#NEXUS [written Mon Jun 06 16:17:22 EDT 2011 by Mesquite version 2.73 (build 544) at dhcp128036177196.central.yale.edu/128.36.177.196] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=26; TAXLABELS Phialocephalas_copiformis_AF486126 Phialocephala_fortinii_AY249076 Phialocephala_repens_EU434847 Cadophora_hiberna_AF530462 Phialocephala_sphaeroides_AY524844 Phialocephala_urceolata_JN053273 Phialocephalal_agerbergii_AF083197 Phialocephala_botulispora_AF083198 Phialocephala_dimorphospora_AF486121 Phialocephala_glacialis_EU434843 Sclerotinia_sclerotiorum_FJ810516 Phialocephala_compacta_AF486125 Meliniomyces_variabilis_EF093167 Chloridium_paucisporum_AU938675 Meliniomyces_vraolstadiae_AJ292199 Meliniomyces_bicolor_AY394885 Cadophora_finlandica_AF486119 Mollisia_rhizophila_JN053274 Cadophora_gregata_U66731 Cadophora_malorum_DQ404350 Leptodontidium_orchidicola_AF214576 Cadophora_luteoolivacea_AY249066 Cadophora_fastigiata_AY249073 Cadophora_melinii_AY249072 Mollisia_cinerella_AJ430228 Mollisia_dextrinospora_AY259134 ; END; BEGIN CHARACTERS; TITLE Cadophora_and_Phialocephala_26S; DIMENSIONS NCHAR=1283; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Phialocephalas_copiformis_AF486126 -CCGTAGGTGAACCTGCGGAAGGATCATTAA---TAAGGAT-------------------------------------------------------------------GCTGGAAGGGGGTGAGCTCACGCCTCCCCTAGA---------CGGT---ATA----CCCCACCC--GTGTCTAT-CTACTCTT-GTTGCTTTGGC-AGGCCGTGGCCTCC-AC---TGT-GGGCTCTGCCT-----GCATGTGCCTGCCAGAGGA---TT--AAACTCTGAATTTTAGTGATGTCTGAGAACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCCT--GGCTTGGTGTTGGGGTT--TGCGGTTC--CGCAGCCCCT---AAAATCAGTGGCGGTGCCGGTGGG-CTCTACGCGTAGTAAAT-CTCCTCGCGATTGAGTTCCCCC--GGT-GG----CCT--GCCAG--AACCCCCAATTTTT---ACA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phialocephala_fortinii_AY249076 ----CAAGTGAGGCTACCGAACAACGT--------------TGGAA-----------------------------------------------------------------ACGCAGGTT------------------------------AGGAG-CTA----CACCCACCC--GTGTTTAC-ATACTATT-GTTGCTTTGGC-GGGCCGT-----GGCCTCCACTGCGGGCTCTGCTC-----GTGTGTGCCCGCCAGAGAA---CC--AAACTCTGAATGTTAGTGATGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTKTTCGAGCGTCATTTAA-CCA-CTC--ACGCCT--AGCGTGGTATTGGGGCA--CGCGGTCTC-CGCGGCCCTC---AAAATGAGTGGCGGCGCCGGTGGG-CTCTAAGCGTAGTACATACTC-CCGCTATAGAGTTCCCCC--GGT-GG----CTC--GCCAG--AACCCCCAATTTTTC--ACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phialocephala_repens_EU434847 -------------------------CATTAATC-AGT-----GGATCCGG---------------------------CGGG------------------GTACTCTTC-----------GGAGGATCCCCGTC-----------------GGGT---AGA---CCTCCACCC--GTGTTTAT-CTACTCTT-GTTGCTTTGGC-GGGCCGTGGCCTCCACTAC----GGGC-TCTGCTC-----GTACGTGCCCGCCAGAGGA---CC--AAACTCTGAATATTAGTGATGTCTGAGAACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCA-CTC--ACGCCT--GGCGTGGTATTGGGGCA--CGCGGTTT--CGCGGCCCTC---AAAATCAGTGGCGGCGCCGGTAGG-CCCTAAGCGTAGTAAAT-CTCCTCGCTATAGGGTCCTCTC--GGT-GG----CTC--GCCAG--AACCCCCAACTTCTT--A-A-GGTTGACCTCGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cadophora_hiberna_AF530462 ----------------------------------ATTAAAAAGGATACCGGGAAAC----------------------------------------------------------------------------------------------CGGT---AGA----CCCCACCC--GTGTCTAT-CTACTCTT-GTTGCTTTGGC-AGGCCGTGGTCTCC-ACAGC---GGGC-TCTGCCT-----GTATTTGCCTGCCAAAGAA---CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGATTCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCTGCAGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCCT--AGCTTGGTATTGGGGTT--CGCGGTCC--CGCGGCCCCT---AAAATCAGTGGCGGTGCCGGTGGGCTTCTAAGCGTAGTAAAT-CTCCTCGCTATAGAGTCTCTCCCC----GGTT--GCTC-GCCAA--AACCCCCCATTTTTT--AC--GGTTGACCTCGGATCAGGTAGGGATACCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phialocephala_sphaeroides_AY524844 TCCGTAGGTGAACCTGCGGAAGGATCATTA-----CCCAAAAGGATACCCTCGTGG-----------------------------------------------------------------------------------------------------TAT---ACCCCACCC--GTGTCTAT-CTACTCTT-GTTGCTTTGGC-AGGCCGTGGTCTT----CCACTGTGGGCTCTGCCT-----GCATGTGCCTGCCAGAGGA---CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTACAACCA-AAATTAAGCCCA-GCTT-AGTGTTGGGGTT--CGCAGTTC--TGCGGCCCTT---AATATCAGTGGCGGTGCCTGTAGG-CTCTGAGCGTAGTAATT-CTTCTCGCTATAGAGCCCTATAA-GTGT------CTT--GCCAG--AACCCCCATATTTTTT-CA--GGTTGACCTCGGATCAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phialocephala_urceolata_JN053273 -CCGTAGGTGAACCTGCGGAAGGATCATT-------AAAAAAGGATACTGGGAAAC----------------------------------------------------------------------------------------------CGGT---AGA----CCCCACCC--GTGTTTAT-CTACTCTT-GTTGCTTTGGC-AGGTCGTGGTCTCC-ACC---GT-GGACTCTATCC-----GCGTGTGCCTGCCAGAGGA---CC--AAACTCTGAATATTAGTGATGTCCGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATAATAGCCA-CTC--AAGCAT--AGCTTGGTATTGGAGTT--CGCGGTCT--CGCGGCCCCT---AAAATCAATGGCGGTGCCGGTGGG-CTCTAAGCGTAGTAAAT-CTCCTCGCTATAGAGTTAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phialocephalal_agerbergii_AF083197 -CCGTAGGTGAACCTGCGGAAGGATCATTAATC-AGT-----GGATCCGG---------------------------CGGGGAAT--------------CCCCTCTCCCCCGAGAGGGGGT---CGCCTCGCC-----------------GGGT---AGA---CCTCCACCC--GTGCTTAC-CTACTCTT-GTTGCTTTGGC-GGGCCGTGGCCTCCACTAC-----GGGCTCTGCTC-----GTACGTGCCCGCCAGAGGA---CC--AAACTCTGAATATTAGTGATGTCTGAGAACTATTTCATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCA-CTC--ACGCCT--GGCGTGGTGTTGGGGC--ACGCGGTTC--CGCGGCCCTC---AAAATCAGTGGCGGCGCCGGTAGG-CCCTAAGCGTAGTAAAT-CTCCTCGCTATAGGGTCCTCTC--GGT-GG----CTC--GCCAG--AGCCCCAACTTCTTT--A-A-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phialocephala_botulispora_AF083198 --CGTAGGTGAACCTGCGGAAGGATCAT-A-------TCAGTGG-TCCGGCGGGG------------------------------------------AAACCCTCTCCCCCGAGAGGGGGTCGCCTCGCC--------------------GGGT---AGA---CCTCCACCC--GTGCTTAC-CTACTCTT-GTTGCTTTGGC-GGGCCGTGGCCTCCACTAC-----GGGCTCTGCTC-----GTACGTGCCCGCCAGAGGA---CC--AAACTCTGAATATTAGTGATGTCTGAGAACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCA-CTC--ACGCCT--GGCGTAGTGTTGGGGC--ACGCGGTTC--CGCGGCCCTC---AAAATCAGTGGCGGTGCGGGTAGG-CCCTAAGCGTAGTAAAT-CTCCTCGCTATAGGGTCCTCTC--GGT-GG----CTC--GCCAG--AACCCCCAACTTCTT--A-A-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phialocephala_dimorphospora_AF486121 -CCGTAGGTGAACCTGCGGAAGGATCATTAATC-AGT-----GGATCCGG---------------------------CGGGGGACTCGTAAAAGAGGATCCCCGTC--------------------------------------------GGGT---AGA---CCTCCACCC--GTGCCTAC-CTACTCTT-GTTGCTTTGGC-GGGCCGTGGCCTCCACTAC-----GGGCTCTGCTC-----GTACGTGCCCGCCAGAGGA---CC--AAACTCTGAATATTAGTGATGTCTGAGAACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCA-CTC--ACGCCT--GGCGTGGTATTGGGGC--ACGCGGTTC--CGCGGCCCTC---AAAATCAGTGGCGGCGCCGGTAGG-CCCTAAGCGTAGTAAAT-CTTCTCGCTATAGGGTCCTCTC--GGT-GG----CTC--GCCAG--AACCCCCAACTTCTC--A-A-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phialocephala_glacialis_EU434843 -------------------------CATTAA------CAA--GGTTATGGGTGCACGTCGCGTAAGCGA---------------------------------------------------CCTCT-CCCCTCT------------------------------CCTCCACCC--GTGTCTAC-ATACTCTT-GTTGCTTTGGC-GGGCCGTGGCCTCCACTAC-----GGGTTCTGCTC-----GTACGTGCCCGCCAGAGGA---CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTATGACCA-CTC--ACGCCT--GGCGTGGTGTTGAGGC--ACGCGGTTC--CGCGGCCCTC---AAATCCAGTGGCGGCGCCGGTTGG-CTCTAAGCGTAGTAAAA-CTTCTCGCTTGAGGGTCCTCCC--GGT-GG----CTC--GCCAG--AACCCCCCAACTTCTT-A-A-GGTTGACCTCGGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sclerotinia_sclerotiorum_FJ810516 -CCGTAGGTGAACCTGCGGAAGGATCATTA-C-AGAGTTCAT------------------------------------------------------------------------------------GCCCGAAA----------------GGGT---AGAC--CTCCCACCCT-TGTGTATT-ATTACTTT-GTTGCTTTGGCGAG-C--TGCTCTT---------CGGGGCCTT---------GTATGCTC--GCCAGAGAA---TATCAAACTCTTTTTATTAATGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACC--CTC--AAGCTCA--GCTTGGTATTGAGTCCA-TGTCAGTAATGGCAGGCTCT---AAAATCAGTGGCGGCGCCGCTGGG-TCCTGAACGTAGTAATATCTC-TCGTTACAGGTTCTC-----GGT-GTGCTTCT---GCCAA--AACCC-AAATTTTCT--AT--GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phialocephala_compacta_AF486125 -CCGTAGGTGAACCTGCGGAAGGATCATTA-------CAA--GTGAAGCGGTCGAGCACTCG----------------------------------------------------------------------------AGAGAGTGATT-AGGCT---GCTTACACCCACCC--GTGTCTAC-ATACTCTT-GTTGCTTTGGC-GGGCCGT-----GGCCTCCACTACGGGCTCTGCTC-----GCGTGTGCCCGCCAGAGGA---CC--AAACTCTGAATGTTAGTAACGTCTGAGTATTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAACCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTGA-CCA-CTC--AAGCCC--AGCTTGGTGTTGGGGC--ACGCGGCTC--CGCGGCCCTT---AAAGACAGTGGCGGCGCCGGTGGG-CTCTAAGCGTAGTACATACTC-CCGCTATAGAGTTCCCCC--GGT-GG----CTC--GCCGG--AACCCCCAATCTTTT--ACA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Meliniomyces_variabilis_EF093167 TCCGTAGGTGAACCTGCGGAAGGATCATT----AAAAAAAGAGAAACGCCCCATTTTTTTCATAAGAA-T--------------------------------------------------------------------------------GGGTT-CTATTC--CCTTAAACC-GTGTCTAC-ATACCTTT-GTTGCTTTGGC-AGGCCG-------CCCTCGGGCGTCGGCTCCGGCT-----GATAGTGCCTGCCAGAGGA---CCC-AAACTC-TATGTTTAGTGATGTCTGAGTACTATATAATATTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTTTAACCA-CTC--AAGCCTG--GCTTGGTATTGGGGTTTTCGCGTGCT--CGCGGCCCTT---AAAATCAGTGGCGGTGCCGTCTGG-CTCTAAGCGTAGTAATTTCTC-TCGCTATAGGGTTCC-----GGT-GGTT-ACTT--GCC-A-AAACCCCCCATTTTTT--CTA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Chloridium_paucisporum_AU938675 -CCGTAGGTGAACCTGCGGAAGGATCATT----------AAAGAATCGCCCCGTTTTTT------GAAAT--------------------------------------------------------------------------------GGGTTC-TA----TTCCCAAACC-GTGTATAC-ATACCTTT-GTTGCTTTGGC-AGGCCG-----CCTTTTAGGCGTCGGCTCCGGCTG------ACTGCGCCTGCCAGAGGA---CCC-AAACTCTTTTGTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCCTC-GGTTTGGTCTTGGGGT--TCGCGGTTT--CGCGGCCCTT---AAAATCAGTGGCGGTGCCGTCTGG-CTCTAAGCGTAGTAATT-CTC-TCGCTATAGGGTGCCA----GGTG--ACCACCT--GCCAT--AACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Meliniomyces_vraolstadiae_AJ292199 -------------------------CATT----------AAAGAATCGCCCCGTTTTTT------GAAAT--------------------------------------------------------------------------------GGGTTC-TATT----CCCAAACC-GTGTATAC-ATACCTTT-GTTGCTTTGGC-GGGCCG----CCTTCGGGCGTTGGCTTCTAGCTGA-------CTGCGCCCGCCAGAGGA----CCCAAACTCGTTTGTTTAATGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCCTT-GGCTTGGTATTGGGGTT-TCGCGGTTC--CGCGGCCCTT---AAAATCAGTGGCGGTGCCGTCTGG-CTCTAAGCGTAGTAATT-CTC-TCGCTATAGGGTCCC-----GGC-GGTGG-CTT--GCCAG--AACCCCCCTATTTTT--CTATGGTTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Meliniomyces_bicolor_AY394885 TCCGTAGGTGAACCTGCGGAAGGATCATT----------AAAGAATCGCCCCGTTTTTT------GAAAT--------------------------------------------------------------------------------GGGTT-CTATT----CCCAAACC-GTGTATAC-ATACCTTT-GTTGCTTTGGC-AGGCCG-----CCTTTTAGGCGTCGGCTT-CGGCT-----GACTGCGTCTGCCAGAGGA---CCC-AAACTCGTTTGTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCCTC-GGCTTGGTCTTGGGGTT--CGCGGTCT--CGCGTCCCTT---AAAATCAGTAGCGGTGCCGTCTGG-CTCTAAGCGTAGTAATT-CTC-TCGCTATAG-----------GGT-CCCGGCGGT--TGCCTGCCAGAACCCCCCATTTTTTAC-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACACGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCTTTCAGGGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTGTGGCTCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTACGTGACTGGGTGCCTTCGCTCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCGCGCTGCTGATCATCCGAGCTTTTGCCCGGTGCACTCGGCAGCGCTCAGGCCAGCATCGGTTTTGGTGGGCGGATAAAGGCCTTGGGAATGTAGCTCTCTTCGGGGAGTGTTATAGCCCTCGGTGCAATGCGCCCTACCGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCG Cadophora_finlandica_AF486119 TCCGTAGGTGAACCTGCGGAAGGATCATT----------AAAGAATCGCCCCGTTTTTT------GAAAT--------------------------------------------------------------------------------GGGTTCTA-----TTCCCAAACC-GTGTATAC-ATACCTTT-GTTGCTTTGGC-AGGCCG-----CCTTTTAGGCGTCGGCTCCGGCTG------ACTGCGCCTGCCAGAGGA---CCC-AAACTCTTTTGTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCCTC-GGCTTGGTCTTGGGGTT--CGCGGTTT--CGCGGCCCTT---AAAATCAGTGGCGGTGCCGTCTGG-CTCTAAGCGTAGTAATT-CTC-TCGCTATAGGGTCCA-----GGTG--ACCACCT--GCCAT--AACCCCCATTCTTT----AC-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mollisia_rhizophila_JN053274 -------------------AAGGATCATTACT--AGAGCAAAGGATAGACAGCGCCCGCGGA------GCTCGCTCCCGGGG-----------------CTACCC-TCTTTGGTAGGGTTT-AGAGTCGTCGGGCCTCTCAGAGAAGCTC-GGTCC-TGAA---CTCCACCCT-TGAATAAA-CTACCTTT-GTTGCTTTGGC-GGGCCG------CCTCGTGCCAGCGGCTTCGGCTG-----TTGAGTGCCCGCCAGAGGA--CCCATAA-CTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCTCT-CGCTTGGTATTGGGGTT--CGCGGTTT--CGCGGCCCCT---AAAATCAGTGGCGGTGCCTGTCGG-CTCTACGCGTAGTAATA-CTCCTCGCGATTGAGTCC------GGCAGGTCTACTT--GCCAGC-AACCCCTAATTTTTTTT-A-AGGTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cadophora_gregata_U66731 ---------------GCGGAAGGATCATTACTAG--AGCAAAGGATAGGGAGACCC-CACAGGAGC-----------------------------------------TTGCTCCGTGGTGGGCTACCCGTCGAGCCTCTCGAAGAAGCTC-GGTCC-TGAA---CTCCACCCT-TGAATAAA-TTACCTTT-GTTGCTTTGGC-GGGCCG------CCTCGCGCCAGCGGCTTCGGCTG-----TTGCGTGCCCGCCAGAGGA---CCCCAA-CTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCTCT-CGCTTGGTATTGGGGTT--CGCGGTTC--CGCGGCCCCT---AAAATCAGTGGCGGTGCCTGTCGG-CTCTACGCGTAGTAATA-CTCCTCGCGATTGAGTCT------GGCAGGTCTACCT--GCCAGC-AACCCCCAAATCTTT---ACAGGTTGACCTCGGATCAGGTAGGGATACCCCGCTGAACTTAAGCATATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cadophora_malorum_DQ404350 -CCGTAGGTGAACCTGCGGAAGGATCATTAA-------CAAACCTAAGGCGCTCGCGCTCAC-----------------------------------------------------------------------------------------------------AGGTAACCCT-TGAATAAA-CTACCTTC-GTTGCTTTGGC-GGGCCG---CCTCTCGAGGCCAGCGGCTTCGGCTG-----CTGCGCGCCCGCCAGAGGA---CCACAA-CTCTTGTTTTCAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCCTT-CGCTTGGTATTGGGGCT--CGCGGTCG--CGCGGCCCCT---AAAATCAGTGGCGGTGCCGGCTGG-CTCTACGCGTAGTAATA-CTCCTCGCGTCTGGGTCC------GGTCGGTTG-CCT--GCCAGC-AACCCCCCATTTTT----ACAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Leptodontidium_orchidicola_AF214576 -------------------------CATTACT--AGAGCAAAGGATAGACAGCGCCCGCGGA------GCTCGCTCCCGGGG-----------------CTACCCTACTCCCGTAGGGTTT-AGAGTCGTCGGGCCTCTCGGAGAAGCTC-GGTCC-TGAA---CTCCACCCT-TGAATAAA-CTACCTTT-GTTGCTTTGGC-GGGCCG------CCTCGTGCCAGCGGCTTCGGCTG-----TTGAGTGCCCGCCAGAGGACCCCCCCAA-CTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCTCT-CGCTTGGTATTGGGGTT--CGCGGTTT--CGCGGCCCCT---AAAATCAGTGGCGGTGCCTGTCGG-CTCTACGCGTAGTAATA-CTCCTCGCGATTGAGTCC------GGTAGGTCTACTT--GCCAGC-AACCCCTAATTTTTTT--A-AGGTTGACCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Cadophora_luteoolivacea_AY249066 ------------------------------CT--AGAGCAAAGGACAGGCAGCGCCCCACAGAAGCTTGCTTCGTGGCGGGG-----------------CTACCCTACTTCGGTAGGGTTT-AGAGCCGTCGACCCTCTCGGAGAAGGTC-GGTCC-TGAA---CTCCACCCT-TGAATAAA-CTACCTTT-GTTGCTTTGGC-GGGCCG------CCTCGCGCCAGCGGCTTCGGCTG-----TTGAGTGCCCGCCAGAGGA---CCACAA-CTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCTCT-CGCTTGGTATTGGGGTT--CGCGGTTT--CGCGGCTCCT---AAAATCAGTGGCGGTGCCTGTCGG-CTCTACGCGTAGTAATA-CTCCTCGCGTCTGGGTCC------GGTAGGTCTACTT--GCCAGC-AACCCCCAATTTTT----ACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cadophora_fastigiata_AY249073 -----------------------------AT--------AAACCTAGTCGTTCGCGTACAC-----------------------------------------------------AGGGGCAACCCTCGCGCGATGTCAGCAATACCT---AGGT-------------CACCCT-TGAATAAA-CTACCCTT-GTTGCTTTGGC-GGGCCG---CCCCTCGGGGCCAGCGGCTTCGGCTG-----CTGCGCGCCCGCCAGAGGA---CCACAA-CTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCCTT-CGCTTGGTATTGGGGTT--CGCGGCTG--CGCGGCCCCT---AAAATCAGTGGCGGTGCCTGTCGG-CTCTACGCGTAGTAATA-CTCCTCGCGTCTGGGTTCC-----GGTAGGTTG-CTT--GCCAGC-AACCCCTAAATTTTTT--ACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cadophora_melinii_AY249072 -----------------------------AT--------AAACCTAGTCGTTCGCGTACAC-----------------------------------------------------AGGGGCAACCCTCGCGCGATGTCAGCAATACCT---AGGT-------------CACCCT-TGAATAAA-CTACCCTT-GTTGCTTTGGC-GGGCCG---CCCCTCGGGGCCAGCGGCTTCGGCTG-----CTGCGCGCCCGCCAGAGGA---CCACAA-CTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCCTT-CGCTTGGTATTGGGGTT--CGCGGCTG--CGCGGCCCCT---AAAATCAGTGGCGGTGCCTGTCGG-CTCTACGCGTAGTAATA-CTCCTCGCGTCTGGGTTCC-----GGTAGGTTG-CTT--GCCAGC-AACCCCTAAATTTTTT--ACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mollisia_cinerella_AJ430228 -------------------------CATTACC-AGTGACACAAACTCAT----------------------------------------------------------------GCCGGGGGCTTCGGCCCCCGGGC--------------CGGT---TGAA--T-CCCACCC--GTGTCTAC-ATACTCTT-GTTGCTTTGGC-AGGCCGTGGTCT---ACCACTGT-AGGCTCTGCCT-----GCATGTGCCTGCCAGAGGA---CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAGATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCCT--GGCTTGGTATTGGAGTT--TGCGGTTC--CGCAGCTTCT---AAAATCAGTGGCGGTGCCGGTGTGGCTCTACGCGTAGTAATT-CTTCTCGCGATGGAGTTCCCT-------GGTTGCCTT--GCCAG--AACCCCCCAATTTTTTTACA-GGTTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mollisia_dextrinospora_AY259134 --------------------------ATTAAT-------AAACCTAGTCGTTCGCGTACAT-----------------------------------------------------AGGGGCAACCCTCGCGTGATGTCAGCAATACCT---AGGT-------------AACCCT-TGAATAAA-CTACCCTC-GTTGCTTTGGC-GGGCCG----CCTTCTAGGCCAGCGGCTTCGGCTG-----CTGCGCGCCCGCCGGAGGA---CCACAA-CTCTTGTTTTTAGTGACGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATAACCA-CTC--AAGCCCT-CGCTTGGTATTGGGGCT--CGCGGTCT--CGCGGCCTCT---AAACTCAGTGGCGGTGCCTGTCGG-CTCTACGCGTAGTAATA-CTCCTCGCGTCTGGGTCC------GGTAGGTTG-CCT--GCCAGC-AACCCCAAATTTTT----ACAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1283; END; BEGIN TREES; Title NJ_result; LINK Taxa = Taxa; TRANSLATE 1 Phialocephalas_copiformis_AF486126, 2 Phialocephala_fortinii_AY249076, 3 Phialocephala_repens_EU434847, 4 Cadophora_hiberna_AF530462, 5 Phialocephala_sphaeroides_AY524844, 6 Phialocephala_urceolata_JN053273, 7 Phialocephalal_agerbergii_AF083197, 8 Phialocephala_botulispora_AF083198, 9 Phialocephala_dimorphospora_AF486121, 10 Phialocephala_glacialis_EU434843, 11 Sclerotinia_sclerotiorum_FJ810516, 12 Phialocephala_compacta_AF486125, 13 Meliniomyces_variabilis_EF093167, 14 Chloridium_paucisporum_AU938675, 15 Meliniomyces_vraolstadiae_AJ292199, 16 Meliniomyces_bicolor_AY394885, 17 Cadophora_finlandica_AF486119, 18 Mollisia_rhizophila_JN053274, 19 Cadophora_gregata_U66731, 20 Cadophora_malorum_DQ404350, 21 Leptodontidium_orchidicola_AF214576, 22 Cadophora_luteoolivacea_AY249066, 23 Cadophora_fastigiata_AY249073, 24 Cadophora_melinii_AY249072, 25 Mollisia_cinerella_AJ430228, 26 Mollisia_dextrinospora_AY259134; TREE PAUP_1 = (11:0.1905595,(((19:0.098833,(22:0.015755,(18:0.010975,21:0.005033):0.032536):0.005073):0.060362,(20:0.038876,(26:0.026772,(23:0.0,24:0.0):0.02244):0.055553):0.092562):0.113498,((13:0.056629,(15:0.071807,(16:0.073626,(14:0.005399,17:0.006463):0.019065):0.045295):0.030433):0.099806,((5:0.171166,(25:0.1395,(1:0.068178,(4:0.058071,6:0.082778):0.005109):0.01193):0.029631):0.0,((2:0.108043,12:0.058759):0.062524,(10:0.088432,(3:0.031208,(9:0.021158,(7:0.024114,8:0.016265):0.001444):0.00557):0.046861):0.040576):0.066848):0.059379):0.075612):0.1905595)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1283; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1283; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1307391442975; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4152210863577122839; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2763072530674596489; mqVersion 273; checksumv 0 2 1477615706 null getNumChars 1283 numChars 1283 getNumTaxa 26 numTaxa 26 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 317797.0 sumSquares 317797.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 273; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1206 621; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4152210863577122839 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 896.1307391434043.209992962787959689; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 933 554; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2763072530674596489 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 933 554; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;