTTTTACCTAAA--CAAAGCCTGAGTCCACGCAACATATGG------CGTTTCC-AGAGAACCAAACTAGGGG-----AAAAAAGG-TTCTTGAAA-CGACTAT--GCCTTGACTGTTGTTGACTTGGTGGCCTCACAAC-------CTGTT------------------------------AAGT--ACACATATAAACAATTA---GGTTGCTGGTCGGCTTG-GTTA-TTTTTTGTTCCCTTGCTTGTCAGTTGATTA--------T--T-T-GCTTATGTTGATTGATGGACATG-CATTATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGA??????---TGACATCGAGGAAACTCTTAAGAGGCTTGTCTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCAAGGTTAGTTAGCCTAACATTGCGCTGATAACTGTCATGATGCAA--TTCTGGAGTATATATTAAT---CTTGATTCC--AATAA-TTTATTTCAGGATTCGGAACTGTTTGGTCCAGCTATACTCCAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTT-ACTGCCATCCCTATATTGATTTTCATGCTGTTCCTAAGGCACATTGTCAAT-GTGGCAATGCAGTCATGATTA-CCTTA-CAGCATCAG-ACGATTGAGATC-CTTTATTAC-------ACTTATCC-AAAATCCTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGACGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAAATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCGAAGTTTTTGCGCCG?GTTGATAC Australopyrum_velutinum TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTTTT-C-------------TCT-CTCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTG-CCCATCATCCA-----------TGTGCTACTGCTACGCTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGA-CC-TCAGCTTAGTGTTTACGGAGTGGGGTTGA----------CTTTGGATTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTGGTG---TTGTTAAGTGGGACTTTGGACGATTGCCCAGGTGCTCAGATTTTCTGCCACAAACA-----------TTTTTT---CGCAGCTA-TCTGTATGCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GTTTTAATT-AG---------------------TTGAATCTCAAATCGTGTCAGTCAAACCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------TGTGC----------TGGATCTTATGTTGGTCA-TATATGGG-ATACC-AAA-TAACTTACTTT-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AATCATGTTAACTGACTTGGATCTACTGAAATTATG---------------------------------ACAAATAGCTGACAGTGT------------------TC-ATCTCTT--------GAGTCTAA-AA-ATACTAGTTGGGCTAAACTGTCGAGACAACGGATGGATGG-----------------------------------------------------------------------------------------------------------------CTTCTTA-----------ACTGTCGTGAAAGTGTTGATCATATTTACTTGTATGGAAGTGATGTTTCCAAG-TGACATT-------------------------------------------------------------------------------------GG------CGTCTCC---AGAACCAAACTAGGG-----AATAGAAGG-TTCTTGAAA-CGACCAC--GTCTTGACTTTTGTTGACTTGGTGGCCTCACAAA-------CTGTT------------------------------ACGC--AGGGATATAAATAATTA---GGTTGCTGGCCGGCTTGA-TTA-TTTTTTGTTCCCTTGCTTGTCAATTGATTAAGAAGA-ATCCTAGCTC-TATGTTGATTGATGGACATG-CATAACTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTTTGATGCCCTCAAGAATCAAACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTCCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGATGATAGTTGTAATGATGCAA-TTTCC-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTATACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTTTACTGC-ATCCTTATGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAACTGTGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATTAG-ACCGCTGAGATC-CTTTCTTAC-------ACTTAACCTAAAATCTTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGTTGATAC Agropyron_cristatum TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGTAA--C-T-C-TTTTTT---C------------------TCT-C----------TCTCGCACTGTTCGATCTCGGACCGGATCCGAGCTATCCCATCATCCA-----------TGTGCTACTGCTGCGCTGTCCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGTTTCGAGTGGAGTTTTCAGCTCAGTGTTTAGGGAGCGGGGTTGA----------CTTTGGGTTAAGTCTTGATGTCGGTAGATTTGTGCGTAATCTGGTGTTTTTGTCAAGTGGGAGTTTGGACGATTGCCCAGGTGCTCAGGCTTTCTGCCACAAACAGA----------TTTCT---CGCAGCTAATCTATATTGCA-CTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCGAAGTGGGTTACTTACTGATTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAC--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACC-AAA-TAACTGACTTA-GTA---------------------------------------------------------------------------------GT-TGTGTCAA-CTGAAGT---AATCATGTTAACTGGCCTGGATCTACTGAAATTATG---------------------------------AAAAATAGCTGACACTATATGACTGAAGTAATCAT---------------------------------------------AA---GT--AGA-----------TG-----------------------------------------------------------------------------------------------------------------ACTTCTTAGGAGAACCGGCA------TGGAAGTGCTGATCATATTTACATGTATGGAAGTGTCGTTACGAAG-TGACATTGTCCATTGCTTGTAGGAGACTATTCTTCCATCCTGTTT------ACC--TTACCTAAACACAAAGCCTGAGTCCACACAGCATATGG------CGTTTCC-AGAGACCCAAACTAGGGG---AAAAAAAAGG-TTCTTTAAA-CGACTAT--GCCTTGACTATTGTTGACTTGGTGG-CTCACAGC-------CTGTT------------------------------ACGT--AGGCATATAAACAATTA---GGTTGCTGGCCGGCTTGA-TTA-TTCTTTGTTACCTCGCTTGTCAATTGATTAACAAGGCATCCTATCTCC-ATGTTGATTGATGGA------------------TTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---????????????????????????????????????????????????????????????????GATGCCTTCAAGAATCAGACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAGCCAAACATTGTGAGGATAGTTGTAATGATGCAA-TTTCT-----ATAAATTAAT---CCTGATTTC--GATGACTTTATATCAGGATCCGGAACTGCTTGGTTCAGTTATACTCGAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGGTGCTTTACTGCTATCCTTGTGTTGATTTTCATGCTGTTTCTAAGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCCTA-CAGCATCAG-ACCACTGAGATT-CTTTCTTAC-------ACTTAACCTAAAATCTTCCTTTTT--AGATCCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCC???????????????????????? Aegilops_comosa TCCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGTTCTCAGGGAGATGGTAA--C-T---TTTTTTTT-C------------------T-T------------T-T-ACACTGTTCGATCTCGCACCGGATCCGAGCTGTCCCATCATCCA-----------TGTGCTACTGCTGCGTTGTTCCCATTGATTCCTCTGAACTTTACATGTGGCGCTTC-GGGGTTCGA-TGGAGTTTTCAGCTCAGTGTTTGCGGGGTGGGGTTGA----------CTTTGGGTTAAGTCTCGATGTCGGTAGATTTGTGCGTAATCTTGCG---TTGTTAAGTGGGACTTTGGACGATTGTCCAGCTGCTCAGTTTTTCTGCCACAAACAG-------TTTTTTTTT---CGCAGCTAATCTATATTCCA-TTGTGGTC---TTGATTTTGGGAGCACT----------------------------------------GCTTTAATT-AGTCGAACTGGGTT----ACTGATTGAATCTCAAATCGTGTCAGTCAAGCCTGACTTCATCCGTGGAATTTGCCTTGCT--ATCAT--G-------------------------AGTGC----------TGGATCTTATGTTGGTCA-TATACGGG-ATACT-ACA-TAACTGGCTTA-GTT---------------------------------------------------------------------------------GT-TGTGTGAA-CTGAAGT---AAT-ATGTTAACTGACTTGGATCTACTGTAATTATG---------------------------------AAAAATAGCTGACAGT----------------------------------------------------------------AAACTGTTGATACAACGGATAGATG-----------------------------------------------------------------------------------------------------------------CCTTCTTAGGCTAACCGGCA------TGGAAGTGCTGATAATATTTACATGTATGGAAGTCTCG------A---GACATTGTCCATTGCTTGTAGGAGACTGTT---ACATCTTGTTT------ACC--TTACCT-AA--CAAAGCCTGAGTCCACACAACATATGG------CGTTTCC-AGAGAACAAAACTAGGGGG-----AAAAAGG-TTCTTGAAATCGACTAT--GCCTTGACTTTTGTTGACTTGGTGG-CTCACAAC-------CAGTTTGGTACCTTGCTTGTCAATTGATTAAGAAGACGT--AGGCATATAAACAATTA---GGTTGCTGGTCGGCTTGA-TTATTTTTTTGGTACCTTGCTTGTCAATTGATTAAGAAGACATTCTATCTCTTATGTTGATTGATGGACAGG-CATAATTGAATTATTATTTTCACTAAACAGGTTCAAGAATGCTATGAGGTGGC---TGACAT?GAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCGGAGGTCTTTGATGCCCTCAAGAATCAGACTGTCGATCTGGTTTTGACTGCACATCCAACACAATCTGTAAGGAGGTCACTGCTTCAGAAGCATTCGAGGTTAGTTAACCAAACATTGTGATGATAGTTGTCATGATACGA-TTTCT-----ATATATTAAT---CCTGATTTC--AATGACTTTATATCAGGATCCGGAACTGTTTGGTTCAGTTGTACTCAAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCCCCAGAGAGAGGTGCTT-ACTGCTATCCTTATGTTGATTTTCATGCTGTTTCTACGGCACATTGTTAAC-GTGGCAATGCAGTCA-CAGTAGCCTTA-CAGCATCATTACCATTGAGGTC-CTTTCTTAC-------ACTTAACCTAAAATCCTCCTTTTT--AGATTCAAGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCC-ACTCCCCAAGATGAGATGCGTGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTTTTGCGCCGTGT?GATAC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 - 2185 ; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; EXSET MESSY = 393 - 403 966 - 972 1280 - 1296 1563 - 1565 ; EXSET * PEPC_MESSY_AND_GAPS = 393 - 403 966 - 972 1280 - 1296 1563 - 1565 ; EXSET PEPC_MESSY_AND_REGION_ONE = 1 - 1565 ; EXSET PEPC_MESSY_AND_REGION_TWO = 393 - 403 966 - 972 1280 - 1296 1563 - 2107 ; EXSET PEPC_MESSY_REGION_ONE_AND_GAPS = 1 - 1565 ; EXSET PEPC_MESSY_REGION_TWO_AND_GAPS = 393 - 403 966 - 972 1280 - 1296 1563 - 2107 ; EXSET PEPC_MESSY_REGION_ONE_AND_TWO = 1 - 2107 ; END;