#NEXUS [written Sat Aug 27 12:45:47 EDT 2011 by Mesquite version 2.74 (build 550) at david-morgans-imac-g5.local/160.10.46.103] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=34; TAXLABELS Herrickia_kingii_1 Herrickia_kingii_2 Herrickia_kingii_3 Herrickia_kingii_4 Canadanthus_modestus Symphyotrichum_gypsophilum Ampelaster_carolinianus Symphyotrichum_spathulatum Symphyotrichum_drummondii Symphyotrichum_undulatum Symphyotrichum_trilineatum_A Symphyotrichum_moranense_A Symphyotrichum_foliaceum Symphyotrichum_subspicatum Symphyotrichum_dumosum Symphyotrichum_lateriflorum Symphyotrichum_pilosum Symphyotrichum_praealtum Symphyotrichum_puniceum Symphyotrichum_retroflexum Symphyotrichum_divaricatum Symphyotrichum_tenuifolium Symphyotrichum_patens Symphyotrichum_novaeangliae Symphyotrichum_oblongifolium Symphyotrichum_concolor Symphyotrichum_pratense Symphyotrichum_ericoides Symphyotrichum_adnatum Almutaster_pauciflorus Psilactis_brevilingulata Psilactis_asteroides Psilactis_tenuis Psilactis_odysseus ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=430; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Herrickia_kingii_1 TTGCAACCCTC--TTTTTGT-------AATTCG--TTTTTCAGCCTTGGGTTGCATTTTTGGTTTATTTT-AATTTTT-------------------TTAATGGAT-TTTATAATTATTATCGTCATAACAGATATTTTGTTTGACGGA---GAAAAAAAAA-CGTTAAATTTTTTTAATAAAAGCTGCGTCGCAGAAAGAGATGCAAGGGCGGGCGGGGGC-GGCGCTCGCG-AAATCC-GGGGAAATGGGAAAA-GCAAGAGACGGACGGG--CGCGTGGAGTGACCGAGACGAAGCAAGACGTTCGGAGAGGATACCGGGTTGAAACGAGCCCGTGAGGCGACATACGAGTGAACAAATGGAGGAGGGAACTTCATGGGTGAAGGGATAAAAGAATTAAACAATGGATGAATTTTGGTTGC Herrickia_kingii_2 TTGCAACCCTC--TTTTTGTTTTT-GTAATTCG--TTTTAAAGCCATGGGTTGCGCTTTTGGTTTATTTTGAATTTTT-------------------TTAATGGAT-TTTCTAGTTATTATCGTCAAAACAGATATTTTGTTTGACGGA---GAAAAAAAAA-CATTTATTTTTTTTAATAAAAGCTGCGTCGCAGAAAAAGAAGCAAGGGCGGGCGTGGGC-GGCGCTTGCG-AAAGCC-GGGGAAACGAGAAAA-GCGAAAGACGGACGGG--CGCGGGGAGTGACCGGGATGAAGCAAGACGCTCGGAGAGGATATTGGGTTGAAACGACACCGTGAGGCGACATATGGGTGAACAAATGGAATAGGGATCTTCCTGGGATAAGGGATAAAAGAATTAAACCAAGGATGTATTTCGGTTGC Herrickia_kingii_3 TTGCAACCCTC--TTTTTGTTTTT-GTAATTCG--TTTTTCAGCCATGGGTTGCGCTCTTGGTTTATTTA-AATTTTT-------------------TTAATGGAT-TTTATAATTATTATCGTCATAACAGATATTTTGTTTGACGTA---GAAAAAAAAA-TGTTTATTTTTTTTAATAAAAGCTGGGCCGCAGAAAGGGAAGCAAGGGC-----------GGCGCACGCG-GAAGCC-GGGGAAACGAGAAAA-GAAAGAGACAGACGGG--CGCGGGGAGTGACCGGGATGAAGCAAGACGTTCGGAAAGGATACCGGGTTGAAACGAGCCCGTGAGGCGACATACGGGTGAACAAAAGGAGGAGGGAACTTCCTGGGGTAAGGGATAAAAGAATTACACAAAGGATGTATTTCGGTTGC Herrickia_kingii_4 TTGCAACCATC--TTTTTGTTTTT-GTAATTCG--TTTTTTAGCCATGGGTTGCGCTTTTGGTTTATTTT-AATTTTT-------------------TTAATGGAT-TTTATAATTATTATCGTCATAACAGATATTTTGTTTGACGG----GAAAAAAAAA-CGTTTATTTTTTTTAATAAAAGCTGCGTCGCTGAAAGAGAAGCAAGGGCAGGCGGGGGC-GGCGCTGGCG-AAAGCC-GGGGAAACGAGAAAA-GCAAGAGACGGACGGG--CGCGGGGAGATACCGGGATGAAGCAAGACGTTCGGAGAGGATACCGGGTTGAAACGAGCCCGTGAGGCGACATATGGGTGAACAAATGGAGGAGGGAACTTCATGGGGTAAGGGATAAAAGAACTAAACAAAGGATGTATTTCGGTTGC Canadanthus_modestus TTGCAACCCCC--TTTTTGATCAT-ACCAATCG--TTATTCAGCCACGGGATGCGCTTTTGGTTCATTTAATTTTTTT---------------------AACGGAT-TTTATAATCATCATCGGCATAACATATATTTCGTTTGGCGGA---GAGAAGAATT-TTTTTTTTGTTTTTTCATAAAGCCGCGTCGCAGAAACGGAACCAAGGGCGGGCGGCGGC-GGCGCTCGCG-GAAGTG-GGGGAAACGAGAAAA-GCAAAAGACGGACGGG--CGAGGGGAGTGACCGGGAAGAAGTATGACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGGCATACGGGTGAACAGATGGGGGAGGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_gypsophilum TTGCAACCCCC--TTTTTGTTTTT-GTAAATCG--TTTTTCTGCCACGGGTGGCGCTTTTGGTTTATTTTA---TTTT------------------TTTAATGGATTTTTTTAATTAACATCGTCATGACATATATTTTGTTGGACGGA---GAAAAGAAACTTTTTTTTTTAATATTAATAAACCCGCGTCGCAGAAACGGAACCA-----GGGC--CGGC-GGCGCGCGCG-AAAGTC-GGGGAAACGAGAAAA-GCTACAGACGGACGGGCGCGGGGGGAGTGACCGGGATGAAGTAAGACGTTCGGAGAGGATACCGGGTTGGAACGAGCTGGTGAGGCGGCATACGGGTGAACAAATGGAGGAGGGAACTTCCTGGGGTAAGGGATAAAACAATTAAACGAAGGATGTATTTCGGTTGC Ampelaster_carolinianus TTGCAACCCCT--TTTT-CTTTAT-GTGAATCG--TTTTTCAGCCACGGGTTGCGCTTGCGGTTTGTTTTA--TTTTT------------------TTTAATGGAT-TTTATAATTACTAACGCCATAACATATATTTTGTTTGACGGG---GAAAAAACGT---TCTTTATTTTTTTAATAAGGTCGCGTCGCGAAAACGGAGCCAAGAACGGGCG-CGGC-GGCGCTCGCG-GAAGCC-GGGGAAACGAGAAAA-GCAAAAGAGGGACGGG--CGCGGGGAGTGACCGGGATGAAGTCAGGCGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGGCATACAGGCGAACAGATGGAGGAAGGAACTTCTTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_spathulatum TTGCAACCCCC--TTTTTGTTTTT--AGAATCG--TTTTTCAGCCACGGGTTGCAATTTTGGTATATTTTATTTTTTTAATGGATATTTTATTTTTTTTAATGGAT-TTTATAATTACTATCGGCATAACACACATTTGGTTTGATGTA---GAAAAAAACG---TTATTTTTTTT--AATAAAGCCGCGTAGCGCAAACAGAAC-AAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTC-TGGGAAACGAGAAAA-GCAAAAGACGGACGGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACTGGGTTGAAACGAGCCAGTGAGGCGACATACGGGTGAACAGGTGGAGGAGGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATATATTTCGGTTGC Symphyotrichum_drummondii TTGCAACCCCC--TTTTTGT-TTT-TCGAATCG--TTTTTCAGCCAAGGGTTGCGATTTTGGTATATTTTATTTTTTTCATGGATATTTTATTTTTTTTAATGGAT-TTTGTAGTTACTATCGGCATAACACACATTTTGTTTGACGGA---GAAAAAAACG---ATATTTTTTTTT-AATAAAGCCGCGTAGCGCAAACAGAAC-AAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTC-TGGGAAACGAGAAAA-GCAAAAGACGGACGGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACATACGGGTGAACAAGTGGAGGAGGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_undulatum TTGCAACCCCC--TTTTTGTTTTT-TCGAATCG--TTTTTCAGCCACGGGTTGCGATTTTGGTATATTTTATTTTTTTTAAGTATATTTTATTTTTTTTAATGGAT-TTTATAATTACTATCGGCATAACACACATTTTGTTTGACGGA---GAAAAAAACG---TTATTTTTTTTTTAATAAAGCCGCGTAGCGCAAACAGAAC-AAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTC-TGGGAAACGAGAAAA-GCAAAAGACGGACGGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACATACGGGAGAACAAGTGGAGGAGGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAAAGAAGGATGTATTTCGGTTGC Symphyotrichum_trilineatum_A TTGCAACCCCC--TTTTTGTATTT-TCGAATCG--TTTTTCAGCCACGGGTTGCGATTTTGGTATATTTTATTTTTTTAATGGATATTTTATTTATTTTAATGGAT-TTTATGCTTACTACCGGCACAACACACATTTTGTTTGACGGA---GAAAAAAACG---TTATTTTTTTTTTAATAAAGCCGCGTAGCGCAAACAGAAC-AAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTC-TGGGAAACGAGAAAA-GCAAAAGACGGACGGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACACACGGGTGAACAAGTGGAGGAGGGAGCTTCATGGGGTAAGGGATAAAAGAATTAAAAGAAGGATGTATTTCGGTTGC Symphyotrichum_moranense_A TTGCAACCCCC--TTTTTGTATTT-TCGAATCG--TTTTTCAGCCACGGGTTGCGATTTTGGTATATTTTATTTTTTTAATGGATATTTTATTTATTTTAATGGAT-TTTATGCTTACTACCGGCATAACACACATTTTGTTTGACGGA---GAAAAAAACG---TTATTTTTTTTTTAATAAAGCCGCGTAGCGCAAACAGAAC-GAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTC-TGGGAAACGAGAAAA-TCAAAAGACGGACGGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACATACGGGTGAACAAGTGGAGGAGGGAGCTTCATGGGGTAAGGGATAAAAGAATTAAAAGAAGGATGTATTTCGGTTGC Symphyotrichum_foliaceum TTGCAACCCCC--TTTTTGTTTTT-TCGAATCG--TTTTTCATCCACGGGTTGCGATTTTGGTATATTTTATTTTTTTGATGTATATTTTATTTTTTTTAATGGAT-TTTATGATTACTATCGGCATAACACACATTTTGTTTGACGGA---GAAAAAA-CG---TTATTTTTTTTTTAATAAAGCCGCGTAGCGCAAACAGAAC-AAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTC-TGGGAAACGAGAAAA-GCAAAAGACGGACGGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACATACGGGTGAACAGGTGGAGGAGGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGAAGTATTTCGGTTGC Symphyotrichum_subspicatum TTGCAACCCCT--TTTTTGTTTTT-TAGAATCG--TTTTTCAGCCACGGGTTGCAATTTTGGTATATTTTATTTTTTTAATGGATATTTTATTTATTTTAATGGAT-TTTATAATTACTATCGGCATAACAAACATTATGTTTGACGGA---GAAAAAAACG---TTATTTTTTTT--AATAAAGCCGCGTAGCGCAAACAGAAC-AAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTA-TGGGAAACGAGAAAA-GCAAAAGACGGACGGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACATACGGGTGAAAAAGTGGAGGAAGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATT-CGGTTGC Symphyotrichum_dumosum TTGCAACCCCC--TTTTTGTTTTT-TCGAATCG--TTTTTCAGCCACGGGTTGCGATTTTGGTATATTTTATTTTTTTAATGGATATTTTATTTTTTTTAATGGAT-TTTATAATTACTATCGGCATAACACACATTTTGTTTGACGGG---GAAAAAAACG---TTATTTTTTTTTTAATAAAGCCGCGTAGCGCAAACAGAAC-AAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTC-TGGGAAACGAGAAAA-GCAAAAGACGGACGGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACATACGGGTGAACAAGTGGAGGAGGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATCTCGGTTGC Symphyotrichum_lateriflorum TTGCAACCCCC--TTTTTGTTTTT-TCGAATCG--TTTTTCAGCCACGGGTTGCGATTTTGGTATATTTTATTTTTTTAATGGATATT-TATTTTTTTTCATGGAT-TTTATAATTACTATCGGCATAACACACATTTTGTTTGACGGA---GAAAAAAACG---TTATTTTTTTCT-AATAAAGCCGCGTAGCGCAAACAGAAA-AAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTA-TGGGAAACGAGAAAA-GCAAAAGACGGACGGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACATACGGGTGAACAAGTGGAGGAGGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_pilosum TTGCAACCCCC--TTTTTGATTTT-TCGAATCG--TTTTTCAGCCACGGGTTGTGATTTTGGTATATTTAATTTTTTTAATGGATATTTTATTTTTTT-AATGGAT-TTTATAATTACTATCGGCATAACACACATTTTGTTTGACCGG---GGAAAAAACG---TTATTTTTTTTTTAATAAAGCCGCGTAGCGCAAACAGAAC-AAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTC-TGGGAAACGAGAAAA-GCAAAAGACGGA-GGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACATACGGGGGAACAAGTGGAGGAGGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_praealtum TTGCAACCCCC--TTTTTGTTTTT-TCGAATCG--TTTTTCAGCCACGGGTTGCGATTTTGGTATATTTTATTTTTTTAATGGATATTTTATTTTTTTTAATGGAT-TTTATAATTACTATCGGCATAACACACATTTTGTTTGACGGA---GAAAAAAAGG---TTATTTTTTTTTTAATAAAGCCGCGTAGCGCAAACAGAAC-AAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTC-TGGGAAACGAGAAAA-GCAAAAGACGGACGGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACAAACGGGTGAACAAGTGGAGGAGGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAAAGAAGGATGTATTTCGGTTGC Symphyotrichum_puniceum TTGCAACCCCC--TTTTTGTTTTT-TCGAATCG--TTTTCCAGCTACGGGTTGCGATTTTGGTATATTTTATTTTTTTAATGGATATTTTATTTTTTTTAATGGAT-TTAATAATTACTATCGGCATAACACACATTTTGTTTGACGGG---GAAAAAAAGG---TTATTTTGTTTT-AATAAAGCC------------------------------------------------------------------------------------------------------GGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACATACGGGTGAACAAGTGGAGGAGGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_retroflexum TTGCAACCCCC--TTTTTGTTTTT-TCGAATCG--TTTTTCAGCCACGGGTTGCGATTTTGGTATATTTTATTTTTTTAAGGTATATTTTATTTTTTTTAATGGAT-TTTATAATTACTATCGGCATAACACACATTTTGTTTGACGGA---GAAAAAAACG---TTATTTTTTTTT-AATAAAGCCGCGTAGCGCAAACAGAAC-AAGAACGGGCGGCGGC-TGCGCTCGCGAAAAGTC-TGGGAAACGAGAAAA-GCAAAAGACGGACGGG--CGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACATACGGGTGAACAAGTGGAGGAGGGAGCTTCCTTGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_divaricatum TTGCAACCCCC--TTTTTGTTTTT-TCGAATCG--TTTTTCAGCCACGGGTTGTGTGTTTGGTATATGTTATTAATTT------------------TTTGATGGAT-TTTATATTTACTATCGTCATAACATGCATTTTGTTTGACGGA----GAAAAACCGTTTTTATTTACTTTT-AATAAAGCCGCGTAGCGGAAACAGAAGCAAGAACGGGCGGCGGC-TGGGCCCGCG-CAAGTA--GGGAAGCGAGAAAA-GCAAAAGCTGG--GGG--CGCGGGTACTGACCGGGATGAAGTAATACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGACATACGGGTGAACAAGTGGGGATGG-AGCTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_tenuifolium TTGCAACCCCC--TTTTTGTTTTT-GTGAATCGGGTTTTTCAGCCAAGGGTTGCGATTTTGGTTTGTTTTATTTTTTT----------------------ATGGAT-TCTATAATTACTATCGCCATAACATATAATTTGTTTGACGGG----AAAAAAACG--TTATTTATTTTTTAAATGAAGCCGCGTCGCGAAAACAGGGCCAAGAACGGGCGGCGGC-GTCGCTCGCG-AAAGTC-GTGGAAACGAGAAAA-GCTACGAGGGACGGGG--CGCGGGGAGTGACCGGGATGAAGTTAGGCGTCCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGGCAAACAGGTGAAGAGATGGAAAAAGAAACTTCTTGGGGTAAGGAATAAAAGAATTAAACGAAGTATGTATTTCGGTTGC Symphyotrichum_patens TTGCAACCCCC--TTTTTGTTTTT-GCGAATCG--TTTTTCAGCCACGGGCTGCGCTTTTGGTTTATTTTATTTTTTT--------------------TAATGGAT-TTTATAATTACTATCGTCATAACACATATTTTGATTGACGGACCAGAAAAAAACGTTTTGTTTTTATTTTTAATAAAGCCGCGTCACAGAGACAGAACCAAGGGCGGGCGGCGC-------TCGCG-AAAGTC-GGGGAAACGAGAAAA-GCAAAAGACGGGCGGG--TGGGGGAAGTGACCGGGATGAAGTAAGACGTTCGGAGAGGATACCGGGCTGAAACGAGCCAGTGAGGCGGCATACGGGTGAACAAATGGAGGAGGGAACTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_novaeangliae TTGCAACCCCC--TTTTTGCTTTT-GCGAATCG--TTTTTCAGCCACGGGCTGAGCTTTTGGTTTATTTTATTTTTTT---------------------TATGGAT-TTTATAATTACTATCGTCATAACACATATTTTGTTTGACGGACCAGAAAAAAACGTTTTGTTTTTATTTTTAACAACGCCGCGTCACAGAGACAGAACCAAGAGCGGGCGGCTC-------CCGCG-AAAGTC-GGGGAAACGAGAAAA-GCAAAAGACAGGCGGG--CGGGGGGAGTGACCGGGATGAGGTAAGACGTTCGGAGGGGATGCCGGGTTGAAACGAGCCAGTGAGGCGGCATACGGGCGAACAAATGGAGGAGGGAACTTCCTGTGGTAAAGAATAAAAGAATAAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_oblongifolium TTGCAACCCCC--TTTTTGTTTTT-GCGAATCG--TTTTTCAGCCACGGGCTGCGCTTTTGGTTTATTTTATTTTTTT--------------------TTATGGTT-TTTATAATTACTATCGTCATAACACATATTTTGTTTGACGGACCAGAAAAAAACGTTTTGTTTTTGTTTTTAATAAAGCCGCGTCACAGAGACAGAACCAAGGGTGGGCGGCGC-------CCGCG-AAAGTC-GGGGAAACGAGAAAA-GCAAAAGACGGGCGGG--CTGGGGGAGTGACCGGGATGAGGTAAGACGTTCGGAGGGGATGCCGGGTTGAAACGAGCGAGTGAGGCGGCATACGGGTGAACAAATGGAGGAGGGAACTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_concolor TTGCAACCCCC--TTTTTGTTTTT-GCGAATCG--TTTTTCAGCCACGGGCTGCGCTTTTGGTTTATTTTATTTTTTT--------------------TTATGGAT-TTTATAATTACTATCGTCATAACACATATTTTGTTTGACGGACCAGAAAAAAACGTTTTGTTTTTATTTTTAATAAAGCCGCGTCACAGAGACAGAACCAAGGGCGGGCGGCGC-------TCGCG-AAAGTC-GGGGAAACGAGAAAA-GCAAAAGACGGGCGGG--CGGGGGGAGTGACCGGGATGAAGTAAGACGTTCGGAGAGGATACCGGGTTGAAACGAGCCAGTGAGGCGTCATACGGGTGAACAAATGGAGGAGGCAACTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_pratense TTGCAACCCCC--TTTTTGTTTTT-GCGAATCG--TTTTTCAGCCACGGGTTGCGCTTTTGGTTTATTTTATTTTTTT-------------------TTAATGGAT-TTTATAATTACTATCGTCATAACATATATTTTGTTCGACGGAGAAAAAAAAA-CGTTTTGTTTTTATTTTTAATAAAGCCGCGTCGTAGAGACAGAACCAAGGGCGGGCGGCGC-------TCGCG-AAAGTC-GGGGAAACGAGAGAA-GAAAAAGACGGGCGGG--CGGGGGGA--------GATGAAGTAAGACGTTCGGAGAGTATACCGGGTTGAAACGAGCCAGTGAGGCGGCATACGGGTGAACAAATGGAGGAGGGAACTTACTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Symphyotrichum_ericoides TTGCAACCCCC--TTTTTGTTTTT-GCGAATCG--TTTTTCAGCCACGGGTTTTGCTTTTGCTTTATTTTATCTTCTT---------------------AATGGAT-TTTATAATTACTATCGTCATAACATATATTTTGTTTGACGGAGAAAAAAAAAACGTTTTGTTTTAATTTTTAATAAAGCCGCGTCGTAGAGACAGAACCAAGGGCAGGCGGCGC-------TCGCG-AAAGTC-GGGGAAACGAGAAAA-GAAAAAGACGGGCGGG--CGGGGGGAGTGACCGGGATGAAGTAAGACGCTCGGAGAGGTTACCGGGTTGAAACGAGCCAGTGAGGCGGCATACGGGTGAACAAATGGAGGAGGGAACTTACTGAGGTAAGGGATAAAAGAATTAAACGAATGATGTATTTCGGTTGC Symphyotrichum_adnatum TTGCAACCCCC--TTTTTGTTTTT-GAGAATCG--TTTTTCAGCCACGGGCTGCGCTTTTGGTTTATTTTATTTTTTT---------------------AATGGAT-TTTATAATTACTATCGTCATAACACATGTTTTGTTTGACGGACCAGAAAAAAACGTTTTGTTTTTATTTTTAATAAAGCCGCGTCACAGAGACAGAACCAAGGGCGGGCGGCGC-------TCGCG-AAAGTC-GGGGAAACGAGAAAA-GCAAAAGACGGGCGGG--CGGGGGGAGTGACTGGGATGAGGTAAGACGTTCGGAGGGGATGCCGGCTTGAAACGAGCCAGTGAGGCGGCATACGGGTGAACAAATGGAGGAGGGAACTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Almutaster_pauciflorus TTGCAACCCCC--TTTTTGTTTTT-GGGAATCG--TTTTTCAGCCACGGGTTGCGCTTTTGGTTTATTTTAA--TTTT------------------TTTAATGGAT-TTTATAACGACTAGGGTCATAACATATACTTTGTTTGACGGAGAAAAAAAAA-CGTTTTGTTTTTATTTTTAATAAAGCCGCGTCGCGGAGACAGAACCAAGGCCTGGCGGCGG-------TCGCG-AAAGTC-GTGGAAACGAGAAAA-GCAAAAGACGGGCGGG--CGCGGGGAGTGACCGGGATGAAGTAAGACGTTCGGAGAGGATACCGGGCTGAAACGAGCCAGTGAGGCGGCATACGGGTGAACAAATGGAGAATGGAACTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Psilactis_brevilingulata TTGCAACCCCC--TTTTTGTTTTT-GCGAATCG--TTTTTCAGACCCGGGTTGCGGTTTCGGTTTATTTTA--TTTTT------------------TTTAATGGAT-TTTAAAATTACTATGGTCATAACATATATTTTGTTTGACGGAGAAAAGAAA--CGTTTTGTTTT-GTTTTTAATAAAGCCGCGTCGCATAGACAGAACCAAGGGCGGGCGGCGC-------TCGCG-AAAGTC-GGGGAAACGAGAAAA-GCAAAAGACGGGCGGG--CGGGGGGAGTGACTGGGGTGAAGTAAGACGTTCGGAGAGGATACCGGGCTGAAACGAGCCAGTGAGGCGGCATACGGGTGAACAAATGGAGGAGGGAAGTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Psilactis_asteroides TCGCAACCCCC--TTTTTGTTTTT-GCGAATCG--TTTTTCAGCCAAGGGTTGCGATTTTGGTTTATTTTA--TTTTT------------------TT-AATGGAT-TTTAAAATTAGTATCGTCATAACATATATTTTGTTTGACGAAGAAAAAAAAAAGGTTTTGTTTTTATTTTTAATAAAGCCGCGTCGCAGAGACAGAACCAAGGGCGGGCGGCGC-------TCGCG-AAAGCC-GGGGAAGCGAGAAAA-GAAAAAGACGGGCGGG--CGGGGG-AGTGATCGGGATGAAGTAAGACGTTCGGATAGGCTACCGGGCTGAAACGAGCCAGTGAGGCGGCATACGGGTGGACAACTGAAGGAGGGAACTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGTATGTATTTCGGTTGC Psilactis_tenuis TTGCAACCCCC--TTTTTGTTTTT-GCGAATCG--ATTTTCAGCCACGGGTTGCGCTTTTGGTTTATTTTAATTATTT------------------TTAAATGGAA-TTTATAATTACTATGGTCATTACATACACTTTGTTTGCCGGAGAAAAAA----CG-----------ATTTTAATAAAGTCGCGTCGCAGAGACAGAACCAATGGCGGCCGGCGG-------CCGCG-AAAGCC-GTGGAAACGAGAAAA-GCAAAAAACGGAGGGG--CGCGGGGAGTGACCGGGATGAAGTAAGACGTTCGGAGAGGATACCGGGCTGAAACGAGCCAGTGAGGCGGCATACGGGTGAACAAACGAAGGAGGGAACTTCATGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Psilactis_odysseus TTGCAACCCTC--TTTTTGTTTTT-GCGAATCG--TTTTTCAGCCACGGGTTGCGGCTTTGGTTTGTTCTA--TTTTT------------------TT-AATGGAT-TTTAAAATTACTATGGTCATAACATATATTTTGTTTGACGGAGAAAAAAAAC-CGTTTTGTTTTTATTTTTAGTAGAGACGCGTCGCAGAGACGGAACCAAGGGCGGGCGGGGC-------TCGCG-AAAGTC-GGGGAAACGAGAAAAAGCAAAAGACGGGCGGG--CGGGGGGAGTGACCGGGATGAAGTAAGACGTTCGGAGAGGATACCGGGCTGAAACGAGCCAGTGAGGCGGCATACGGGCGAACAAATGGAGGCGGGAACTTGCTGGGGGAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGC Herrickia_kingii_1 ACACAA Herrickia_kingii_2 ACACAA Herrickia_kingii_3 ACACAA Herrickia_kingii_4 ACACAA Canadanthus_modestus ACACAA Symphyotrichum_gypsophilum ACACAA Ampelaster_carolinianus ACACAA Symphyotrichum_spathulatum CACCAA Symphyotrichum_drummondii CACCAA Symphyotrichum_undulatum CACCAA Symphyotrichum_trilineatum_A CACCCA Symphyotrichum_moranense_A CACCCA Symphyotrichum_foliaceum CACCAA Symphyotrichum_subspicatum CACCAA Symphyotrichum_dumosum CACCAA Symphyotrichum_lateriflorum CACCAA Symphyotrichum_pilosum CACCAA Symphyotrichum_praealtum CACCAA Symphyotrichum_puniceum CACCAA Symphyotrichum_retroflexum CACCAA Symphyotrichum_divaricatum ACACAA Symphyotrichum_tenuifolium ACACAA Symphyotrichum_patens ACAAAC Symphyotrichum_novaeangliae ACAAAC Symphyotrichum_oblongifolium ACAAAC Symphyotrichum_concolor ACAAAC Symphyotrichum_pratense ACAAAC Symphyotrichum_ericoides ACAAAC Symphyotrichum_adnatum ACAAAC Almutaster_pauciflorus ACAAAC Psilactis_brevilingulata ACAAAC Psilactis_asteroides ACAAAC Psilactis_tenuis ACAAAC Psilactis_odysseus ACAAAC ; eliminate 1 -25 27 -63 65 -100 154 -178 213 -223 225 -241; END; BEGIN TREES; Title 'Trees from "Symphyotrichinae 5S condensed"'; LINK Taxa = Taxa; TRANSLATE 1 Herrickia_kingii_1, 2 Herrickia_kingii_2, 3 Herrickia_kingii_3, 4 Herrickia_kingii_4, 5 Canadanthus_modestus, 6 Symphyotrichum_gypsophilum, 7 Ampelaster_carolinianus, 8 Symphyotrichum_spathulatum, 9 Symphyotrichum_drummondii, 10 Symphyotrichum_undulatum, 11 Symphyotrichum_trilineatum_A, 12 Symphyotrichum_moranense_A, 13 Symphyotrichum_foliaceum, 14 Symphyotrichum_subspicatum, 15 Symphyotrichum_dumosum, 16 Symphyotrichum_lateriflorum, 17 Symphyotrichum_pilosum, 18 Symphyotrichum_praealtum, 19 Symphyotrichum_puniceum, 20 Symphyotrichum_retroflexum, 21 Symphyotrichum_divaricatum, 22 Symphyotrichum_tenuifolium, 23 Symphyotrichum_patens, 24 Symphyotrichum_novaeangliae, 25 Symphyotrichum_oblongifolium, 26 Symphyotrichum_concolor, 27 Symphyotrichum_pratense, 28 Symphyotrichum_ericoides, 29 Symphyotrichum_adnatum, 30 Almutaster_pauciflorus, 31 Psilactis_brevilingulata, 32 Psilactis_asteroides, 33 Psilactis_tenuis, 34 Psilactis_odysseus; TREE 5Scondensedtree = ((((1,4),3),2),((5,6),((7,22),(((8,13),9,(10,(11,12),18),14,(15,17,19),16,20),21)),((23,(24,25,29),26),((27,28),(30,33),31,32,34)))); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 430; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 430; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 430; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1314463547948; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5456996169087150034; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2095308608437556574; mqVersion 274; checksumv 0 2 3726289344 null getNumChars 430 numChars 430 getNumTaxa 34 numTaxa 34 short true bits 15 states 15 sumSquaresStatesOnly 304038.0 sumSquares 304038.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 392; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5456996169087150034 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5456996169087150034; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5456996169087150034 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 822.1314287302445.5297293750867458652; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2095308608437556574 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;