#NEXUS [written Tue Feb 14 19:57:55 JST 2012 by Mesquite version 2.74 (build 550) at inf060-180/10.165.60.180] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=23; TAXLABELS 'Octaviania nonae Amami_oshima_1 JN257985' 'Octaviania nonae Amami_oshima_2 JN257986' Octaviania_nonae_Hiroshima_JN257989 Octaviania_nonae_Mie_JN257987 Octaviania_nonae_Hyogo_JN257988 Octaviania_nonae_Oita_JN257990 'Octaviania decimae Oita_1 JN257993' Octaviania_decimae_Aichi_EU414289 'Octaviania decimae Nara_1 EU414291' 'Octaviania decimae Kyoto_2 JN257992' 'Octaviania decimae Kyoto_1 JN257991' 'Octaviania decimae Oita_2 JQ619187' 'Octaviania decimae Nara_2 JQ619166' 'Octaviania mortae Kyoto_2 JN257996' 'Octaviania mortae Kyoto_1 JN257995' Octaviania_mortae_Tottori_JN257994 Octaviania_mortae_Ehime_JQ619167 'Octaviania celatifilia Nara_1 JN257997' 'Octaviania celatifilia Nara_3 JQ619168' 'Octaviania celatifilia Nara_2 JQ619169' Octaviania_asterosperma_Spain_JN257998 Octaviania_asterosperma_EU784378 Octaviania_asterosperma_EU784379 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=735; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Octaviania nonae Amami_oshima_1 JN257985' TCATTATTG-AA-TTAA-----AAGATTGTTGCTGGCT------TT---TAGGCA-TGTGCACATCTT-A-TTACCMTCT-CACACCTGTGCATCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-TATGTAT--AAAATAAAATWAAAAAATT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAACC---TAAT--ATTTCA----TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCAT--GTA----------TTGACGTGCACGGCCTGTCTCCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTCA-------ATTT---TTATTAACA----TA--T------------------------------------------TTGAC----AAT-----TTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCAGTC 'Octaviania nonae Amami_oshima_2 JN257986' TCATTATTG-AA-TTAA-----AAGATTGTTGCTGGCT------TT---TAGGCA-TGTGCACATCTT-A-TTACCATCT-CACACCTGTGCATCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-TATGTAT--AAAATAAA--WAAAAAATT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAACC---TAAT--ATTTCA----TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCAT--GTA----------TTGACGTGCACGGCCTGTCTCCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTCA-------ATTT---TTATTAACA----TA--T------------------------------------------TTGAC----AAT-----TTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCAGTC Octaviania_nonae_Hiroshima_JN257989 TCATTATTG-AA-TTAA-----AAGATTGTTGCTGGCT------TTTAAAAGGCA-TGTGCACATCTT-A-TTACCATCT-CACACCTGTGCATCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-TATGTAT--A----AAA-------A-TT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAACC---TAAT--ATTTCA----TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCAT--GTA----------TTGACGTGCACGGCCTGTCTCCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTCA-------ATWTTTTWTATTAACA----TA--T------------------------------------------TTGAC----AAT-----TTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAAT---------------- Octaviania_nonae_Mie_JN257987 TCATTATTG-AA-TTAA-----AAGATTGTTGCTGGCT------TTTAAAAGGCA-TGTGCACATCTT-A-TTACCATCT-CACACCTGTGCATCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-TATGTAT--A----AAA-------A-TT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAACC---TAAT--ATTTCA----TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCAT--GTA----------TTGACGTGCACGGCCTGTCTCCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTCA-------ATTTTTTTTATTAACA----TA--T------------------------------------------TTGAC----AAT-----TTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCAGTC Octaviania_nonae_Hyogo_JN257988 TCATTATTG-AA-TTAA-----AAGATTGTTGCTGGCT------TTTAAAAGGCA-TGTGCACATCTT-A-TTACCATCT-CACACCTGTGCATCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-TATGTAT--A----AAA-------A-TT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAACC---TAAT--ATTTCA----TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCAT--GTA----------TTGACGTGCACGGCCTGTCTCCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTCA-------ATTTTTTTTATTAACA----TA--T------------------------------------------TTGAC----AAT-----TTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCAGTC Octaviania_nonae_Oita_JN257990 TCATTATTG-AA-TTAA-----AAGATTGTTGCTGGCT------TTTAAAAGGCA-TGTGCACATCTT-A-TTACCATCT-CACACCTGTGCATCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-TATGTAT--A----AAA-------A-TT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAACC---TAAT--ATTTCA----TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCAT--GTA----------TTGACGTGCACGGCCTGTCTCCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTCA-------ATTTTTTTTATTAACA----TA--T------------------------------------------TTGAC----AAT-----TTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCAGTC 'Octaviania decimae Oita_1 JN257993' TCATTAAAG--A-TTAA-----TAGATTGTTGCTGGCTAGGTGATT--GTAG-CA-TGTGCACATCTTTA-TTACCATCTTCACACTTGTGCACCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-CAAGAATGTTTTCT----------A-TT-A-TACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAATC-------------------TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTGTCCTTAAATGTATTAGCAAGTCAA-GTCTTGACGTGCACGGCCTGTCTTCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTTATTAGGAAACTTGC-TTAT-AATTAT--T--GTGTAA---------------------------------------CCAA---AAAT----TTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCAGTC Octaviania_decimae_Aichi_EU414289 ------AAG--A-TTAA-----TAGATTGTTGCTGGCTAGGTGATT--CTAG-CA-TGTGCACATCTTTA-TTACCATCTTCACACTTGTGCACCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-CAAGAATGTTTTCT----------A-TT-A-TACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAATC-------------------TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTGTCCTTAAATGTATTAGCAAGTCAA-GTCTTGACGTGCACGGCCTGTCTTCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTTATTAGGAAACTTGC-TTAT-AATTAT--T--GTGTAA---------------------------------------TCAA---AAAT----TTTGACCTC--------------------------------------------------------------------------------------------------------------------------- 'Octaviania decimae Nara_1 EU414291' ------AAG--A-TTAA-----TAGATTGTTGCTGGCTAGGTGATT--CTAG-CA-TGTGCACATCTTTA-TTACCATCTTCACACTTGTGCACCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-CAAGAATGTTTTCT----------A-TT-A-TACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAATC-------------------TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTGTCCTTAAATGTATTAGCAAGTCAA-GTCTTGACGTGCACGGCCTGTCTTCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTTATTAGGAAACTTGC-TTAT-AATTAT--T--GTGTAA---------------------------------------TCAA---AAAT----TTTGACCTC--------------------------------------------------------------------------------------------------------------------------- 'Octaviania decimae Kyoto_2 JN257992' TCATTAAAG--A-TTAA-----TAGATTGTTGCTGGCTAGGTGATT--CTAG-CA-TGTGCACATCTTTA-TTACCATCTTCACACTTGTGCACCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-CAAGAATGTTTTCT----------A-TT-A-TACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAATC-------------------TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTGTCCTTAAATGTATTAGCAAGTCAA-GTCTTGACGTGCACGGCCTGTCTTCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTTATTAGGAAACTTGC-TTAT-AATTAT--T--GTGTAA---------------------------------------CCAA---AAAT----TTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCAGTC 'Octaviania decimae Kyoto_1 JN257991' TCATTAAAG--A-TTAA-----TAGATTGTTGCTGGCTAGGTGATT--CTAG-CA-TGTGCACATCTTTA-TTACCATCTTCACACTTGTGCACCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-CAAGAATGTTTTCT----------A-TT-A-TACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAATC-------------------TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTGTCCTTAAATGTATTAGCAAGTCAA-GTCTTGACGTGCACGGCCTGTCTTCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTTATTAGGAAACTTGC-TTAT-AATTAT--T--GTGTAA---------------------------------------CCAA---AAAT----TTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGG-------------------------------------------------------------------------- 'Octaviania decimae Oita_2 JQ619187' TCATTAAAG--A-TTAA-----TAGATTGTTGCTGGCTAGGTGATT--CTAG-CA-TGTGCACATCTTTA-TTACCATCTTCACACTTGTGCACCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-CAAGAATGTTTTCT----------A-TT-A-TACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAATC-------------------TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTGTCCTTAAATGTATTAGCAAGTCAA-GTCTTGATGTGCACGGCCTGTCTTCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTTATTAGGAAACTTGC-TTAT-AATTAT--T--GTGTAA---------------------------------------CCAA---AAAT----TTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCAGTC 'Octaviania decimae Nara_2 JQ619166' TCATTAAAG--A-TTAA-----TAGATTGTTGCTGGCTAGGTGATT--CTAG-CA-TGTGCACATCTTTA-TTACCATCTTCACACTTGTGCACCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-CAAGAATGTTTTCT----------A-TT-A-TACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCCAAGGAGTATGCCTGTTTGAGTGTCATTTAATTATCAATC-------------------TTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTGTCCTTAAATGTATTAGCAAGTCAA-GTCTTGACGTGCACGGCCTGTCTTCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGCGTTATTAGGAAACTTGC-TTAT-AATTAT--T--GTGTAA---------------------------------------TCAA---AAAT----TTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCAGTC 'Octaviania mortae Kyoto_2 JN257996' TCATTATTG-AATTTAAATTTAAAGATTGTTGCTGGCTAGGTGATT--CTAG-CA-TGTGCACATCTT-A-CTACCATCT-CACACCTGTGCACCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-TAAGAATG-T-TTT----------ATTTTA-TACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCAAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAACCTAGTAATTGATT----TTATTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCATTAGTGAGTGAA-GTCTTGACATGCACGGCCTGTCTTCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGTGTCATTAGGAAGCTTGC-TTAT-AACAAT--TA-GT--AT-------------------------------------TTTGAC----AAT-----TTGACCTCAAATCAGGTAGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCAGTC 'Octaviania mortae Kyoto_1 JN257995' TCATTATTG-AATTTAAATTTAAAGATTGTTGCTGGCTAGGTGATT--CTAG-CA-TGTGCACATCTT-A-CTACCATCT-CACACCTGTGCACCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-TAAGAATG-T-TTT----------ATTTTA-TACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCAAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAACCTAGTAATTGATT----TTATTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCATTAGTGAGTGAA-GTCTTGACATGCACGGCCTGTCTTCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGTGTCATTAGGAAGCTTGC-TTAT-AACAAT--TA-GT--AT-------------------------------------TTTGAC----AAT-----TTGACCTCAAATCAGGTAGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCAGTC Octaviania_mortae_Tottori_JN257994 TCATTATTG-AATTTAAATTTAAAGATTGTTGCTGGCTAGGTGATT--CTAG-CA-TGTGCACATCTT-A-CTACCATCT-CACACCTGTGCACCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-TAAGAATG-T-TTT----------ATTTTA-TACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCAAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAACCTAGTAATTGATT----TTATTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCATTAGTGAGTGAA-GTCTTGACATGCACGGCCTGTCTTCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGTGTCATTAGGAAGCTTGC-TTAT-AACAAT--TA-GT--AT-------------------------------------TTTGAC----AAT-----TTGACCTCAAATCAGGTAGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA------------------------------------------------------------------------- Octaviania_mortae_Ehime_JQ619167 TCATTATTG-AATTTAAATTTAAAGATTGTTGCTGGCTAGGTGATT--CTAG-CA-TGTGCACATCTT-A-CTACCATCT-CACACCTGTGCACCTATTGTAGATTCCTAGTGGATCTATGT-TTTT-------ATTACACTA----TATTGTATGTCC-TAAGAATG-T-TTT----------ATTTTA-TACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCAAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAACCTAGTAATTGATT----TTATTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCATTAGTGAGTGAA-GTCTTGACATGCACGGCCTGTCTTCGGTGATAAATGATCCGTTGGTCCGGGCTGGAAGTGTCATTAGGAAGCTTGC-TTAT-AACAAT--TA-GT--AT-------------------------------------TTTGAC----AAT-----TTGACCTCAAATCAGGTAGGATTACCCGCTGAACTTAAGCATATCAATAA--------------------------------------------------------------------------------- 'Octaviania celatifilia Nara_1 JN257997' TCATTA-AG-GA--TAA------AGAT-G----------------------GGCATTGTGCACATCTT-A-TTACCATCT-CACACCTGTGCACCTATTGTAGATTCCTAGTGGATCTATGTTTTTTTTTT---ATTACACTC----TATTGTATGGCC-TATGAAT--A----AAA-------A-TT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCAAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAACC---TAAT-GGT-----TTATTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCATTAGTGAG-CAAAGTCTTGACGTGCACGGCCTGTCTCCGGTGATAAATGAACCGTTGGTCCGGGCTGGAAGCGTCATTAGGAAGCTTGC-TTAT-AACCC-ACTA--T---------------------------------------------AC-----AT----TTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTTGAATCTGGCAGTC 'Octaviania celatifilia Nara_3 JQ619168' TCATTA-AG-GA--TAA------AGAT-G----------------------GGCATTGTGCACATCTT-A-TTACCATCT-CACACCTGTGCACCTATTGTAGATTCCTAGTGGATCTATGTTTTTTTTT----ATTACACTC----TATTGTATGGCC-TATGAAT--A----AAA-------A-TT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCAAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAACC---TAAT-GGT-----TTATTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCATTAGTGAG-CAAAGTCTTGACGTGCACGGCCTGTCTCCGGTGATAAATGAACCGTTGGTCCGGGCTGGAAGCGTCATTAGGAAGCTTGC-TTAT-AACCC-ACTA--T---------------------------------------------AC-----AT----TTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTTGAATCTGGCAGTC 'Octaviania celatifilia Nara_2 JQ619169' TCATTA-AG-GA--TAA------AGAT-G----------------------GGCATTGTGCACATCTT-A-TTACCATCT-CACACCTGTGCACCTATTGTAGATTCCTAGTGGATCTATGTTTTTTTTT----ATTACACTC----TATTGTATGGCC-TATGAAT--A----AAA-------A-TT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCAAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAACC---TAAT-GGT-----TTATTAGGATTGGACTTGGGATTTGCTGGCTTTGAGTAGTCAGCTATCCTTAAATGCATTAGTGAG-CAAAGTCTTGACGTGCACGGCCTGTCTCCGGTGATAAATGAACCGTTGGTCCGGGCTGGAAGCGTCATTAGGAAGCTTGC-TTAT-AACCC-ACTA--T---------------------------------------------AC-----AT----TTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTTGAATCTGGCAGTC Octaviania_asterosperma_Spain_JN257998 TCATTATAGTAACAACA-------GATTGTCGCTGGCTAGGTGATT--CTAG-CA-TGTGCACGTC-T-ACCTA--AATTTCACACCTGTGCACCTATTGTAGATCTTTACT-GATCTATGT--TT-----AACCTCACACAACAAACATTGTATGGCATTA-GAATGTATTTTAAA-------G-TT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCTTCGGTATTCCGAAGAGCATGCCTGTTTGAGTGTCATTTTATTATCAACC---TAAT--ATT-CATTTATTAGGCTTGGACTTGGGATTTGCTGGCTTCGAGTAGTCAGCTATCCTTGAATGTATTAGCAAGTGAAA-TCTTGACGTGCACGGCCTCT-GACG-TGATAA-TGATC-GTCGGT--GGGCTGGAAGCGTTATCAGGAAGCTTGC-TTCT-AAA---GCAAAGT--ATTGGCATGCACGGCCTTTTACAGGGCTGGAAGTGTTGA--TCACTAC---TACACTTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTTGAATCTGGCGGTC Octaviania_asterosperma_EU784378 TCATTATAGTAACAACA-------GATTGTCGCTGGCTAGGTGATT--CTAG-CA-TGTGCACGTC-T-ACCTA--AATTTCACACCTGTGCACCTATTGTAGATCTTTACT-GATCTATGT--TT-----AACCTCACACAACAAACATTGTATGGCATTA-GAATGTATTTTAAA-------G-TT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCTTCGGTATTCCGAAGAGCATGCCTGTTTGAGTGTCATTTTATTATCAACC---TAAT--ATT-CATTTATTAGGCTTGGACTTGGGATTTGCTGGCTTCGAGTAGTCAGCTATCCTTGAATGTATTAGCAAGTGAAA-TCTTGACGTGCACGGCCTCT-GACG-TGATAA-TGATC-GTCGGT--GGGCTGGAAGCGTTATCAGGAAGCTTGC-TTCT-AAA---GCAAAGT--ATTGGCATGCACGGCCTTTTACAGGGCTGGAAGTGTTGA--TCACTAC---TACACTTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCA-TA---------------------------------------------------------------------------------- Octaviania_asterosperma_EU784379 TCATTATAGTAACAACA-------GATTGTCGCTGGCTAGGTGATT--CTAG-CA-TGTGCACGTC-T-ACCTA--AATTTCACACCTGTGCACCTATTGTAGATCTTTACT-GATCTATGT--TT-----AACCTCACACAACAAACATTGTATGGCATTA-GAATGTATTTTAAA-------G-TT-ATTACAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCTTCGGTATTCCGAAGAGCATGCCTGTTTGAGTGTCATTTTATTATCAACC---TAAT--ATT-CATTTATTAGGCTTGGACTTGGGATTTGCTGGCTTCGAGTAGTCAGCTATCCTTGAATGTATTAGCAAGTGAAA-TCTTGACGTGCACGGCCTCT-GACG-TGATAA-TGATC-GTCGGT--GGGCTGGAAGCGTTATCAGGAAGCTTGC-TTCT-AAA---GCAAAGT--ATTGGCATGCACGGCCTTTTACAGGGCTGGAAGTGTTAA--TCACTAC---TACAC-TTGACCT-AA------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 735; END; BEGIN TREES; Title 'Trees from "Octa_spp_Net7s_from_Turmalinea_ITS_dataset15short(2)NJ.treb"'; LINK Taxa = Taxa; TRANSLATE 1 'Octaviania nonae Amami_oshima_1 JN257985', 2 'Octaviania nonae Amami_oshima_2 JN257986', 3 Octaviania_nonae_Hiroshima_JN257989, 4 Octaviania_nonae_Mie_JN257987, 5 Octaviania_nonae_Hyogo_JN257988, 6 Octaviania_nonae_Oita_JN257990, 7 'Octaviania decimae Oita_1 JN257993', 8 Octaviania_decimae_Aichi_EU414289, 9 'Octaviania decimae Nara_1 EU414291', 10 'Octaviania decimae Kyoto_2 JN257992', 11 'Octaviania decimae Kyoto_1 JN257991', 12 'Octaviania decimae Oita_2 JQ619187', 13 'Octaviania decimae Nara_2 JQ619166', 14 'Octaviania mortae Kyoto_2 JN257996', 15 'Octaviania mortae Kyoto_1 JN257995', 16 Octaviania_mortae_Tottori_JN257994, 17 Octaviania_mortae_Ehime_JQ619167, 18 'Octaviania celatifilia Nara_1 JN257997', 19 'Octaviania celatifilia Nara_3 JQ619168', 20 'Octaviania celatifilia Nara_2 JQ619169', 21 Octaviania_asterosperma_Spain_JN257998, 22 Octaviania_asterosperma_EU784378, 23 Octaviania_asterosperma_EU784379; TREE 'PAUP 1+' = ((((1:-1.7E-4,(2:-3.1E-4,(((((7:6.3E-4,((((8:8.4E-4,9:0.00118)950:0.00202,11:0.0)819:0.00187,10:-0.00187)495:0.00101,12:7.5E-4)355:9.7E-4)535:0.0014,13:0.0)1000:0.01983,(21:-0.00542,(22:-0.00229,23:0.0041)1000:0.00542)1000:0.06977)461:0.00375,((18:0.0,19:0.0)988:0.0,20:0.0)988:0.01068)346:0.00179,((14:-0.0018,(16:-2.3E-4,17:2.3E-4)1000:0.0018)997:9.8E-4,15:-9.8E-4)1000:0.01449)1000:0.0152)389:2.1E-4)804:0.00184,4:0.0)352:0.0,5:0.0)335:0.0,3:0.0,6:0.0)TRICHOTOMY[% ] [%unrooted = on ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 735; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 735; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1329217075963; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5233316329068887029; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6462096586515786329; mqVersion 274; checksumv 0 2 4032215885 null getNumChars 735 numChars 735 getNumTaxa 23 numTaxa 23 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 347947.0 sumSquares 1.38350580552822E19 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 649; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5233316329068887029 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5233316329068887029; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 582; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5233316329068887029 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 960.1329215184239.66009444276673463; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 582; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.coalesce.InsertNode.InsertToolExtra.InsertNode; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((21:-0.00542,(22:-0.00229,23:0.0041)1000:0.00542)1000:0.034885,((13:0.0,(7:6.3E-4,(12:7.5E-4,(10:-0.00187,(11:0.0,(8:8.4E-4,9:0.00118)950:0.00202)819:0.00187)495:0.00101)355:9.7E-4)535:0.0014)1000:0.01983,((20:0.0,(18:0.0,19:0.0)988:0.0)988:0.01068,((15:-9.8E-4,(14:-0.0018,(16:-2.3E-4,17:2.3E-4)1000:0.0018)997:9.8E-4)1000:0.01449,(2:-3.1E-4,(1:-1.7E-4,(4:0.0,(5:0.0,(3:0.0,6:0.0)TRICHOTOMY:0.0)335:0.0)352:0.00184)804:2.1E-4)389:0.0152)1000:0.00179)346:0.00375)461:0.034885)<> < setBetweenBits = selected >;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6462096586515786329 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 109; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 582; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;