#NEXUS begin taxa; dimensions ntax=70; taxlabels Carpediemonas_membranifera_QB Carpediemonas_membranifera_BICM Trimastix_pyriformis Trimastix_marina Thalassiosira_pseudonana Phytophthora_sojae Plasmodium_falciparum Amphidinium_carterae Toxoplasma_gondii Eimeria_tenella Cyanophora_paradoxa Paramecium_tetraurelia Tetrahymena_thermophila Stylonychia_lemnae Dictiostelium_discoideum Entamoeba_histolytica Mastigamoeba_balamuthi Anopheles_gambiae Drosophila_melanogaster Bombix_mori Caenorhabditis_elegans Danio_rerio Gallus_gallus Homo_sapiens Mus_musculus Rattus_norvegicus Monosiga_brevicollis Neurospora_crassa Ajellomyces_capsulatus Saccharomyces_cerevisiae Candida_albicans Schizosaccharomyces_pombe Porphyra_purpurea Guillardia_theta Chlamydomonas_reindhardtii Oryza_sativa Triticum_aestivum Arabidopsis_thaliana Malawimonas_jakobiformis Rhynchopus_sp Leishmania_major Trypanosoma_cruzi Trypanosoma_brucei Rhynchomonas_nasuta Euglena_gracilis Reclinomonas_americana Naegleria_gruberi Andalucia_incarcerata Andalucia_godoyi Hicanonectes_teleskopos_SB Ergobibamus_cyprinoides_CL NC NY0171 PCE Dysnected_brevis_NY0165 Giardia_intestinalis Spironucleus_barkhanus Spironculeus_salmonicida Spironucleus_vortens Trepomonas_sp_PCI Enteromonas_hominis_ENTEROII Enteromonas_sp_GECA2 Trimitus_sp_TRION PSEUD Hexamita_inflata Retortamonas_sp_VALE Chilomastix_caulleri Kipferlia_bialata_NY0166 Kipferlia_bialata_NY0173 Kipferlia_bialata_ppp15C ; end; begin trees; tree tree_1 = [&R] (((((((Carpediemonas_membranifera_QB:0.05892,Carpediemonas_membranifera_BICM:0.05728)[&label=0.0]:0.2011,((Trimastix_pyriformis:0.07646,Trimastix_marina:0.08995)[&label=0.0]:0.12926,((((Thalassiosira_pseudonana:0.16472,Phytophthora_sojae:0.09388)[&label=0.0]:0.08104,(((Plasmodium_falciparum:0.16645,(Amphidinium_carterae:0.11982,(Toxoplasma_gondii:0.05348,Eimeria_tenella:0.08278)[&label=0.0]:0.02393)[&label=0.0]:0.01144)[&label=0.0]:0.01681,Cyanophora_paradoxa:0.10235)[&label=0.0]:0.07473,((Paramecium_tetraurelia:0.09349,Tetrahymena_thermophila:0.17326)[&label=0.0]:0.05949,Stylonychia_lemnae:0.14033)[&label=0.0]:0.06134)[&label=0.0]:0.03314)[&label=0.0]:0.03287,((Dictiostelium_discoideum:0.21372,(Entamoeba_histolytica:0.25603,Mastigamoeba_balamuthi:0.15693)[&label=0.0]:0.0348)[&label=0.0]:0.02726,((((((Anopheles_gambiae:0.06037,Drosophila_melanogaster:0.04589)[&label=0.0]:0.04051,Bombix_mori:0.04817)[&label=0.0]:0.03778,Caenorhabditis_elegans:0.13356)[&label=0.0]:0.017,(Danio_rerio:0.03531,(Gallus_gallus:0.01364,(Homo_sapiens:5.1E-4,(Mus_musculus:0.0026,Rattus_norvegicus:0.0)[&label=0.0]:0.0)[&label=0.0]:0.00656)[&label=0.0]:0.0168)[&label=0.0]:0.06247)[&label=0.0]:0.05528,Monosiga_brevicollis:0.11037)[&label=0.0]:0.06189,((Neurospora_crassa:0.05402,Ajellomyces_capsulatus:0.07625)[&label=0.0]:0.0412,((Saccharomyces_cerevisiae:0.05674,Candida_albicans:0.03862)[&label=0.0]:0.0495,Schizosaccharomyces_pombe:0.09736)[&label=0.0]:0.02717)[&label=0.0]:0.09442)[&label=0.0]:0.03398)[&label=0.0]:0.01776)[&label=0.0]:0.01051,(((Porphyra_purpurea:0.14651,Guillardia_theta:0.13539)[&label=0.0]:0.05593,(Chlamydomonas_reindhardtii:0.10134,((Oryza_sativa:0.0253,Triticum_aestivum:0.01839)[&label=0.0]:0.01111,Arabidopsis_thaliana:0.02706)[&label=0.0]:0.07081)[&label=0.0]:0.07236)[&label=0.0]:0.03849,(Malawimonas_jakobiformis:0.20201,(((Rhynchopus_sp:0.14665,((Leishmania_major:0.05096,(Trypanosoma_cruzi:0.02841,Trypanosoma_brucei:0.03607)[&label=0.0]:0.01921)[&label=0.0]:0.04344,Rhynchomonas_nasuta:0.10725)[&label=0.0]:0.16053)[&label=0.0]:0.02944,Euglena_gracilis:0.1753)[&label=0.0]:0.10525,((Reclinomonas_americana:0.21486,Naegleria_gruberi:0.32402)[&label=0.0]:0.02814,(Andalucia_incarcerata:0.1479,Andalucia_godoyi:0.16623)[&label=0.0]:0.04688)[&label=0.0]:0.00888)[&label=0.0]:0.02056)[&label=0.0]:0.02348)[&label=0.0]:0.01388)[&label=0.0]:0.04415)[&label=0.0]:0.07353)[&label=0.0]:0.02718,(Hicanonectes_teleskopos_SB:0.35904,(Ergobibamus_cyprinoides_CL:0.06024,NC:0.08546)[&label=0.0]:0.1378)[&label=0.0]:0.03945)[&label=0.0]:0.0475,(NY0171:0.01163,PCE:0.00945)[&label=0.0]:0.30798)[&label=0.0]:0.05727,((Dysnected_brevis_NY0165:0.19049,((Giardia_intestinalis:0.21364,(((Spironucleus_barkhanus:0.10542,Spironculeus_salmonicida:0.06095)[&label=0.0]:0.06905,Spironucleus_vortens:0.20046)[&label=0.0]:0.0344,(Trepomonas_sp_PCI:0.10025,((Enteromonas_hominis_ENTEROII:0.09094,Enteromonas_sp_GECA2:0.07476)[&label=0.0]:0.0516,(Trimitus_sp_TRION:0.06283,(PSEUD:0.50025,Hexamita_inflata:0.04476)[&label=0.0]:0.04068)[&label=0.0]:0.05411)[&label=0.0]:0.01946)[&label=0.0]:0.06203)[&label=0.0]:0.10553)[&label=0.0]:0.07715,Retortamonas_sp_VALE:0.18822)[&label=0.0]:0.07731)[&label=0.0]:0.09132,Chilomastix_caulleri:0.53115)[&label=0.0]:0.03277)[&label=0.0]:0.29244,Kipferlia_bialata_NY0166:0.01006)[&label=0.0]:0.00747,Kipferlia_bialata_NY0173:0.00145,Kipferlia_bialata_ppp15C:0.00165)[&label=0.0]; end; begin figtree; set appearance.backgroundColorAttribute="User Selection"; set appearance.backgroundColour=#-1; set appearance.branchColorAttribute="User Selection"; set appearance.branchLineWidth=1.0; set appearance.foregroundColour=#-16777216; set appearance.selectionColour=#-2144520576; set branchLabels.colorAttribute="User Selection"; set branchLabels.displayAttribute="Branch times"; set branchLabels.fontName="sansserif"; set branchLabels.fontSize=8; set branchLabels.fontStyle=0; set branchLabels.isShown=false; set branchLabels.significantDigits=4; set layout.expansion=0; set layout.layoutType="RECTILINEAR"; set layout.zoom=0; set nodeBars.barWidth=4.0; set nodeLabels.colorAttribute="User Selection"; set nodeLabels.displayAttribute="Node ages"; set nodeLabels.fontName="sansserif"; set nodeLabels.fontSize=8; set nodeLabels.fontStyle=0; set nodeLabels.isShown=false; set nodeLabels.significantDigits=4; set polarLayout.alignTipLabels=false; set polarLayout.angularRange=0; set polarLayout.rootAngle=0; set polarLayout.rootLength=100; set polarLayout.showRoot=true; set radialLayout.spread=0.0; set rectilinearLayout.alignTipLabels=false; set rectilinearLayout.curvature=0; set rectilinearLayout.rootLength=100; set scale.offsetAge=0.0; set scale.rootAge=1.0; set scale.scaleFactor=1.0; set scale.scaleRoot=false; set scaleAxis.automaticScale=true; set scaleAxis.fontSize=8.0; set scaleAxis.isShown=false; set scaleAxis.lineWidth=1.0; set scaleAxis.majorTicks=1.0; set scaleAxis.origin=0.0; set scaleAxis.reverseAxis=false; set scaleAxis.showGrid=true; set scaleAxis.significantDigits=4; set scaleBar.automaticScale=true; set scaleBar.fontSize=10.0; set scaleBar.isShown=true; set scaleBar.lineWidth=1.0; set scaleBar.scaleRange=0.0; set scaleBar.significantDigits=4; set tipLabels.colorAttribute="User Selection"; set tipLabels.displayAttribute="Names"; set tipLabels.fontName="sansserif"; set tipLabels.fontSize=8; set tipLabels.fontStyle=0; set tipLabels.isShown=true; set tipLabels.significantDigits=4; set trees.order=false; set trees.orderType="increasing"; set trees.rooting=false; set trees.rootingType="User Selection"; set trees.transform=false; set trees.transformType="cladogram"; end;