#NEXUS [written Tue Sep 13 15:53:25 JST 2011 by Mesquite version 2.74 (build 550) at nonaka-kenichi-no-powerbook-g4-15.local/192.168.65.58] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=18; TAXLABELS 'Zopfiella_erostrata' 'Humicola_grisea_var._thermoidea' 'Humicola_insolens' 'Humicola_grisea_var._grisea' 'Humicola_nigrescens' 'Botryotrichum_piluliferum' 'Retroconis_fusiformis' 'Chaetomium_globosum' 'Staphylotrichum_boninense_FKI-4751' 'Staphylotrichum_boninense_FKI-4859' 'Staphylotrichum_boninense_FKI-5336' 'Staphylotrichum_coccosporum_NBRC31817' 'Staphylotrichum_coccosporum_NBRC33272' 'Staphylotrichum_coccosporum_FKI-5577' 'Staphylotrichum_cocosporum_CBS364.58' 'Chaetomium_floriforme' 'Humicola_fuscoatra' 'Chaetomium_sphaerale' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=600; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX 'Zopfiella_erostrata' -------------------------------CAACAGGGATTGCCCTAGT 'Humicola_grisea_var._thermoidea' GCATAT-CCA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Humicola_insolens' --------CACGT-AGCGGAGGAA--GAA-CCAACAGGGATTGCCCTAGT 'Humicola_grisea_var._grisea' GCATAT-CCT-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Humicola_nigrescens' GCATAT--CA-AAAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Botryotrichum_piluliferum' GCATAT--CA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGT 'Retroconis_fusiformis' GCATAT--CA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Chaetomium_globosum' ---------------------GAAAAGAA--CAACAGGGATTGCCCTAGT 'Staphylotrichum_boninense_FKI-4751' GCATAT--CA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Staphylotrichum_boninense_FKI-4859' GCATAT--CA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Staphylotrichum_boninense_FKI-5336' GCATAT--CA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Staphylotrichum_coccosporum_NBRC31817' GCATAT--CA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Staphylotrichum_coccosporum_NBRC33272' GCATAT--CA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Staphylotrichum_coccosporum_FKI-5577' GCATAT--CA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Staphylotrichum_cocosporum_CBS364.58' GCATAT--CA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Chaetomium_floriforme' -----T--CA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTACT 'Humicola_fuscoatra' GCATATCCCA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Chaetomium_sphaerale' -----T--CA-ATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGT 'Zopfiella_erostrata' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTCC-GGC 'Humicola_grisea_var._thermoidea' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAAGCTGGCCTTCGGGT 'Humicola_insolens' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAAGCTGGCCTTCGGGT 'Humicola_grisea_var._grisea' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTTC-GGC 'Humicola_nigrescens' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTTC-GGC 'Botryotrichum_piluliferum' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTTC-GGC 'Retroconis_fusiformis' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTTC-GGC 'Chaetomium_globosum' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTTC-GGC 'Staphylotrichum_boninense_FKI-4751' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTTC-GGC 'Staphylotrichum_boninense_FKI-4859' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTTC-GGC 'Staphylotrichum_boninense_FKI-5336' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTTC-GGC 'Staphylotrichum_coccosporum_NBRC31817' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CCTC-GGC 'Staphylotrichum_coccosporum_NBRC33272' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CCTC-GGC 'Staphylotrichum_coccosporum_FKI-5577' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CCTC-GGC 'Staphylotrichum_cocosporum_CBS364.58' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CCTC-GGC 'Chaetomium_floriforme' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTTC-GGC 'Humicola_fuscoatra' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTTC-GGC 'Chaetomium_sphaerale' AACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGG-CTTC-GGC 'Zopfiella_erostrata' CCGAGTTGTAATTTGCAGAGGAAGCTTCTGGTGATGCACTGTCTAAGTCC 'Humicola_grisea_var._thermoidea' CCGCGTTGTAATTTGCAGAGGAAGCTTTGGGCGCGGCGCTGTCTGAGTCC 'Humicola_insolens' CCGCGTTGTAATTTGCAGAGGAAGCTTTGGGCGCGGCGCTGTCTGAGTCC 'Humicola_grisea_var._grisea' CCGAGTTGTAATTTGTAGAGGATGCTTTGGGCGCGGCTCTAACTGAGTTC 'Humicola_nigrescens' CCGAGTTGTAATTTGTAGAGGATGCTTTGGGCGCGGCTCTAACTGAGTTC 'Botryotrichum_piluliferum' CCGAGTTGTAATTTGCAGAGGAAGCTTTAGGCGCGGCACCATCTGAGTCC 'Retroconis_fusiformis' CCGAGTTGTAATTTGCAGAGGAAGCTTTAGGCGCGGCACCAACTGAGTCC 'Chaetomium_globosum' CCGAGTTGTAATTTGCAGAGGAAGCTTTAGGCGCGGCACCTTCTGAGTCC 'Staphylotrichum_boninense_FKI-4751' CCGAGTTGTAATTTGCAGAGGAAGCTTTGGGCGCGGCACCGACCGAGTCC 'Staphylotrichum_boninense_FKI-4859' CCGAGTTGTAATTTGCAGAGGAAGCTTTGGGCGCGGCACCGACCGAGTCC 'Staphylotrichum_boninense_FKI-5336' CCGAGTTGTAATTTGCAGAGGAAGCTTTGGGCGCGGCACCGACCGAGTCC 'Staphylotrichum_coccosporum_NBRC31817' CCGAGTTGTAATTTGCAGAGGAAGCTTTGGGCGCGGCACCGACCGAGTCC 'Staphylotrichum_coccosporum_NBRC33272' CCGAGTTGTAATTTGCAGAGGAAGCTTTGGGCGCGGCACCGACCGAGTCC 'Staphylotrichum_coccosporum_FKI-5577' CCGAGTTGTAATTTGCAGAGGAAGCTTTGGGCGCGGCACCGACCGAGTCC 'Staphylotrichum_cocosporum_CBS364.58' CCGAGTTGTAATTTGCAGAGGAAGCTTTGGGCGCGGCACCGACCGAGTCC 'Chaetomium_floriforme' CCGAGTTGTAATTTGCAGAGGAAGCTTTAGGCGCGGCACCAACTGAGTCC 'Humicola_fuscoatra' CCGAGTTGTAATTTGCAGAGGAAGCTTTGGGCGCGGCACCGACTGAGTCC 'Chaetomium_sphaerale' CCGAGTTGTAATTTGCAGAGGAAGCTTTGGGCGCGGCACCGACTGAGTCC 'Zopfiella_erostrata' CCTGGAACGGGGCGCCACAGTGGGTGAGAGCCCCATTT-GACAGAGGCAG 'Humicola_grisea_var._thermoidea' CCTGGAACGGGGCGCCAAAGAGGGTGAGAGCCCCGTATAGACGGATGCCT 'Humicola_insolens' CCTGGAACGGGGCGCCAAAGAGGGTGAGAGCCCCGTATAGACGGATGCCT 'Humicola_grisea_var._grisea' CCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTATAGTTAGATGCCT 'Humicola_nigrescens' CCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTATAGTTAGATGCCT 'Botryotrichum_piluliferum' CCTGGAACGGGGCGCCACAGAGGGTGAGAGCCCCGTATAGATGGACGCCT 'Retroconis_fusiformis' CCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATAGTTGGACGCCT 'Chaetomium_globosum' CCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATAGTTGGATGCCT 'Staphylotrichum_boninense_FKI-4751' CCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATGGTCGGACGCCT 'Staphylotrichum_boninense_FKI-4859' CCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATGGTCGGACGCCT 'Staphylotrichum_boninense_FKI-5336' CCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATGGTCGGACGCCT 'Staphylotrichum_coccosporum_NBRC31817' CCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATGGTCGGACGCCT 'Staphylotrichum_coccosporum_NBRC33272' CCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATGGTCGGACGCCT 'Staphylotrichum_coccosporum_FKI-5577' CCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATGGTCGGACGCCT 'Staphylotrichum_cocosporum_CBS364.58' CCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATGGTCGGACGCCT 'Chaetomium_floriforme' CCTGGAACGGGGCGCCACAGAGGGTGAGAGCCCCGTATAGTTGGACGCTA 'Humicola_fuscoatra' CCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATAGTCGGACGCTA 'Chaetomium_sphaerale' CCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATAGTCGGACGCTA 'Zopfiella_erostrata' ATCC--TGTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Humicola_grisea_var._thermoidea' AGCCTGTGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Humicola_insolens' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Humicola_grisea_var._grisea' AGCC--TATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Humicola_nigrescens' AGCC--TATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Botryotrichum_piluliferum' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Retroconis_fusiformis' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Chaetomium_globosum' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Staphylotrichum_boninense_FKI-4751' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Staphylotrichum_boninense_FKI-4859' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Staphylotrichum_boninense_FKI-5336' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Staphylotrichum_coccosporum_NBRC31817' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Staphylotrichum_coccosporum_NBRC33272' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Staphylotrichum_coccosporum_FKI-5577' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Staphylotrichum_cocosporum_CBS364.58' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Chaetomium_floriforme' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Humicola_fuscoatra' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Chaetomium_sphaerale' AGCC--TGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGC 'Zopfiella_erostrata' TCAAAATGGGAGGTAAATTCCTTCTAAAGCTAAATATTGGCCAGAGACCG 'Humicola_grisea_var._thermoidea' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Humicola_insolens' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Humicola_grisea_var._grisea' TCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCG 'Humicola_nigrescens' TCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCG 'Botryotrichum_piluliferum' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Retroconis_fusiformis' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Chaetomium_globosum' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Staphylotrichum_boninense_FKI-4751' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Staphylotrichum_boninense_FKI-4859' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Staphylotrichum_boninense_FKI-5336' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Staphylotrichum_coccosporum_NBRC31817' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Staphylotrichum_coccosporum_NBRC33272' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Staphylotrichum_coccosporum_FKI-5577' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Staphylotrichum_cocosporum_CBS364.58' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Chaetomium_floriforme' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Humicola_fuscoatra' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Chaetomium_sphaerale' TCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG 'Zopfiella_erostrata' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Humicola_grisea_var._thermoidea' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Humicola_insolens' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Humicola_grisea_var._grisea' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Humicola_nigrescens' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Botryotrichum_piluliferum' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Retroconis_fusiformis' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Chaetomium_globosum' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Staphylotrichum_boninense_FKI-4751' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Staphylotrichum_boninense_FKI-4859' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Staphylotrichum_boninense_FKI-5336' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Staphylotrichum_coccosporum_NBRC31817' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Staphylotrichum_coccosporum_NBRC33272' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Staphylotrichum_coccosporum_FKI-5577' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Staphylotrichum_cocosporum_CBS364.58' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Chaetomium_floriforme' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Humicola_fuscoatra' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Chaetomium_sphaerale' ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGG 'Zopfiella_erostrata' GTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Humicola_grisea_var._thermoidea' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Humicola_insolens' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Humicola_grisea_var._grisea' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Humicola_nigrescens' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Botryotrichum_piluliferum' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Retroconis_fusiformis' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Chaetomium_globosum' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Staphylotrichum_boninense_FKI-4751' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Staphylotrichum_boninense_FKI-4859' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Staphylotrichum_boninense_FKI-5336' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Staphylotrichum_coccosporum_NBRC31817' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Staphylotrichum_coccosporum_NBRC33272' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Staphylotrichum_coccosporum_FKI-5577' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Staphylotrichum_cocosporum_CBS364.58' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Chaetomium_floriforme' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Humicola_fuscoatra' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Chaetomium_sphaerale' GTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTT 'Zopfiella_erostrata' GCGCTGGGCTGATCATCCGGTGTTCTCACCGGTGCACTCGGCCCAGCTCA 'Humicola_grisea_var._thermoidea' GCGCCGGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCCGGCTCA 'Humicola_insolens' GCGCCGGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCCGGCTCA 'Humicola_grisea_var._grisea' GCGCCGGGCAGATCATCCGGTGTTCTCACCGGTGCACTCTGCCCGGCTCA 'Humicola_nigrescens' GCGCCGGGCAGATCATCCGGTGTTCTCACCGGTGCACTCTGCCCGGCTCA 'Botryotrichum_piluliferum' GCGCCGGGCGGATCATCCGGTGTTCTCACCGGTGCACTCCGCCCGGCTCA 'Retroconis_fusiformis' GCGCCGGGCGGATCATCCGGTGTTCTCACCGGTGCACTCCGCCCGGCTCA 'Chaetomium_globosum' GCGCCGGGCGGATCATCCGGTGTTCTCACCGGTGCACTCCGCCCGGCTCA 'Staphylotrichum_boninense_FKI-4751' GCGCCCGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCGGGCTCA 'Staphylotrichum_boninense_FKI-4859' GCGCCCGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCGGGCTCA 'Staphylotrichum_boninense_FKI-5336' GCGCCCGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCGGGCTCA 'Staphylotrichum_coccosporum_NBRC31817' GCGCCCGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCGGGCTCA 'Staphylotrichum_coccosporum_NBRC33272' GCGCCCGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCGGGCTCA 'Staphylotrichum_coccosporum_FKI-5577' GCGCCCGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCGGGCTCA 'Staphylotrichum_cocosporum_CBS364.58' GCGCCCGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCGGGCTCA 'Chaetomium_floriforme' GCGCCCGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCGGGCTCA 'Humicola_fuscoatra' GCGCCTGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCAGGCTCA 'Chaetomium_sphaerale' GCGCCTGGCTGATCATCCGGTGTTCTCACCGGTGCACTCTGCCAGGCTCA 'Zopfiella_erostrata' GGCCAGCATCGGTTTTGGTGGGGGGATAAAGGCGCTGGGAACGTAGCTCC 'Humicola_grisea_var._thermoidea' GGCCAGCATCGGTTCTCGCGGGGGGATAAAGGCTTAGGGAATGTAGCTCC 'Humicola_insolens' GGCCAGCATCGGTTCTCGCGGGGGGATAAAGGCTTAGGGAATGTAGCTCC 'Humicola_grisea_var._grisea' GGCCAGCATCGGTTCTCGTGGGGGGATAAAGGTCCCGGGAACGTAGCTCC 'Humicola_nigrescens' GGCCAGCATCGGTTCTCGTGGGGGGATAAAGGTCCCGGGAACGTAGCTCC 'Botryotrichum_piluliferum' GGCCAGCATCGGTTCTCGTGGGGGGATAAAGGCACCGGGAACGTAGCTCC 'Retroconis_fusiformis' GGCCAGCATCGGTTCTCGCGGGGGGACAAAGGTCCTGGGAACGTAGCTCC 'Chaetomium_globosum' GGCCAGCATCGGTTCTCGCGGGGGGATAAAGGTCCTGGGAACGTAGCTCC 'Staphylotrichum_boninense_FKI-4751' GGCCAGCATCGGTTCTCGCGGGGGGATAAAGGCCCAGGGAACGTGGCTCC 'Staphylotrichum_boninense_FKI-4859' GGCCAGCATCGGTTCTCGCGGGGGGATAAAGGCCCAGGGAACGTGGCTCC 'Staphylotrichum_boninense_FKI-5336' GGCCAGCATCGGTTCTCGCGGGGGGATAAAGGCCCAGGGAACGTGGCTCC 'Staphylotrichum_coccosporum_NBRC31817' GGCCAGCATCGGTTCTCGCGGGGGGACAAAGGCTCTGGGAACGTAGCTCC 'Staphylotrichum_coccosporum_NBRC33272' GGCCAGCATCGGTTCTCGCGGGGGGACAAAGGCCCTGGGAACGTAGCTCC 'Staphylotrichum_coccosporum_FKI-5577' GGCCAGCATCGGTTCTCGCGGGGGGACAAAGGCCCTGGGAACGTAGCTCC 'Staphylotrichum_cocosporum_CBS364.58' GGCCAGCATCGGTTCTCGCGGGGGGACAAAGGCCCTGGGAACGTAGCTCC 'Chaetomium_floriforme' GGCCAGCATCGGTTCTCGCGGGGGGATAAAGGCCCTGGGAACGTAGCTCC 'Humicola_fuscoatra' GGCCAGCATCGGTTCTCGCGGGGGGATAAAGGCCCTGGGAACGTAGCTCC 'Chaetomium_sphaerale' GGCCAGCATCGGTTCTCGCGGGGGGATAAAGGCCCTGGGAACGTAGCTCC 'Zopfiella_erostrata' TTCGGGAGTGTTATAGCCCAGCGTGCAATGCCCCCGCTGGGACCGAGGTT 'Humicola_grisea_var._thermoidea' TCCGGGAGTGTTATAGCCCTCTGCGTAATACCCTCGCGGGGACCGAGGTC 'Humicola_insolens' TCCGGGAGTGTTATAGCCCTCTGCGTAATACCCTCGCGGGGACCGAGGTC 'Humicola_grisea_var._grisea' TCCGGGAGTGTTATAGCCCGGGGCGTAATGCCCTCGTGGGGACCGAGGTT 'Humicola_nigrescens' TCCGGGAGTGTTATAGCCCGGGGCGTAATGCCCTCGTGGGGACCGAGGTT 'Botryotrichum_piluliferum' TCCGGGAGTGTTATAGCCCGGGGCGTAATGCCCTCGCGGGGACCGAGGAC 'Retroconis_fusiformis' TCCGGGAGTGTTATAGCCCAGGGCGTAATGCCCTCGCGGGGACCGAGGTT 'Chaetomium_globosum' TCCGGGAGTGTTATAGCCCGGGGCGTAATGCCCTCGCGGGGACCGAGGTT 'Staphylotrichum_boninense_FKI-4751' TCCGGGAGTGTTATAGCCCTGGGTGCAATGCCCTCGCGGGGACCGAGGTT 'Staphylotrichum_boninense_FKI-4859' TCCGGGAGTGTTATAGCCCTGGGTGCAATGCCCTCGCGGGGACCGAGGTT 'Staphylotrichum_boninense_FKI-5336' TCCGGGAGTGTTATAGCCCTGGGTGCAATGCCCTCGCGGGGACCGAGGTT 'Staphylotrichum_coccosporum_NBRC31817' TCCGGGAGTGTTATAGCCCAGGGTGCAATGCCCTCGCGGGGACCGAGGTT 'Staphylotrichum_coccosporum_NBRC33272' TCCGGGAGTGTTATAGCCCTGGGTGCAATGCCCTCGCGGGGACCGAGGTT 'Staphylotrichum_coccosporum_FKI-5577' TCCGGGAGTGTTATAGCCCAGGGTGCAATGCCCTCGCGGGGACCGAGGTT 'Staphylotrichum_cocosporum_CBS364.58' TCCGGGAGTGTTATAGCCCAGGGTGCAATGCCCTCGCGGGGACCGAGGTT 'Chaetomium_floriforme' TCCGGGAGTGTTATAGCCCAGGGTGTAATGCCCTCGCGGGGACCGAGGTT 'Humicola_fuscoatra' TCCGGGAGTGTTATAGCCCAGGGTGCAATGCCCTCGCGGGGACCGAGGTT 'Chaetomium_sphaerale' TCCGGGAGTGTTATAGCCCAGGGTGCAATGCCCTCGCGGGGACCGAGGTT 'Zopfiella_erostrata' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGA 'Humicola_grisea_var._thermoidea' TGCGC-TCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGA 'Humicola_insolens' TGCGC-TCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCTTCTTGA 'Humicola_grisea_var._grisea' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTG- 'Humicola_nigrescens' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGA 'Botryotrichum_piluliferum' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCA----------------- 'Retroconis_fusiformis' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGA 'Chaetomium_globosum' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGA 'Staphylotrichum_boninense_FKI-4751' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGA 'Staphylotrichum_boninense_FKI-4859' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGA 'Staphylotrichum_boninense_FKI-5336' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGA 'Staphylotrichum_coccosporum_NBRC31817' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCACCAGCGACCCGTCTTGA 'Staphylotrichum_coccosporum_NBRC33272' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCACCAGCGACCCGTCTTGA 'Staphylotrichum_coccosporum_FKI-5577' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCACCAGCGACCCGTCTTGA 'Staphylotrichum_cocosporum_CBS364.58' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCACCAGCGACCCGTCTTGA 'Chaetomium_floriforme' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCACCAGCGACCCGTCTTGA 'Humicola_fuscoatra' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGA 'Chaetomium_sphaerale' CGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGA ; END; BEGIN TREES; Title 'Trees from "Staphylotrichum_Fig1.NX"'; LINK Taxa = Taxa; TRANSLATE 1 'Zopfiella_erostrata', 2 'Humicola_grisea_var._thermoidea', 3 'Humicola_insolens', 4 'Humicola_grisea_var._grisea', 5 'Humicola_nigrescens', 6 'Botryotrichum_piluliferum', 7 'Retroconis_fusiformis', 8 'Chaetomium_globosum', 9 'Staphylotrichum_boninense_FKI-4751', 10 'Staphylotrichum_boninense_FKI-4859', 11 'Staphylotrichum_boninense_FKI-5336', 12 'Staphylotrichum_coccosporum_NBRC31817', 13 'Staphylotrichum_coccosporum_NBRC33272', 14 'Staphylotrichum_coccosporum_FKI-5577', 15 'Staphylotrichum_cocosporum_CBS364.58', 16 'Chaetomium_floriforme', 17 'Humicola_fuscoatra', 18 'Chaetomium_sphaerale'; TREE 'PAUP 1+' = (((((1,((2,3),((4,5),(6,(7,8))))),(16,(17,18))),((9,10),11)),13),12,(14,15))[% ] [%unrooted = on ]; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 600; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 600; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 600; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1315896805782; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6673361396154150869; tell It; setSelected 1; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6604977705605546111; mqVersion 274; checksumv 0 2 3648816993 null getNumChars 600 numChars 600 getNumTaxa 18 numTaxa 18 short true bits 15 states 15 sumSquaresStatesOnly 202743.0 sumSquares 202743.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 768 497; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6673361396154150869 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1065.1313648536926.2531608561160156859; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 668 430; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1,(((2,3),((4,5),(6,(7,8)))),((16,(17,18)),((11,(9,10)),(13,(12,(14,15)))))))<> ;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6604977705605546111 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 668 430; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;