#NEXUS [written Mon May 23 10:49:02 JST 2011 by Mesquite version 2.74 (build 550) at tc64192.kahaku.go.jp/202.220.64.192] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=19; TAXLABELS Osmunda_regalis_R1_R2_R3_R4 Osmunda_regalis_R5 Osmunda_regalis_R6 Osmunda_regalis_R7 Osmunda_regalis_R8_R9 Osmunda_regalis_R10 Osmunda_regalis_R11_R12 Osmunda_regalis_R13 Osmunda_regalis_R14_R15_R16_R17_R18 Osmunda_japonica_J1J6J7_J8 Osmunda_japonica_J2_J3_J4_J5 Osmunda_hybrida_H245C Osmunda_lancea_L1 Osmunda_lancea_L2_L3 Osmunda_hybrida_H245A Osmunda_hybrida_H245B Osmunda_hybrida_H245D Osmunda_hybrida_H245E Osmunda_claytoniana ; END; BEGIN CHARACTERS; TITLE L245; DIMENSIONS NCHAR=303; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Osmunda_regalis_R1_R2_R3_R4 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R5 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCACTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R6 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTT????GGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGT?????CTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCACTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R7 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCCTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCACTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R8_R9 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTGGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCTCAAT Osmunda_regalis_R10 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R11_R12 CATTCCTGCTAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R13 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTYGTTCAGGTTCTTTGTCGCTCAAGACAGTTATCCCTAATATATATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R14_R15_R16_R17_R18 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCGCTCAAGACAGTTATCCCTAATATATATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_japonica_J1J6J7_J8 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAGGGGCTGGTCTTTTCGTACACTTGCGCTCCTAGCCTTGGACGAATGCCAAAT Osmunda_japonica_J2_J3_J4_J5 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTCGTACACTTGCGCTCCTAGCCTTGGACGAATGCCCAAT Osmunda_hybrida_H245C CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTCGTACACTTGCGCTCCTAGCCTTGGACGAATGCCCAAT Osmunda_lancea_L1 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTATTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTCGTACACTTGCGCTCCTAGCCTTGGAAGAATGCCCAAT Osmunda_lancea_L2_L3 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTATTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTCGTACACTTGCGCTCCTAGCCTTGGATGAATGCCCAAT Osmunda_hybrida_H245A CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTGTTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_hybrida_H245B CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCTTACTATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTTTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_hybrida_H245D CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTTATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_hybrida_H245E CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACGAATGCCCAAT Osmunda_claytoniana CATTCCTGCCAAGCTTTGCAAGCGTGAGAACACAAAGCAGTTCCACGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTGTGTTCAGGTTCTTTGTGGCTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTTTTGATTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTGTTCGTACACTTACGCGCCTAGCCTTGGACGACTGCCCAAT ; END; BEGIN TREES; Title L245; LINK Taxa = Taxa; TRANSLATE 1 Osmunda_regalis_R1_R2_R3_R4, 2 Osmunda_regalis_R5, 3 Osmunda_regalis_R6, 4 Osmunda_regalis_R7, 5 Osmunda_regalis_R8_R9, 6 Osmunda_regalis_R10, 7 Osmunda_regalis_R11_R12, 8 Osmunda_regalis_R13, 9 Osmunda_regalis_R14_R15_R16_R17_R18, 10 Osmunda_japonica_J1J6J7_J8, 11 Osmunda_japonica_J2_J3_J4_J5, 12 Osmunda_hybrida_H245C, 13 Osmunda_lancea_L1, 14 Osmunda_lancea_L2_L3, 15 Osmunda_hybrida_H245A, 16 Osmunda_hybrida_H245B, 17 Osmunda_hybrida_H245D, 18 Osmunda_hybrida_H245E, 19 Osmunda_claytoniana; TREE PAUP_1 = (19:0.017991,((10:0.009812999999999999,(13:0.003331,14:0.0):0.009814,(12:0.0,11:0.0):0.006262,18:0.009212):0.003131,(6:0.0,(8:0.0,9:0.0):0.003333,(5:0.013318,16:0.013383,17:0.006642,7:0.006626,1:0.003313,15:0.006621999999999999,(3:0.003314,4:0.008285,2:0.001657):0.0049700000000000005):0.005283):0.005283):0.017991)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN CODONS; CODONPOSSET * UNTITLED = N: 1- 303 ; CODONPOSSET CodonPositions = N: 1- 303 ; CODESET * UNTITLED = universal: 1 - 303; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 303; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 303; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1306115342481; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5609369379175694504; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4974012208673684444; mqVersion 274; checksumv 0 2 1289327628 null getNumChars 303 numChars 303 getNumTaxa 19 numTaxa 19 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 134199.0 sumSquares -9.2233720368547185E18 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 273; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1486 1125; setLocation 172 95; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5609369379175694504 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1686.1306111575652.6488401665312085570; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1213 1094; setLocation 172 95; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;