#NEXUS 

Begin trees;  [Treefile saved onsdag 10 augusti 2011  16.46]
[!
>Data file = Cainiella_ITS.nex
>Heuristic search settings:
>  Optimality criterion = parsimony
>    Character-status summary:
>      435 characters are excluded
>      Of the remaining 157 included characters:
>        All characters are of type 'unord'
>        All characters have equal weight
>        All characters are parsimony-informative
>    Gaps are treated as "missing"
>  Starting tree(s) obtained via stepwise addition
>  Addition sequence: random
>    Number of replicates = 10000
>    Starting seed = 1572145014
>    Random trees (not just addition sequence) used as starting point
>  Number of trees held at each step during stepwise addition = 1
>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
>  Steepest descent option not in effect
>  Initial 'MaxTrees' setting = 100 (will be auto-increased by 100)
>  Branches collapsed (creating polytomies) if maximum branch length is zero
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>Heuristic search completed
>   Total number of rearrangements tried = 162799469
>   Score of best tree(s) found = 437
>   Number of trees retained = 1
>   Time used = 00:02:10.9
]
	Translate
		1 Chapeckia_nigrosa_AR3809,
		2 Kruys725ITS,
		3 Kruys727ITS,
		4 Cryptodiaporthe_galericulata_ar3890its,
		5 Cryptodiaporthe_galericulata_AR4004its,
		6 Cryptodiaporthe_galericulata_JF681969,
		7 Cryptodiaporthe_galericulata_ar4027its,
		8 Diaporthe_eres_DQ491514,
		9 Diaporthe_phaseolorum_AF001021,
		10 Gnomonia_rostellata_ar3727its,
		11 Gnomonia_rostellata_ar3533its,
		12 Gnomonia_rostellata_ar3987its,
		13 Gnomonia_fragariae_CBS146.65_EF212844,
		14 Gnomonia_fragariae_EF212843,
		15 Gnomonia_fragariae_EF212842,
		16 Gnomonia_rubi_CBS102.72_EF212847,
		17 Gnomonia_rubi_CBS850.79_EF212846,
		18 Hapalocystis_berkeleyi_AR3870its,
		19 Leucostoma_massarianum_AY347338,
		20 Prosthecium_acerinum_EU039968,
		21 Prosthecium_ellipsosporum,
		22 Prosthecium_innesii_ar3831its,
		23 Prosthecium_innesii_ar3639its,
		24 Prosthecium_innesii_ar3925its,
		25 Sillia_ferruginea_ar3440its,
		26 Sydowiella_fenestrans_AR3777,
		27 Valsa_ambiens_AY347330,
		28 Winterella_aurantiaca_AR4022its
		;
tree PAUP_1 = [&U] (1,((((2,(((((10,11,12,16),17),((13,14,15),18)),(25,28)),(22,(23,24)))),3),(4,5,6,7)),((((8,9),(19,27)),(20,21)),26)));
End;