#NEXUS



BEGIN DATA;
	DIMENSIONS  NTAX=19 NCHAR=591;
	FORMAT DATATYPE=DNA  MISSING=? GAP=- ;
MATRIX

	Lanthanotus_borneensis						CAAAAATGTTGGTGAAAATCCCTCCCCTGCTAATGAGCCCAACCATTAATCTTATCCTACTTTCAAGCCTGGCAACCGGCACAATCCTTACACTATCCAGCTACCACTGGATATTTGCATGAATCGGCCTAGAACTGAACACACTAGCTATCGTACCAATCATATCAAAAGCCCACCACCCACGGGCAACAGAAGCCGCAACAAAATATTTCCTCGTCCAAGCCGCTGCATCATCAATAGTCCTATTTTCTGCACTAATTAATGCACAATCCACGGGATTGTGGGACATCACACAGCTCTCAAACGAAGCTGCAAAAATCATACTAACAACTGCACTCTCCATAAAACTAGGACTGGTCCCAATACACTTCTGATTACCAGAAGTCCTCCAAGCCATGCCCATTTTAACCATATTAATTATTACAACCTGACAAAAACTTGCCCCAACAACCCTGCTCCTATTAATCTGAGACCAGATTCCCACCTACCCTATTGCCACAATCGGCTGGCTATCCATCCTTATCGGAGGACTTGGCGGCTTAAACCAAACACAGTTACGAAAAATAATAGCCTACTCCTCCATCGCCCACG
	Varanus_exanthematicus_MVZ238934			???????????????CAAACCTTCCTTCACTAATCAACCCAACCATCAATTTTATTCTCCTCTTCAGCATAATTCTAGGGACTGTCCTAACAATAATCAGTCACCACTGAGTACTGGCATGACTAGGATTAGAACTAAACACCCTAGCCATCATTCCCATTATTTCAAAATCCCACCACCCACGAGCAATTGAAGCTACAACAAAATACTTCTTGATTCAAGCTGCTAGTTCTGCCCTTATTCTATTCTCAGGAATCATCAATGCACACCTTCACGGAACATGAGACATCTCTCAGCTTTCAGACACAACAACTAAAACTCTGCTAATATCCGGCTTAGCCACTAAATTAGGCCTAGCTCCTATACATTTCTGATTACCTGACGTAATTCAAGGCATTCCCATGCTTACAGCCCTAATCATCACCACATGACAAAAAATCGCCCCCATAGCCCTTCTTATTATAACCGCCAACCTTCTTCCAACCTCCATCACCCTCACAATAGGAATTACATCAACAATTATCGGCGGACTTGGCGGCCTAAATCAAACCCAACTTCGAAAAATAATAGCCTATTCCTCAATCGCC????
	Varanus_exanthematicus_MVZ238935			?????????????????????????????????????????????TCAATTTTATTCTCCTCTTCAGCATAATTCTAGGGACTGTCCTAACAATAATCAGTCACCACTGAGTACTGGCATGACTAGGATTAGAACTAAACACCCTAGCCATCATTCCCATTATTTCAAAATCCCACCACCCACGAGCAATTGAAGCTACAACAAAATACTTCTTGATTCAAGCTGCTAGTTCTGCCCTTATTCTATTCTCAGGAATCATCAATGCACACCTTCACGGAACATGAGACATCTCTCAGCTTTCAGACACAACAACTAAAACTCTGCTAATATCCGGCTTAGCCACTAAATTAGGCCTAGCTCCTATACATTTCTGATTACCTGACGTAATTCAAGGCATTCCCATGCTTACAGCCCTAATCATCACCACATGACAAAAAATCGCCCCCATAGCCCTTCTTATTATAACCGCCAACCTTCTTCCAACCTCCATCACCCTCACAATAGGAATTACATCAACAATTATCGGCGGACTTGGCGGCCTAAATCAAACCCAACTTCGAAAAATAATAGCCTATTCCTCAATCGCCCA??
	Varanus_niloticus_MVZ245359					CGAAAATGTTGGTCACAAACCCTCCTTCACTAATCAAACCAATCATTAACTTTATCCTACTTTCCAGCATAATCTTCGGAACTATCTTAACAATAACCAGCCACCATTGAATGCTCGCATGACTTGGCCTGGAACTAAACACCCTAGGCATTATCCCTATTATTTCAAAAACCCACCACCCCCGAGCAACTGAAGCCTCAACAAAATATTTCCTAATCCAAGCTGCTACCTCCTCACTAATCTTATTCTCTGGAATTTCCAACGCATGCCTCCACGGAACATGAGACATCACCCAGCTCTCAAGTAACCTAGCTAAAACCACACTAACAACAGCCTTAGCCACTAAACTAGGCCTAGCCCCAGTACACTTCTGATTACCAGAAGTACTTCAAGGCGTACCAGTACTGTCAGCAATTATTATCATCACCTGACAAAAAATCGCCCCAATAACACTTTTTATTATAACCTCAAACCTAATTCCAACCCCAATCACCCTAACCATTGGACTCACATCAACAATTGTTGGAGGACTAGCCGGTCTAAACCAAACTCAACTTCGAAAAGTAATAGCCTTCTCTTCAATC???????
	Varanus_niloticus_MVZ238936					CGAAAATGTTGGTCACAGACCTTCCTCCACTAATCAAMCCAATCACTAACTTTATCCTACTTTCCAGCATAATCTTCGGAACTATCCTAACAATAGCCAGCCATCACTGAATGCTAGCGTGACTTGGCCTGGAACTAAACACCCTAGCCATTATCCCCATTATCTCAAAAACCCACCACCCACGAGCAACCGAAGCCTCAACAAAATACTTCCTAATCCAAGCTGCCAGTTCTTCACTAATCTTATTCTCCGGAATCTCCAATGCATACCTCCACGGAACATGAGATATTACCCAACTCTCAAGCAACCTAGCTAAAATTACACTAACAACAGCCTTAGCAACTAAACTAGGCGTAGCCCCTGTACACTTCTGACTACCAGAAGTACTTCAAGGGGTACCGATACTATCAGCAATCATTATCACCMCCTGACAAAAAATCGCCCCAATAGCACTCCTTATCATAACCTCAAACCTCATCCCAACCCAAATCACCCTAACCATTGGAATTACATCAACAATCATCGGAGGACTAGCCGGCCTAAACCAAACCCAACTCCGAAAGAAAATAGCCTTCTCCTCA??????????
	Varanus_ornatus_CAS207622					CGAAAATGTTGGTCACAGACCTTCCTYCACTAATCAAMCCAATCATTAACTTTATCCTACTTTCCAGCATAATCTCTGGAACTATCCTAACAATAGCCAGCCACCACTGAATGCTCGCATGACTTGGCCTGGAACTAAACACCCTAGCTATTATTTCCCTYATCTCAAAAACTCACCACCCCCGAGCAACCGAAGCCTCAACAAAATACTTCCTAATYCAAGCTGCTAGTTCTTCACTAATCCTATTCTCCGGAATCTTTAACGCACACCTCCACGGAACATGAGACATTACCCAACTCTCAAGCAACCTAGCTAAAATTACACTGACAACAGCCTTAGCCACTAAATTAGGCCTAGCCCCTGTACACTTCTGATTACCAGAAGTGCTTCAAGGAGTACCATTACTATCAGCAATCATTATCACCACCTGACAAAAAATCGCCCCAATAACACTCTTTATCATAACCTCAAACCTCATCCCAACCCAAATCACCCTAGCCATGGGAATCACATCAACAATTATTGGAGGACTGGCCGGCCTAAACCAAACCCAACTCCRAAAAATAATAGCCTTCTCTTCAATCGCCCACC
	Varanus_griseus_VGU71334					CGAAAATGTCGGTTACAAACCTTCCCTCACTAATCAACCCCCTCATTAACTTCACCCTACTTTTCAGCATAATCATCGGAACCGCCCTAACAATAACCAGCCACCACTGAATAATAGCATGATTAGGCCTAGAATTAAACACCCTGGCCATCATTCCTATCATCTCAAAAACCCACCACCCACGAGCAACTGAAGCCTCAACAAAATACTTCCTAATCCAAGCCGCTACCTCCGCACTAATCCTATTTTCCAGCACTATCAATGCACTCTTCCACGGAACATGAGACATTACACAACTCTCAGACAGTCTGGCCAAAATTATGCTAACTATCGCCCTCGCCACTAAACTAGGCCTCGCCCCCATACACTTCTGACTCCCAGAAGTACTTCAAGGAGTACCAATACTCACAGCACTTATCATTACCACCTGACAAAAAATCGCCCCAATATCACTCCTCATCATAACCTCAAAACTCATCCCCACCCCCATCACCCTCACCATAGGACTTACATCAACAATCGTGGGGGGATTAGCCGGCCTCAACCAGACCCAGCTTCGAAAAATAATAGCCTTCTCCTCAATCGCCCACC
	Varanus_griseus_MVZ236611					CGAAAATGTCGGTTGCAAACCTTCCCTCACTAATTAACCCCATCATCAACTCCATCTTACTTCTTAGCATAATCATTGGAACCATCCTGACAACAACCAGCCACCACTGACTGATAGCATGACTAGGCCTAGAACTAAACACCCTAGCCATCATTCCCATTATCTCAAAAACCCACCACCCACGAGCAACTGAAGCCTCAACAAAATACTTCTTAATCCAAGCTGCCACCTCCGCACTAATCCTATTCTCCAGCACCATCAACGTACTTCTCTGTGGAACATGAGACATCACACAACTCTCCAGCAATCTAGCCAAAATTACACTAACTGTCGCCCTCGCAACCAAACTAGGCCTTGCTCCCATACACTTTTGACTCCCAGAGGTACTCCAGGGAGTACCAATACTTACAGCACTCATCATTACCACATGACAGAAAATTGCCCCAATAGCACTCCTCATCATAATCTCAAAACTCATCCCCACCCCCATTACCCTAATCATGGGACTTACATCAACAATTGTAGGAGGACTAGCCGGCCTTAACCAAACCCAACTACGAAAAATAATAGCCTTCTCCTCAATC???????
	Varanus_griseus_MVZ235860					CGAAAATGTCGGTTACAAACCCTCCCTCACTAATTAACCCCATCATCAACTCCATCTTACTTCTTAGCATAATCACTGGAACCATCCTAACAACAACCAGCCACCACTGAATGATGGCATGACTAGGCTTAGAACTAAACACCCTAGCCATCATTCCCATTATCTCAAAAACCCACCACCCACGAGCAACTGAAGCCTCAACAAAATACTTCTTAATCCAAGCTGCTACCTCCGCACTAATCCTATTCTCTAGCACTATCAACGTACTTCTCTGTGGAACATGAGACATCACACAACTCTCCAACAACCTAGCCAAAATCACACTAACTGTCGCCCTCGCAACCAAACTAGGCCTTGCTCCCATACACTTCTGACTCCCAGAGGTACTCCAAGGAGTGCCAATACTTACAGCACTCATCATTACCACATGGCAGAAAATTGCCCCAATAACACTCCTCATCATAATCTCAAAACTCATCCCCACCCCCATTACCCTAATCATGGGACTTACATCAACAATCGTAGGAGGACTAGCCGGCCTTAACCAAACCCAACTGCGAAAAATAATAGCCTTCTCCTCAATCGCCCACC
	Varanus_albigularis_microstictus_MVZ241418	???????????????????????????????????????????????????TTCTTCTTCTCTTCAGCATAATTCTCGGAACCATCCTTACAATGACCAGTCACCACTGAATATTAGCATGACTCGGACTAGAATTAAACACCTTAGCCATTATTCCAATCATCTCAAAAACCCATCACCCACGAGCAACTGAAGCCGCAACAAAATACTTTCTAATCCAAGCTGCTAGCTCCGCACTCATCCTATTCTCCGGAACCACCAATGCATATCTCCACGGGACGTGAGACATCACCCAACTCTCAGACAACCTATCAAAAATCCTACTAATAACAGGCTTAGCCACCAAACTTGGTCTTGCCCCAATACACTTCTGGCTCCCAGAAGTAATTCAAGGCGTCCCCATACTCACTGCTCTCATCATCACTACATGACAAAAAATCGCCCCTATAACCCTCCTCATCATGACCTCAAATCTCATCCCAACTTCCATTACCATCACCCTGSSSACTGCATCAATAATTATTGGCGGACTTGGAGGCCTAAACCAAATCCAACTCCGAAAAATGATAGCCTTTTCTTCAATCGCCC???
	Varanus_yemenensis_MVZ236610				?????????????CACAAACCCTCCTTCACTAATTAACCCGACTGTCAACTTCATCCTTCTTTTCAGCATAATTCTCGGAACCATCCTAACAATGACCAGTCACCACTGAATACTAGCATGACTCGGACTAGAACTAAACACCTTAGCCATTATTCCAATCATTTCAAAAACCCATCACCCACGAGCAACTGAAGCCGCAACAAAATACTTCCTAATCCAAGCTGCTAGCTCCACACTCATTCTATTCTCCGGAACCACCAATGCATGCCTCTGCGGGACATGAGACATCACCCAACTCTCAGACAACCTATCAAAAATCCTACTAATAACAGGCTTAGCCGCCAAACTTGGTCTCGCCCCAATACACTTCTGGCTCCCAGAAGTAATTCAAGGAGTCCCTATACTTACTGCCCTCATCATTACTACATGACAGAAAATCGCCCCTATAACCCTCCTCATCATGACCTCAAATCTTATCCCAACTTCCACTACCATCACCCTAGGAATTGCATCAATAATTATTGGCGGACTTGGAGGCCTAAACCAAACCCAACTCCGAAAAATAATAGCCTTTTCTTCAATCG??????
	Varanus_albigularis_albigularis_AMB8890		CGAAAATGTCGGCCACAAACCCTCCTTCACTAATTAAACCGACCATTAACTTTATCCTTCTTTTCAGCATAATTCTCGGAACCATCCTAACAATGACCAGTCACCACTGAATGTTAGCATGACTAGGATTAGAACTAAATACCCTGGCCATTATTCCCATCATCTCAAAAACCCATCATCCACGAGCAACTGAAGCTGCGACAAAGTACTTCTTAATCCAAGCTGCCAGCTCCACACTCATCCTATTCTCCGGAACCACCAATGCATATCTCCACGGAACTTGAGACATTACCCAGCTCTCAGACAATCTATCAAAAATCCTACTAATAACAGGCTTAGCTACCAAACTTGGCCTTGCCCCGATACACTTTTGACTACCAGAAGTAATTCAAGGCGTCCCTATACTCACCGCCCTAATCATCACCACATGACAAAAAATCGCCCCTATAACCCTCCTCATCATAACCTCAAACCTTATTCCAACTCCCATCACCATTGCCTTAGGAATTACATCAACAATTATTGGCGGACTTGGAGGCCTAAACCAAACCCAACTCCGAAAAATAATAGCCTTTTCTTCAATCGCCCACC
	Varanus_salvator_CAS212911					????????????????????????????????????????????????????????????????CAGCATAATCGCTGGAACCATCCTAACAATAACAAGCCACCACTGAGTATCAGCCTGACTGGGCCTAGAATTAAATACCCTAGCTATCATCCCCATTATTTCAAAAACCCATCACCCCCGAGCAACTAAAGCCTCAACAAAATATTTCCTCATTCAAGCCACTAGTTCCGCACTAGTCCTTCTTTCAGGAATTATCAACGCCCACCTTCACGGATCATGAGACATTTCTCAACTCTCAAATGACTTCACCAAAATCACACTCACAACAGCCCTAGCCACCAAGCTAGGACTGGCCCCAGTCCACTTCTGACTGCCAGAAATCCTCCAAGGAGTACCAACCATCACAGCACTCATCATTGCCACATGACAAAAAATCGCCCCAATAGCACTCCTTATCGCAATCTGAAACCTAATCCCAACCACCATCACCCTCACAATAGGACTCCTATCAACCATCATCGGAGGACTAGGAGGTCTAAATCAAACCCAGCTCCGAAAAATAATAGCCTTCTCCTCAATCGCCCACC
	Varanus_bengalensis_MVZ237483				?????????????????????????????????????????CTCATCAATCTCACTCTTCTCTCCAGTATAATTGCTGGCACCACCCTAACAATAACAAGTCACCATTGAGTGTCAGCCTGACTAGGCCTAGAACTCAACACCCTTGCCATTATCCCAATTATCTCAAAAACCCATCACCCCCGAGCAACTGAAGCCTCAACAAAATACTTCCTAATCCAAGCCGCCAGCTCCGCATTAGTCCTTCTCTCAGGAGTCATTAATGCACATCTCTACGGATCATGAGACATTTCACAACTTTCAAGTGACCTCTCAAAAATCATACTCACAGCAGCCCTAGCCACTAAACTAGGGCTAGCCCCTATTCATTTCTGACTACCAGAAATCCTTCAAGGAACTCCTATCTTTACAGCGCTCATCATCGCCACATGACAAAAAATTGCCCCAATAGCACTCTTCCTCACAATCTCAGACCTTATTCCAACCTCCATCACCCTCATCTTAGGACTTGTATCAATTATCATCGGAGGCCTAGGCGGCCTAAATCAAACTCAACTTCGAAAAATAATAGCTTTCTCATCAATCGCCCACC
	Varanus_bengalensis_CAS213887				CGAAAATGTCGGTTGCAAACCTTCCTTCACTAATCAAACCACTCATCAATTTCACTCTTCTCTCCAGTATAATTGCTGGCACCACCCTAACAATAACCAGTCATCATTGAGTATCAGCCTGACTAGGCCTAGAACTCAACACTCTAGCCATTATTCCAATTATCTCAAAAACCCATCACCCCCGAGCAACTGAAGCCTCAACAAAATACTTTCTAATCCAAGCCGCCAGCTCCGCATTAGTCCTTCTCTCAGGAATCATTAATGCACATCTCTACGGGTCATGAGACATTTCACAACTCTCAAGCGACCTCTCAAAAATCATACTCACAACAGCCTTAGCCACTAAACTAGGACTAGCCCCCATTCATTTCTGACTACCAGAAATCCTTCAAGGAACTCCTATTCTTACAGCGCTCATCATCGCCACATGACAAAAAATTGCCCCAATAGCACTCCTCCTCACAATCTCAGACCTTATCCCAACCTCTATCACTCTCATCTTAGGACTCGTATCAATTATCATCGGAGGCCTAGGCGGCCTAAATCAAACCCAACTTCGAAAAATAATAGCTTTCTCATCAATCGCCCACC
	Shinisaurus_crocodilurus					CAAAAATGTTGGTTTAACACCATCCTCTACTAATGAACCCATACATCCTAACACTACTCATGTCCAGCACAGCAACCGGAACCATCATCACAATAACTAGCTACCACTGAATCCTGGCCTGAGTCGGCCTAGAATTAAATACACTCTCAATCACCCCAATTATTGCTAAAATACATCACCCACGAGCAACAGAAGCCGCAACAAAATATTTTCTCACCCAAGCCGCAGCCTCTGCCCTAATCTTGTTTTCAAGTTCAATCAATGCACAACACGCAGGCCTATGGGATATTACACAGCTCACAGATCCACAAGCAAAAATCCTCCTAACTCTAGCTCTTTCAATAAAACTGGGATTAGTTCCCCTACACTTCTGACTACCAGAAGTATTACAAGGCACATCCTTCCCAGTTATACTCATTATTATTACATGACAGAAACTAGCACCCATCACCATCCTCTACCTTACATTTAACCAAATTTCCTCTATCACGTTACTAACAATAAGCACACTATCAATCATCTTAGGAGGACTATGAGGCCTAAACCAAACCCAACTCCGAAAAATTCTAGCATTCTCCTCCATCGCCCACT
	Heloderma_suspectum							CGAAAATGTTGGTTCGAAACCCGCTCTTATTAATGAATCCCATAATTATAATAATCTTAATCTTCAGTATTACTACTGGAACCATTATTACCATATCCAGCCAACATTGACTTCTTGCCTGGATGGGGTTAGAACTTAATACACTAGCTGTTATCCCAATCATTTCAAAAAAACACCACCCGCGAGCAACTGAAGCTGCAACTAAATACTTCTTAATTCAAGCCGGTGCCTCAGCCATAATTTTATTTTCCAGTATTATTAATGCATGATTTATAGGACAATGAGATATTCTACAACTATCAGACCCATTAGCTAAAACTCTACTTACAATTGCACTAATAATAAAACTAGGACTAACCCCCCTTCACTTCTGATTCCCTGAAGTTCTTCAAGGATCATCACTTACAACAGCACTAATCTTAGCCACATGACAAAAACTTGCACCAATGACCCTCCTTTATATAACAGCACACCAGATCTCAACAACTATTCTTTTAATTATTGGAACCATATCAACAATTGTAGGCGGCCTAGGCGGACTAAACCAAACACAGCTACGAGAAATAATAGCATTCTCCTCAATTGCCCACT
	Elgaria_panaminta							CGAAAATGTTGGTTTAAACCCCTCCTTTATCAATGAGCCCAATAATTACTTCAATCCTAATCCTCAACCTAGCAACAGGAACTATTATTACCATATCAAGCTACCATTGACTTCTCGCATGAATAGGACTAGAACTAAACACCATAGCAATCTTACCCATTATCTCAAAATCACATCATCCACGATCCACAGAGGCCTCAACAAAATACTTTTTAACACAAGCAGCAGCATCCGCCCTAATCCTGTTTGCCAGCATTACAAATGCCCAAACCACAGGCCAATGAAATATTTTACAACTAGAAAACCCCCTAGCCCAAACACTACTCACAATTGCACTAGCCATAAAACTAGGACTAGCACCGACCCATTTCTGACTGCCAGAAGTATTACAAGGCACATCATTCAAAACCACCCTAATCATCATCACCTGACAAAAACTGGCCCCAATAACACTCATATTACTAACATGGAACCAAACCTCCATACTAACAATTACAATGATAGGAGCCCTATCAGTAGTAATCGGAGGACTCGGCGGACTAAACCAAACGCAACTACGAAAAATCATCGCATTTTCCTCAATCGCCCATC
	Xenosaurus_grandis							CGAAAATGTTGGTTTAAACCCCTCCCATACTAATGAGCCCAACTACCCAATCCCTCCTCCTCTCCAACATTGCTATTGGCACCATTATTACAATATCAAGCCACCACTGACTACTAGCGTGAATGGGATTAGAACTAAACACCCTAGCAATACTTCCCATTATTTCAGCTACCCACCACCCGCGAGCCACAGAAGCTTCTACAAAGTACTTCCTCACACAAGCTGCTGCCTCCTCATTAATTCTGTTCGCAAGTATCTTAAATGCCCAACCCTCAGGACAATGAGACATTATACAACTATCAGACCCCTTAGCTAAAGTGCTATTCACCATAGCCCTTGCCATAAAACTGGGCCTCTCCCCAACCCACTTCTGATTGCCAGAAGTACTTCAGGGCTCCCCCCTTAAAACCTCACTAATCATTGTTACTTGACAAAAACTAGCACCAATAACACTTCTCTATCTCACATACAATCAAACCTCAACACCAACCCTAATTACAATTGGCATCATCTCCGTACTAGTTGGGGGGTTAGGGGGCCTAAACCAGACACAACTGCGAAAAATATTAGCCTTCTCCTCAATTTCACATC

;
end;

begin mrbayes;
charset ND2pos1 = 1-591\3;
charset ND2pos2 = 2-591\3;
charset ND2pos3 = 3-591\3;

partition codon = 3: ND2pos1, ND2pos2, ND2pos3;
set partition = codon;

lset applyto=(1) nst = 2 rates = gamma code=vertmt;
lset applyto=(2) nst = 6 rates = propinv code=vertmt;
lset applyto=(3) nst = 6 rates = gamma code=vertmt;

unlink tratio=(all) revmat=(all) omega=(all) statefreq=(all) shape=(all) pinvar=(all) correlation=(all) switchrates=(all) theta=(all);

mcmc ngen=20000000 Nchains=4 Filename=V_RedSea_ND2 printfreq=1000 samplefreq=1000 savebrlens=yes;
end;