#NEXUS [written Mon May 16 17:54:03 EDT 2011 by Mesquite version 2.74 (build 550) at robert-laports-macbook-pro.local/10.0.1.9] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS Guaiacum_coulteri Larrea_nitida_RSABG01 Larrea_nitida_VANDENITID Larrea_cuneifolia Larrea_divaricata 'Larrea tridentata AZ07-A-212 4x' 'Larrea tridentata SN07-B-04 4x' 'Larrea tridentata var. arenaria CA07-A-225 4x' 'Larrea tridentata var. arenaria CA07-A-226 4x' 'Larrea tridentata TX07-B-305 2x' 'Larrea tridentata AZ07-V-417 6x' 'Larrea tridentata CA07-E-474 6x' 'Larrea tridentata CA07-F-477 4x' Larrea_tridentata_CUATR02_2x 'Larrea tridentata NM07-F-284 2x' 'Larrea tridentata AZ07-K-265 2x' 'Larrea tridentata AZ07-X-444 6x' ; END; BEGIN CHARACTERS; TITLE Laport2011ETSITSmatrix; DIMENSIONS NCHAR=946; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Guaiacum_coulteri GTAAAGGTGCATGTAGATGTTGCGGTTTCGTGTAGAAGTTGGCATCAGATGAACATTGAAGCCGTCTCTTTGCACCACATCATTAATGCTTGCGTTGTGGTGTGGCTCATTGAGCATCGGTTGGTATCCTGGATACGGAACATGCGGGGTCATTCCCCCATT-GCCCGAACGATGGCGCTCGTCGCCC-GTAACGAAA-GACGTCCTCGCCCGTTTTGGCCCGCTCGACCTCTTCCCGGTCGGGGATCACGCGGCGCGGGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAACCCATGCATGTGTAAGTAGTCGAAACCTCTGCATCGCAGAACGACCTGCGGACCCGTCGTTAAAAACCCGGGACGGGGCGAGTGA-GCGAGCCCCTTCCCCC--AACGTCGGGACGACCCGGGGGTGTCAGAATCCGCGGGG-CGTCCCCATTGCCCGAACCAACCCACGACGCGGAACACGCCAAGGAATC-TGAACGAAAGGGCCGCGCCTGCGTGGCCTCTTCACCGAACATAAAACGACTCTCGGCAACGTATATCTCGACTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACACAAGTTG-GCCCGAAGCCTCCGGGCCGAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCACCCACCCCCTGCGGGACAGGGGTGGGAGCGGAATATGGCCTGGGGTGTGCTCCCGCTCGCGGTTGGCCCAAACATGAGTCCCCGGTGCGGAAGCGCGCCACGGCCTGCAGTGGTTGAAACGACCCTTGTTGGAGAGCTGTGCGCGCGTCCCTGCCCCCCGAGGGGCGTTCCCAACCCTCAGCGCGAACGCGCCCACAACG-CGACCCCA- Larrea_nitida_RSABG01 GTAAAGGTGCACG--GAGTT--CGGTGTCTTG-ATAAG-AGGCGCTGGGTGGACCTAATAGCAGCCCCTGTGATCCACGCATGCCTCGCCCCACGT-GGGTGTTGCTGTCACGGCTCACGGGTGCCTTGCTCGGTCTCTAT-T--GGGGTGCTTCCCCCTATCGCCCGAACGAAGGCGCTAGTCGCCTCGTCCCGAAACGACGTCCACGGCCGTTTTGGCAAGTCTGACCTTCTTGGT-TGGGCC-TCATGCGATTTGTGGCGTCAAAGAGGAATGCTACCTGGTTGT-CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAACCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCCGTTGTTAAATCAGGGGGACGGGGCGAGCGAAGCTATCCCTCTACCCC-TCGCGTCGGGATGACCGACGGGAGTAATTGCCCGCGGGG-CGTCCCGGTCGCA-CCACGAACCCACGGCGCGGAACGCGCCAAGGAATCCTTAATCGAAAGACCGCGCTAGCGCGGCC-CTTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTTCGGGCCGAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCACCCACCCCCTGCGGGACAGGGGTGGGAGCGGAATATGGCCTCCCGTGTGCTCTCCCTCGCGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCCTGCGGTGGTTGAAACGACCCTTGCTTGAAGGCCGTGCACGTGACCCCGCCCGTCGAGAGGCACTCACGACCCGCGGCGCCAGTTCGCTCC-AACTACGACCCCA- Larrea_nitida_VANDENITID GTAAAGGTGCATG--GAGTT--CGGTGTCTTG-ATAAG-AGGCGCTGGGTGGACCTAATAGCAGCCCCTGTGATCCACGCATGCCTCGCCCCACGT-GGGTGTTGCTGTCACGGCTCACGGGTGCCTTGCTCGGTCTCTAT-T--GGGGTGCTTCCCCCTATCGCCCGAACGAAGGCGCTAGTCGCCTCGTCCCGAAACGACGTCCACGGCCGTTTTGGCATGTCTGACCTTCTTGGT-TGGGCC-TCATGCGATTTGTGGCGTCAAAGAGGAATGCTACCTGGTTGT-CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAACCCATGCATGTGTAAGTAGTCGAAACCTGCGCAA-GCAGAACGACCCGCGGACCCGTTGTTAAATCAGGGGGACGGGGCGAGCGAAGCTAGCCCTCTACCCC-TCGCGTCGGGATGACCGACGGGAGTAATTGCCCGCGGGG-CGTCCCGGTCGCA-GCACGAACCCACGGCGCGGAACGCGCCAAGGAATCCTTAATCGAAAGACCGCGCTAGCGCGGCC-CTTCTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCGAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCACCCACCCCCTGCGGGACAGGGGTGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCGCGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCCTGCGGTGGTTGAAACGACCCTTGCTTGAAGGCCGTGCACGTGACCCCGCCCGTCGAGAGGCACTCAAGACCCGCGGCGCCAGTTCGCTCC-AACGACGACCCCA- Larrea_cuneifolia GTAAAGGTGCATG--GAGTT--CGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG-T--GGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCC-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGTCGG-ATCGGTGCATGAGTGGTGACAAAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ACGTGTCGGGACGACCGGCGGGAGTAATAGCCCTCGGGG-TGTCCCGATCGCA-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCACCCCTTGCGGGAAAGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGCTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTGCGACCCCGCCCGTTGAGAGGCACTCACGACCCGCGGTGCCAGATCGCGCC-AACGACGACCCCA- Larrea_divaricata GTAAAGGTGCATG-TGAGATGTCGGTGTCTCG-ATAAG-GGGCACCGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCGCCCCACGT-CGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCACCCTATCGCCCGAACGATGGCGCTAGTCGCCC-GTCCCAAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ACGCGTCGGGACGACCGGCGGGAGTAATATCCCTCGGGG-TGTCTCGATCGCA-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCACCCCTTGCGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTGCGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTGCCAGATCGTGCC-AACGACGACCCCA- 'Larrea tridentata AZ07-A-212 4x' GTAAAGGTGCATG-CGAGATGTCGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ACGCGTCGGGACGACCGGCGGGAGTAATATCCCGCGGGG-TGTCTCGATCGCG-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCACCCCTTGCGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTGCGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTGCCAGATCGCGCC-AACGACGACCCCA- 'Larrea tridentata SN07-B-04 4x' GTAAAGGTGCATG-CGAGATGTCGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ACGCGTCGGGACGACCGGCGGGAGTAATATCCCGCGGGG-TGTCTCGATCGCG-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCATCCCTTGCGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTGCGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTGCCAGATCGCGCC-AACGACGACCCCA- 'Larrea tridentata var. arenaria CA07-A-225 4x' GTAAAGGTGCATG-CGAGATGTCGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ACGCGTCGGGACGACCGGCGGGAGTAATATCCCGCGGGG-TGTCTCGATCGCG-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCATCCCTTGCGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTGCGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTGCCAGATCGCGCC-AACGACGACCCCA- 'Larrea tridentata var. arenaria CA07-A-226 4x' GTAAAGGTGCATG-CGAGATGTCGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAAAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCCCACGCGTCGGGACGACCGGCGGGAGTAATATCCCGCGGGG-TGTCTCGATCGCG-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCACCCCTTGTGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTACGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTACCAGAACGTGCC-AACGACGACCCCA- 'Larrea tridentata TX07-B-305 2x' GTAAAGGTGCATG-CGAGATCTCGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ACGCGTCGGGACGACCGGCGGGAGTAATATCCCGCGGGG-TGTCTCGATCGCG-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCACCCCTTGTGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTACGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTACCAGATCGTGCC-AACGACGACCCCA- 'Larrea tridentata AZ07-V-417 6x' GTAAAGGTGCATG-CGAGATCTCGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAA-CCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ACGCGTCGGGACGACCGGCGGGAGTAATATCCCGCGGGG-TGTCTCGATCGCA-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCACCCCTTGCGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTGCGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTGCCAGATCGCGCC-AACGACGACCCCA- 'Larrea tridentata CA07-E-474 6x' GTAAAGGTGCATG-CGAGATCTCGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ACGCGTCGGGACGACCGGCGGGAGTAATATCCCGCGGGG-TGTCTCGATCGCG-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCACCCCTTGCGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTGCGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTGCCAGATCGCGCC-AACGACGACCCCA- 'Larrea tridentata CA07-F-477 4x' GTAAAGGTGCATG-CGAGATCTCGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ACGCGTCGGGACGACCGGCGGGAGTAATATCCCGCGGGG-TGTCTCGATCGCG-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCATCCCTTGCGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTGCGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTGCCAGATCGCGCC-AACGACGACCCCA- Larrea_tridentata_CUATR02_2x GTAAAGGTGCATG-CGAGATCTCGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ATGCGTCGGGACGACCGGCGGGAGTAATGTCCCGCGGGG-TGTCTCGATCGTG-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCACCCCTTGTGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTACGACTCCGCCCGTTCAGAGGCACTCACGACCCGCGGTACCAGATCGTGCC-AACGACGACCCCA- 'Larrea tridentata NM07-F-284 2x' GTAAAGGTGCATG-CGAGATCTCGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ATGCGTCGGGACGATCGGCGGGAGTAATGTCCCGCAGGGGTGTCTCGATCGCG-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCATCCCTTGTGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTGCGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTGCCAGATCGTGCC-AACGACGACCCCA- 'Larrea tridentata AZ07-K-265 2x' GTAAAGGTGCATG-TGAGATCCGGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCG-TGCGTGGCGTCAAAGAGGAATGCTACCTGGTTGATCCTGCCAGTACTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ACGCGTCGGGACGACCGGCGGGAGTAATATCCCGCAGGG-TGTCTCGATCGCG-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCTCACCCCTTGTGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTACGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTACCAGATCGTGCC-AACGACGACCCCA- 'Larrea tridentata AZ07-X-444 6x' GTAAAGGTGCATG-CGAGATCTCGGTGTCCCG-ATAAG-GGGCACAGGGTGGACCTCGTAGTAGCCCTTGTGATCCACGCATGCCTCACCCCACGT-GGGTGTTGCTGCCACGGCTCACGGGTGCCTTGCTCGGTCTCTAG---TGGGGTGCTTCCCCCTATCGCCCGAACGATGGCGCTAGTCGCCT-GTCCCGAA-CGACGTCCTCGACCGTTTTGGCACGTTCGATCTTCTCGGTCGACGG-ATCATGCGGTGCGTGGCGTCAGAGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAGTCGAAACCTGCACAA-GCAGAACGACCCGCGGACCTGTTGTTAAACCCGGGGGACGGGGCGAGCGGAGCTAGCCCTCTACCCC-ACGCGTCGGGACGACCGGCGGGAGTAATATCCCGCGGGG-TGTCTCGATCGCG-TCACGAACCCACGGCGCGGAATGCGCCAAGGAATCCT-AATCGAAAGACCGCGCTCGCGCGGCC-TCTTTGAGAATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGGCCAAGGGCACGTCTGCCTGGGTGTCACGCAACGTCGCTCCCTCCCATCCCTTGCGGGAACGGGGAGGGAGCGGAATATGGCCTCCCGTGTGCTCCCGCTCACGGTTGGCCCAAACACGAGTCCTCGGTGCGG-TGCGCGCCACGGCTTGCGGTGGTTGAAACGACCCTTGCTTCAAAGCCGTGCGTGCGACCCCGCCCGTTCAGAGGCACTCACGACCCGCGGTGCCAGATCGCGCC-AACGACGACCCCA- ; END; BEGIN TREES; Title Laport2011ETSITStree; LINK Taxa = Taxa; TRANSLATE 1 Guaiacum_coulteri, 2 Larrea_nitida_RSABG01, 3 Larrea_nitida_VANDENITID, 4 Larrea_cuneifolia, 5 Larrea_divaricata, 6 'Larrea tridentata AZ07-A-212 4x', 7 'Larrea tridentata SN07-B-04 4x', 8 'Larrea tridentata var. arenaria CA07-A-225 4x', 9 'Larrea tridentata var. arenaria CA07-A-226 4x', 10 'Larrea tridentata TX07-B-305 2x', 11 'Larrea tridentata AZ07-V-417 6x', 12 'Larrea tridentata CA07-E-474 6x', 13 'Larrea tridentata CA07-F-477 4x', 14 Larrea_tridentata_CUATR02_2x, 15 'Larrea tridentata NM07-F-284 2x', 16 'Larrea tridentata AZ07-K-265 2x', 17 'Larrea tridentata AZ07-X-444 6x'; TREE PAUP_1 = (1,((2,3),(4,(5,((((6,7,8),13,17),((((9,16),10),14),15),12),11))))); TREE PAUP_2 = (1,((2,3),(4,(5,(6,(7,8,((((((9,16),10),14),15),11,12),13,17))))))); TREE PAUP_3 = (1,((2,3),(4,(5,((6,(7,8,((((((9,16),10),14),15),12),13,17))),11))))); TREE PAUP_4 = (1,((2,3),(4,(5,(((((6,7,8),13,17),((((9,16),10),14),15)),12),11))))); TREE PAUP_5 = (1,((2,3),(4,(5,(((6,(7,8,(13,17))),(((((9,16),10),14),15),12)),11))))); TREE PAUP_6 = (1,((2,3),(4,(5,((6,(7,8,(13,17))),((((((9,16),10),14),15),12),11)))))); TREE PAUP_7 = (1,((2,3),(4,(5,(((6,(7,8,(13,17))),((((9,16),10),14),15),12),11))))); TREE PAUP_8 = (1,((2,3),(4,(5,(((6,(7,8)),((((9,16),10),14),15),12,(13,17)),11))))); TREE PAUP_9 = (1,((2,3),(4,(5,(((6,(7,8)),(((((9,16),10),14),15),12,(13,17))),11))))); TREE PAUP_10 = (1,((2,3),(4,(5,((6,(7,8)),((((((9,16),10),14),15),12,(13,17)),11)))))); TREE PAUP_11 = (1,((2,3),(4,(5,((((6,7,8),((((9,16),10),14),15),13,17),12),11))))); TREE PAUP_12 = (1,((2,3),(4,(5,((((6,7,8),13,17),(((9,16),10),(14,15)),12),11))))); TREE PAUP_13 = (1,((2,3),(4,(5,((((6,7,8),13,17),((9,16),10,(14,15)),12),11))))); TREE PAUP_14 = (1,((2,3),(4,(5,((((6,(7,8)),(13,17)),((((9,16),10),14),15),12),11))))); TREE PAUP_15 = (1,((2,3),(4,(5,(((6,((7,8),(13,17))),(((((9,16),10),14),15),12)),11))))); TREE PAUP_16 = (1,((2,3),(4,(5,((6,((7,8),(13,17)),(((((9,16),10),14),15),12)),11))))); TREE PAUP_17 = (1,((2,3),(4,(5,((6,(((7,8),(13,17)),(((((9,16),10),14),15),12))),11))))); TREE PAUP_18 = (1,((2,3),(4,(5,(6,((((7,8),13,17),((((9,16),10),14),15),12),11)))))); TREE PAUP_19 = (1,((2,3),(4,(5,((6,((7,8),13,17),((((9,16),10),14),15),12),11))))); TREE PAUP_20 = (1,((2,3),(4,(5,((((6,7,8),13,17),(((9,16),10,14),15),12),11))))); TREE PAUP_21 = (1,((2,3),(4,(5,(6,(((7,8),13,17),((((9,16),10),14),15),11,12)))))); TREE PAUP_22 = (1,((2,3),(4,(5,(6,(7,8),(((((9,16),10),14),15),11,12,(13,17))))))); TREE PAUP_23 = (1,((2,3),(4,(5,(6,(((7,8),(13,17)),(((((9,16),10),14),15),11,12))))))); TREE PAUP_24 = (1,((2,3),(4,(5,(6,((7,8),((((((9,16),10),14),15),11,12),(13,17)))))))); TREE PAUP_25 = (1,((2,3),(4,(5,(6,(7,8,((((((9,16),10),14),15),(11,12)),13,17))))))); TREE PAUP_26 = (1,((2,3),(4,(5,(6,((7,8),((((((9,16),10),14),15),(11,12)),(13,17)))))))); TREE PAUP_27 = (1,((2,3),(4,(5,(6,(7,8,(13,17)),(((((9,16),10),14),15),11,12)))))); TREE PAUP_28 = (1,((2,3),(4,(5,(6,(7,8,(((((9,16),10),14),15),(11,12),13,17))))))); TREE PAUP_29 = (1,((2,3),(4,(5,(6,(7,8,(((((9,16),10),(14,15)),11,12),13,17))))))); TREE PAUP_30 = (1,((2,3),(4,(5,(6,(7,8,((((9,16),10,(14,15)),11,12),13,17))))))); TREE PAUP_31 = (1,((2,3),(4,(5,(6,(7,8,(((((9,16),10,14),15),11,12),13,17))))))); TREE PAUP_32 = (1,((2,3),(4,(5,((6,(((7,8),13,17),((((9,16),10),14),15),12)),11))))); TREE PAUP_33 = (1,((2,3),(4,(5,((6,((((7,8),13,17),((((9,16),10),14),15)),12)),11))))); TREE PAUP_34 = (1,((2,3),(4,(5,((6,((7,8),((((((9,16),10),14),15),12),(13,17)))),11))))); TREE PAUP_35 = (1,((2,3),(4,(5,((6,(7,8,(((((9,16),10),14),15),12,13,17))),11))))); TREE PAUP_36 = (1,((2,3),(4,(5,((6,(7,8),(((((9,16),10),14),15),12,(13,17))),11))))); TREE PAUP_37 = (1,((2,3),(4,(5,((6,((7,8),((((((9,16),10),14),15),(13,17)),12))),11))))); TREE PAUP_38 = (1,((2,3),(4,(5,((6,((7,8),(((((9,16),10),14),15),12,(13,17)))),11))))); TREE PAUP_39 = (1,((2,3),(4,(5,((6,(7,8),((((((9,16),10),14),15),(13,17)),12)),11))))); TREE PAUP_40 = (1,((2,3),(4,(5,(((6,(7,8)),((((((9,16),10),14),15),(13,17)),12)),11))))); TREE PAUP_41 = (1,((2,3),(4,(5,((6,(7,8,(13,17)),(((((9,16),10),14),15),12)),11))))); TREE PAUP_42 = (1,((2,3),(4,(5,((6,(7,8,(((((9,16),10),14),15),13,17)),12),11))))); TREE PAUP_43 = (1,((2,3),(4,(5,((6,(7,8,((((9,16),10,(14,15)),12),13,17))),11))))); TREE PAUP_44 = (1,((2,3),(4,(5,((6,(7,8,(((((9,16),10),(14,15)),12),13,17))),11))))); TREE PAUP_45 = (1,((2,3),(4,(5,((6,(7,8,(((((9,16),10,14),15),12),13,17))),11))))); TREE PAUP_46 = (1,((2,3),(4,(5,(6,(((((7,8),13,17),((((9,16),10),14),15)),12),11)))))); TREE PAUP_47 = (1,((2,3),(4,(5,((6,(7,8)),(((((((9,16),10),14),15),(13,17)),12),11)))))); TREE PAUP_48 = (1,((2,3),(4,(5,(((6,(7,8,(((((9,16),10),14),15),13,17))),12),11))))); TREE PAUP_49 = (1,((2,3),(4,(5,((6,(7,8,(((((9,16),10),14),15),13,17))),(11,12)))))); TREE PAUP_50 = (1,((2,3),(4,(5,((((6,(7,8)),((((9,16),10),14),15),(13,17)),12),11))))); TREE PAUP_51 = (1,((2,3),(4,(5,((((6,(7,8)),(((((9,16),10),14),15),(13,17))),12),11))))); TREE PAUP_52 = (1,((2,3),(4,(5,(((6,(7,8)),(((((9,16),10),14),15),(13,17)),12),11))))); TREE PAUP_53 = (1,((2,3),(4,(5,(((6,((7,8),(13,17))),((((9,16),10),14),15),12),11))))); TREE PAUP_54 = (1,((2,3),(4,(5,((6,(((7,8),13,17),((((9,16),10),14),15)),12),11))))); TREE PAUP_55 = (1,((2,3),(4,(5,(((((6,(7,8)),(13,17)),((((9,16),10),14),15)),12),11))))); TREE PAUP_56 = (1,((2,3),(4,(5,(((((6,7,8),13,17),(((9,16),10,14),15)),12),11))))); TREE PAUP_57 = (1,((2,3),(4,(5,(((6,((7,8),(13,17))),(((9,16),10),(14,15)),12),11))))); TREE PAUP_58 = (1,((2,3),(4,(5,(((6,((7,8),(13,17))),(((9,16),10,(14,15)),12)),11))))); TREE PAUP_59 = (1,((2,3),(4,(5,(((6,((7,8),(((((9,16),10),14),15),13,17))),12),11))))); TREE PAUP_60 = (1,((2,3),(4,(5,((6,((7,8),((((9,16),10),14),15),13,17),12),11))))); TREE PAUP_61 = (1,((2,3),(4,(5,((6,((7,8),13,17),(((9,16),10),(14,15)),12),11))))); TREE PAUP_62 = (1,((2,3),(4,(5,(((6,((7,8),(13,17))),((9,16),10,(14,15)),12),11))))); TREE PAUP_63 = (1,((2,3),(4,(5,((6,((7,8),13,17),((9,16),10,(14,15)),12),11))))); TREE PAUP_64 = (1,((2,3),(4,(5,(((6,((7,8),(13,17))),((((9,16),10),(14,15)),12)),11))))); TREE PAUP_65 = (1,((2,3),(4,(5,(((6,((7,8),(13,17))),((((9,16),10,14),15),12)),11))))); TREE PAUP_66 = (1,((2,3),(4,(5,(6,(7,8,(13,17)),((((9,16),10),(14,15)),11,12)))))); TREE PAUP_67 = (1,((2,3),(4,(5,((6,(7,8,(13,17))),((((9,16),10,(14,15)),12),11)))))); TREE PAUP_68 = (1,((2,3),(4,(5,(6,(7,8,(13,17)),(((9,16),10,(14,15)),11,12)))))); TREE PAUP_69 = (1,((2,3),(4,(5,((6,(7,8,(13,17))),(((((9,16),10),(14,15)),12),11)))))); TREE PAUP_70 = (1,((2,3),(4,(5,((6,(7,8,(13,17))),(((((9,16),10,14),15),12),11)))))); TREE PAUP_71 = (1,((2,3),(4,(5,(((6,(7,8,(13,17))),((((9,16),10),(14,15)),12)),11))))); TREE PAUP_72 = (1,((2,3),(4,(5,(((6,(7,8,(13,17))),(((9,16),10),(14,15)),12),11))))); TREE PAUP_73 = (1,((2,3),(4,(5,(((6,(7,8,(13,17))),((9,16),10,(14,15)),12),11))))); TREE PAUP_74 = (1,((2,3),(4,(5,(((6,(7,8,(13,17))),(((9,16),10,(14,15)),12)),11))))); TREE PAUP_75 = (1,((2,3),(4,(5,(((6,(7,8,(13,17))),(((9,16),10,14),15),12),11))))); TREE PAUP_76 = (1,((2,3),(4,(5,((((6,(7,8)),(13,17)),(((9,16),10),(14,15)),12),11))))); TREE PAUP_77 = (1,((2,3),(4,(5,((((6,(7,8)),(13,17)),((9,16),10,(14,15)),12),11))))); TREE PAUP_78 = (1,((2,3),(4,(5,((((6,(7,8)),(((((9,16),10),14),15),13,17)),12),11))))); TREE PAUP_79 = (1,((2,3),(4,(5,(((6,(7,8)),(((9,16),10),(14,15)),12,(13,17)),11))))); TREE PAUP_80 = (1,((2,3),(4,(5,(((6,(7,8)),((9,16),10,(14,15)),12,(13,17)),11))))); TREE PAUP_81 = (1,((2,3),(4,(5,((((6,(7,8)),(13,17)),(((9,16),10,14),15),12),11))))); TREE PAUP_82 = (1,((2,3),(4,(5,((6,(((7,8),(((((9,16),10),14),15),13,17)),12)),11))))); TREE PAUP_83 = (1,((2,3),(4,(5,((6,(((7,8),((((9,16),10),14),15),13,17),12)),11))))); TREE PAUP_84 = (1,((2,3),(4,(5,(6,(7,8),((((((9,16),10),14),15),(13,17)),11,12)))))); TREE PAUP_85 = (1,((2,3),(4,(5,(((6,(7,8)),(((((9,16),10),14),15),13,17),12),11))))); TREE PAUP_86 = (1,((2,3),(4,(5,(((6,(7,8)),((((9,16),10),(14,15)),12,(13,17))),11))))); TREE PAUP_87 = (1,((2,3),(4,(5,(((6,(7,8)),(((9,16),10,(14,15)),12,(13,17))),11))))); TREE PAUP_88 = (1,((2,3),(4,(5,(((6,(7,8)),((((((9,16),10),14),15),13,17),12)),11))))); TREE PAUP_89 = (1,((2,3),(4,(5,(((6,(7,8)),(((((9,16),10,14),15),(13,17)),12)),11))))); TREE PAUP_90 = (1,((2,3),(4,(5,((6,(7,8)),(((((((9,16),10),14),15),13,17),12),11)))))); TREE PAUP_91 = (1,((2,3),(4,(5,((6,(7,8)),(((((9,16),10),(14,15)),12,(13,17)),11)))))); TREE PAUP_92 = (1,((2,3),(4,(5,((6,(7,8)),((((9,16),10,(14,15)),12,(13,17)),11)))))); TREE PAUP_93 = (1,((2,3),(4,(5,(6,(7,8),((((9,16),10),(14,15)),11,12,(13,17))))))); TREE PAUP_94 = (1,((2,3),(4,(5,(6,(7,8),(((9,16),10,(14,15)),11,12,(13,17))))))); TREE PAUP_95 = (1,((2,3),(4,(5,((6,(7,8)),(((((9,16),10,14),15),12,(13,17)),11)))))); TREE PAUP_96 = (1,((2,3),(4,(5,((((6,7,8),(((9,16),10,14),15),13,17),12),11))))); TREE PAUP_97 = (1,((2,3),(4,(5,(6,((((7,8),((((9,16),10),14),15),13,17),12),11)))))); TREE PAUP_98 = (1,((2,3),(4,(5,((6,(((7,8),13,17),(((9,16),10),(14,15)),12)),11))))); TREE PAUP_99 = (1,((2,3),(4,(5,(6,((((7,8),13,17),(((9,16),10),(14,15)),12),11)))))); TREE PAUP_100 = (1,((2,3),(4,(5,((6,(((7,8),13,17),((9,16),10,(14,15)),12)),11))))); TREE PAUP_101 = (1,((2,3),(4,(5,(6,((((7,8),13,17),((9,16),10,(14,15)),12),11)))))); TREE PAUP_102 = (1,((2,3),(4,(5,((6,(((7,8),(13,17)),(((9,16),10,(14,15)),12))),11))))); TREE PAUP_103 = (1,((2,3),(4,(5,((6,(((7,8),(13,17)),((((9,16),10),(14,15)),12))),11))))); TREE PAUP_104 = (1,((2,3),(4,(5,((6,(((7,8),(13,17)),((((9,16),10,14),15),12))),11))))); TREE PAUP_105 = (1,((2,3),(4,(5,(6,((((7,8),13,17),((((9,16),10),14),15)),11,12)))))); TREE PAUP_106 = (1,((2,3),(4,(5,(6,(((7,8),((((9,16),10),14),15),13,17),11,12)))))); TREE PAUP_107 = (1,((2,3),(4,(5,(6,(((7,8),(((((9,16),10),14),15),13,17)),(11,12))))))); TREE PAUP_108 = (1,((2,3),(4,(5,(6,(7,8,(((((9,16),10),14),15),13,17)),(11,12)))))); TREE PAUP_109 = (1,((2,3),(4,(5,(6,(((7,8),13,17),(((9,16),10),(14,15)),11,12)))))); TREE PAUP_110 = (1,((2,3),(4,(5,(6,(((7,8),13,17),((9,16),10,(14,15)),11,12)))))); TREE PAUP_111 = (1,((2,3),(4,(5,(6,(((((7,8),13,17),(((9,16),10,14),15)),12),11)))))); TREE PAUP_112 = (1,((2,3),(4,(5,((6,((7,8),13,17),(((9,16),10,14),15),12),11))))); TREE PAUP_113 = (1,((2,3),(4,(5,(((6,((7,8),(13,17))),(((9,16),10,14),15),12),11))))); TREE PAUP_114 = (1,((2,3),(4,(5,((((6,(7,8)),((((9,16),10,14),15),13,17)),12),11))))); TREE PAUP_115 = (1,((2,3),(4,(5,(((6,((7,8),((((9,16),10,14),15),13,17))),12),11))))); TREE PAUP_116 = (1,((2,3),(4,(5,((6,(7,8,((((9,16),10,14),15),13,17))),(11,12)))))); TREE PAUP_117 = (1,((2,3),(4,(5,(((((6,(7,8)),(13,17)),(((9,16),10,14),15)),12),11))))); TREE PAUP_118 = (1,((2,3),(4,(5,((((6,(7,8)),(((9,16),10,14),15),(13,17)),12),11))))); TREE PAUP_119 = (1,((2,3),(4,(5,((((6,(7,8)),((((9,16),10,14),15),(13,17))),12),11))))); TREE PAUP_120 = (1,((2,3),(4,(5,(((6,(7,8)),((((9,16),10,14),15),(13,17)),12),11))))); TREE PAUP_121 = (1,((2,3),(4,(5,((6,(7,8)),((((((9,16),10,14),15),(13,17)),12),11)))))); TREE PAUP_122 = (1,((2,3),(4,(5,((6,(((7,8),13,17),(((9,16),10,14),15)),12),11))))); TREE PAUP_123 = (1,((2,3),(4,(5,((6,((((7,8),13,17),(((9,16),10,14),15)),12)),11))))); TREE PAUP_124 = (1,((2,3),(4,(5,(6,(7,8,(((((9,16),10,14),15),(11,12)),13,17))))))); TREE PAUP_125 = (1,((2,3),(4,(5,(6,((((7,8),13,17),(((9,16),10,14),15),12),11)))))); TREE PAUP_126 = (1,((2,3),(4,(5,(6,(7,8),((((((9,16),10),14),15),13,17),11,12)))))); TREE PAUP_127 = (1,((2,3),(4,(5,(6,(7,8),((((9,16),10,14),15),11,12,(13,17))))))); TREE PAUP_128 = (1,((2,3),(4,(5,(6,(((7,8),(13,17)),((((9,16),10),(14,15)),11,12))))))); TREE PAUP_129 = (1,((2,3),(4,(5,(6,(((7,8),(13,17)),(((9,16),10,(14,15)),11,12))))))); TREE PAUP_130 = (1,((2,3),(4,(5,(6,(((7,8),(13,17)),((((9,16),10,14),15),11,12))))))); TREE PAUP_131 = (1,((2,3),(4,(5,(6,((7,8),((((((9,16),10),14),15),(13,17)),(11,12)))))))); TREE PAUP_132 = (1,((2,3),(4,(5,(6,((7,8),(((((9,16),10),14),15),(11,12),(13,17)))))))); TREE PAUP_133 = (1,((2,3),(4,(5,(6,((7,8),(((((9,16),10),(14,15)),11,12),(13,17)))))))); TREE PAUP_134 = (1,((2,3),(4,(5,(6,((7,8),((((9,16),10,(14,15)),11,12),(13,17)))))))); TREE PAUP_135 = (1,((2,3),(4,(5,(6,((7,8),((((((9,16),10),14),15),13,17),(11,12)))))))); TREE PAUP_136 = (1,((2,3),(4,(5,(6,((7,8),(((((9,16),10,14),15),11,12),(13,17)))))))); TREE PAUP_137 = (1,((2,3),(4,(5,(6,((7,8),(((((9,16),10,14),15),(11,12)),(13,17)))))))); TREE PAUP_138 = (1,((2,3),(4,(5,(6,(7,8,((((9,16),10,14),15),(11,12),13,17))))))); TREE PAUP_139 = (1,((2,3),(4,(5,(6,(7,8,(13,17)),((((9,16),10,14),15),11,12)))))); TREE PAUP_140 = (1,((2,3),(4,(5,(6,(((7,8),13,17),(((9,16),10,14),15),11,12)))))); TREE PAUP_141 = (1,((2,3),(4,(5,((6,((7,8),(((((9,16),10),14),15),13,17)),12),11))))); TREE PAUP_142 = (1,((2,3),(4,(5,((6,((7,8),((((((9,16),10),14),15),13,17),12))),11))))); TREE PAUP_143 = (1,((2,3),(4,(5,((6,(7,8),((((9,16),10),(14,15)),12,(13,17))),11))))); TREE PAUP_144 = (1,((2,3),(4,(5,((6,((7,8),((((9,16),10,(14,15)),12),(13,17)))),11))))); TREE PAUP_145 = (1,((2,3),(4,(5,((6,(7,8),(((9,16),10,(14,15)),12,(13,17))),11))))); TREE PAUP_146 = (1,((2,3),(4,(5,((6,((7,8),(((((9,16),10),(14,15)),12),(13,17)))),11))))); TREE PAUP_147 = (1,((2,3),(4,(5,((6,((7,8),(((((9,16),10,14),15),12),(13,17)))),11))))); TREE PAUP_148 = (1,((2,3),(4,(5,((6,(7,8),((((((9,16),10),14),15),13,17),12)),11))))); TREE PAUP_149 = (1,((2,3),(4,(5,((6,(7,8),(((((9,16),10,14),15),(13,17)),12)),11))))); TREE PAUP_150 = (1,((2,3),(4,(5,((6,((7,8),(((((9,16),10,14),15),(13,17)),12))),11))))); TREE PAUP_151 = (1,((2,3),(4,(5,(((6,(7,8,(13,17))),((((9,16),10,14),15),12)),11))))); TREE PAUP_152 = (1,((2,3),(4,(5,((6,(7,8,((((9,16),10,14),15),13,17)),12),11))))); TREE PAUP_153 = (1,((2,3),(4,(5,((6,(7,8,(13,17)),((((9,16),10),(14,15)),12)),11))))); TREE PAUP_154 = (1,((2,3),(4,(5,((6,(7,8,(13,17)),(((9,16),10,(14,15)),12)),11))))); TREE PAUP_155 = (1,((2,3),(4,(5,(((6,(7,8,((((9,16),10,14),15),13,17))),12),11))))); TREE PAUP_156 = (1,((2,3),(4,(5,((6,((7,8),(13,17)),((((9,16),10),(14,15)),12)),11))))); TREE PAUP_157 = (1,((2,3),(4,(5,((6,((7,8),(13,17)),(((9,16),10,(14,15)),12)),11))))); TREE PAUP_158 = (1,((2,3),(4,(5,((6,((7,8),(((9,16),10,14),15),13,17),12),11))))); TREE PAUP_159 = (1,((2,3),(4,(5,((6,(((7,8),13,17),(((9,16),10,14),15),12)),11))))); TREE PAUP_160 = (1,((2,3),(4,(5,((6,(7,8,(13,17)),((((9,16),10,14),15),12)),11))))); TREE PAUP_161 = (1,((2,3),(4,(5,((6,((7,8),(13,17)),((((9,16),10,14),15),12)),11))))); TREE PAUP_162 = (1,((2,3),(4,(5,(((6,(7,8)),((((9,16),10,14),15),12,(13,17))),11))))); TREE PAUP_163 = (1,((2,3),(4,(5,(((6,(7,8)),(((9,16),10,14),15),12,(13,17)),11))))); TREE PAUP_164 = (1,((2,3),(4,(5,((6,(7,8),((((9,16),10,14),15),12,(13,17))),11))))); TREE PAUP_165 = (1,((2,3),(4,(5,((6,(((7,8),((((9,16),10,14),15),13,17)),12)),11))))); TREE PAUP_166 = (1,((2,3),(4,(5,((6,(((7,8),(((9,16),10,14),15),13,17),12)),11))))); TREE PAUP_167 = (1,((2,3),(4,(5,(6,(7,8),(((((9,16),10,14),15),(13,17)),11,12)))))); TREE PAUP_168 = (1,((2,3),(4,(5,(((6,(7,8)),(((((9,16),10,14),15),13,17),12)),11))))); TREE PAUP_169 = (1,((2,3),(4,(5,(((6,(7,8)),((((9,16),10,14),15),13,17),12),11))))); TREE PAUP_170 = (1,((2,3),(4,(5,((6,(7,8,((((9,16),10,14),15),12,13,17))),11))))); TREE PAUP_171 = (1,((2,3),(4,(5,((6,((7,8),((((9,16),10,14),15),12,(13,17)))),11))))); TREE PAUP_172 = (1,((2,3),(4,(5,((6,(7,8)),((((((9,16),10,14),15),13,17),12),11)))))); TREE PAUP_173 = (1,((2,3),(4,(5,(6,((((7,8),(((9,16),10,14),15),13,17),12),11)))))); TREE PAUP_174 = (1,((2,3),(4,(5,(6,((((7,8),13,17),(((9,16),10,14),15)),11,12)))))); TREE PAUP_175 = (1,((2,3),(4,(5,(6,(((7,8),((((9,16),10,14),15),13,17)),(11,12))))))); TREE PAUP_176 = (1,((2,3),(4,(5,(6,(((7,8),(((9,16),10,14),15),13,17),11,12)))))); TREE PAUP_177 = (1,((2,3),(4,(5,(6,(7,8,((((9,16),10,14),15),13,17)),(11,12)))))); TREE PAUP_178 = (1,((2,3),(4,(5,((6,((7,8),((((9,16),10,14),15),13,17)),12),11))))); TREE PAUP_179 = (1,((2,3),(4,(5,(6,((7,8),(((((9,16),10,14),15),(13,17)),(11,12)))))))); TREE PAUP_180 = (1,((2,3),(4,(5,(6,((7,8),(((((9,16),10,14),15),13,17),(11,12)))))))); TREE PAUP_181 = (1,((2,3),(4,(5,((6,((7,8),(((((9,16),10,14),15),13,17),12))),11))))); TREE PAUP_182 = (1,((2,3),(4,(5,(6,(7,8),(((((9,16),10,14),15),13,17),11,12)))))); TREE PAUP_183 = (1,((2,3),(4,(5,(6,((7,8),((((9,16),10,14),15),(11,12),(13,17)))))))); TREE PAUP_184 = (1,((2,3),(4,(5,((6,(7,8),(((((9,16),10,14),15),13,17),12)),11))))); END; BEGIN SETS; CHARSET ITS = 587 - 946; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 946; � END; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1305322710346; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 715081684265437802; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2952502793879710796; mqVersion 274; checksumv 0 2 415319771 null getNumChars 949 numChars 949 getNumTaxa 17 numTaxa 17 short true bits 15 states 15 sumSquaresStatesOnly 289731.0 sumSquares 289731.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #715081684265437802 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #715081684265437802; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 229; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2952502793879710796 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #2952502793879710796 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; newAssistant #mesquite.lists.CharListCodonPos.CharListCodonPos; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; END; BEGIN CODONS; CODONPOSSET * UNTITLED = N: 1- 946 ; CODONPOSSET CodonPositions = N: 1- 946 ; CODESET * UNTITLED = universal: 1 - 946; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 946; END; BEGIN MacClade; Version 4.0 87; LastModified -906579115; FileSettings editor '0' '0' '1' '1'; Singles 000; Editor 00011001111111100100010010 '1' '12' Geneva '9' '100' '1' all; EditorPosition '85' '8' '387' '1251'; TreeWindowPosition '46' '6' '743' '1230'; ListWindow Characters closed Geneva '9' '50' '10' '129' '399' 000; ListWindow Taxa closed Geneva '9' '50' '10' '129' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490'; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490'; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ChartWindowPosition '52' '30' '718' '1220'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols & / 00 ? -; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '2'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '609' '46' '115' '165'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' ( normal ) 0010; NexusOptions '0' '0' '50' 001011011; TipLabel '1'; TreeFont Geneva '9' ( normal ); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' ( normal ) Geneva '10' ( normal ) Geneva '9' ( normal ) Geneva '9' ( normal ) Geneva '9' ( bold ) Geneva '9' ( normal ) Geneva '9' ( normal ) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '-24453' '-18824' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END; BEGIN mrbayes; SET AUTOCLOSE = YES; outgroup GUAIA; Prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset nst = 6 rates = gamma; mcmc ngen = 10000000 printfreq = 1 samplefreq = 10000 nchains = 4 savebrlens = yes filename = dist_ETSITS; END; BEGIN TREES; Title Laport2011ETSITSbootstrap; LINK Taxa = Taxa; TRANSLATE 1 Guaiacum_coulteri, 2 Larrea_nitida_RSABG01, 3 Larrea_nitida_VANDENITID, 4 Larrea_cuneifolia, 5 Larrea_divaricata, 6 'Larrea tridentata AZ07-A-212 4x', 7 'Larrea tridentata SN07-B-04 4x', 8 'Larrea tridentata var. arenaria CA07-A-225 4x', 9 'Larrea tridentata var. arenaria CA07-A-226 4x', 10 'Larrea tridentata TX07-B-305 2x', 11 'Larrea tridentata AZ07-V-417 6x', 12 'Larrea tridentata CA07-E-474 6x', 13 'Larrea tridentata CA07-F-477 4x', 14 Larrea_tridentata_CUATR02_2x, 15 'Larrea tridentata NM07-F-284 2x', 16 'Larrea tridentata AZ07-K-265 2x', 17 'Larrea tridentata AZ07-X-444 6x'; TREE PAUP_1 = (1:100.0,(2:100.0,3:100.0):100.0,(4:100.0,(5:100.0,(6:100.0,7:100.0,8:100.0,(((9:100.0,16:100.0):58.0,10:100.0,14:100.0):51.227097,15:100.0):73.398071,11:100.0,12:100.0,13:100.0,17:100.0):65.718689):90.260872):100.0); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1305582843233; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2643575413670052776; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3816934972806290740; mqVersion 274; checksumv 0 2 1144503489 null getNumChars 946 numChars 946 getNumTaxa 17 numTaxa 17 short true bits 15 states 15 sumSquaresStatesOnly 294811.0 sumSquares 294811.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 652; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2643575413670052776 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 864.1305579774905.6031625767943391063; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 585; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #2643575413670052776 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; toggleUseWeights off; endTell; setAssignedID 1353.1305582741772.1952547143185539687; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 585; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths on; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3816934972806290740 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 585; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;