#NEXUS [written Tue Sep 13 15:54:03 JST 2011 by Mesquite version 2.74 (build 550) at nonaka-kenichi-no-powerbook-g4-15.local/192.168.65.58] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS 'Zopfiella_karachiensis' 'Zopfiella_erostrata' 'Humicola_grisea_var._thermoidea' 'Humicola_insolens_MTCC4617' 'Humicola_insolens_IMI126330' 'Staphylotrichum_boninense_FKI-4859' 'Staphylotrichum_boninense_FKI-4751' 'Staphylotrichum_boninense_FKI-5336' 'Staphylotrichum_coccosporum_FKI-5577' 'Staphylotrichum_coccosporum_NBRC33272' 'Staphylotrichum_cocosporum_CBS364.58' 'Staphylotrichum_coccosporum_NBRC31817' 'Chaetomium_globosum' 'Humicola_nigrescens' 'Humicola_grisea_var._grisea_FO-2942' 'Humicola_grisea_var._grisea_DAOM232586' 'Botryotrichum_piluliferum' 'Retroconis_fusiformis' 'Humicola_fuscoatra' 'Chaetomium_sphaerale' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=604; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX 'Zopfiella_karachiensis' ACCGGCGGAGGGATCATTAGCGAGT---AATACTCTCTAACACCATTG-T 'Zopfiella_erostrata' ACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC--AACCCTTTG-T 'Humicola_grisea_var._thermoidea' ACCTGCGGAGGGATCATTACAGAGTTACACAACTCAC-CAAACCATCG-T 'Humicola_insolens_MTCC4617' -------GACGGATCATTACAGAGTTACAC-ACTCAC-CAAACCATTGCT 'Humicola_insolens_IMI126330' -------------------CAGAGTTACACAACTCAC-CAAACCATTG-T 'Staphylotrichum_boninense_FKI-4859' ACCTGCGGAGGGATCATTACAGAGTCGAAATACTCCG-TAACCCATTG-T 'Staphylotrichum_boninense_FKI-4751' ACCAGCGGAGGGATCATTACAGAGTCGAAATACTCCG-TAAACCATTG-T 'Staphylotrichum_boninense_FKI-5336' ACCAGCGGAGGGATCATTACAGAGTCGAAATACTCCG-TAAACCATTG-T 'Staphylotrichum_coccosporum_FKI-5577' ACCAGCGGAGGGATCATTACAGAGTCGCAATACTCCG-TAAACCATTG-T 'Staphylotrichum_coccosporum_NBRC33272' ACCAGCGGAGGGATCATTACAGAGTCGCAACACTCCG-TAAACCATTG-T 'Staphylotrichum_cocosporum_CBS364.58' ACCAGCGGAGGGATCATTACAGAGTCGCAATACTCCG-TAAACCATTG-T 'Staphylotrichum_coccosporum_NBRC31817' ACCAGCGGAGGGATCATTACAGAGTCGCAATACTCCG-TAAACCATTG-T 'Chaetomium_globosum' --CTGCGGAGGGATCATTACAGAGTTGCAAAACTCCC-TAAACCATTG-T 'Humicola_nigrescens' ACCTGCGGAGGGATCATTAAAGAGTTGCAAAACTCCC--AAACCATTG-T 'Humicola_grisea_var._grisea_FO-2942' ACCTGCGGAGGGATCATTAAAGAGTTGCAAAACTCCC--AAACCATTG-T 'Humicola_grisea_var._grisea_DAOM232586' ACCAGCGGAGGGATCATTAAAGAGTTGCAAAACTCCC--AAACCATTG-T 'Botryotrichum_piluliferum' ACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC-TAAACCATTG-T 'Retroconis_fusiformis' ACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC--AAACCATTG-T 'Humicola_fuscoatra' ACCTGCGGAGGGATCATTACAGAGTTGCAAAACTCCC-TAAACCATTG-T 'Chaetomium_sphaerale' ACCTGCGGAGGGATCATTACAGAGTTGCAAAACTCCC-TAAACCATTG-T 'Zopfiella_karachiensis' GAACG--AACCGAATTTAGTTGCTTCGGCGGGGT---------------- 'Zopfiella_erostrata' GAA--TCAACTA--GACAGTTGCCTCGGCGGGAGGCCCT----------- 'Humicola_grisea_var._thermoidea' GAACCGACCCTT----CTGTTGCTTCGGCGGGAGGCGCC------TCGGC 'Humicola_insolens_MTCC4617' GAACCGACCCTT----CTGTTGCTTCGGCGGGAGGCGCC------TCGGC 'Humicola_insolens_IMI126330' GAACCGACCCTT----CTGTTGCTTCGGCGGGAGGCGCC------TCGGC 'Staphylotrichum_boninense_FKI-4859' GAACGTTACCTT--AACCGTTGCTTCGGCGGGCGGCGCCCGGCCCTCGTG 'Staphylotrichum_boninense_FKI-4751' GAACGTTACCTT--AACCGTTGCTTCGGCGGGCGGCGCCCGGCCCTCGTG 'Staphylotrichum_boninense_FKI-5336' GAACGTTACCTT--AACCGTTGCTTCGGCGGGCGGCGCCCGGCCCTCGTG 'Staphylotrichum_coccosporum_FKI-5577' GAACGTTACCTT--AACCGTTGCTTCGGCGGGCGGCGCCCGGGCCTCACC 'Staphylotrichum_coccosporum_NBRC33272' GAACGTTACCTT--AACCGTTGCTTCGGCGGGCGGCGCCCGGGCCTCACC 'Staphylotrichum_cocosporum_CBS364.58' GAACGTTACCTT--AACCGTTGCTTCGGCGGGCGGCGCCCGGGCCTCACC 'Staphylotrichum_coccosporum_NBRC31817' GAACGTTACCTT--AACCGTTGCTTCGGCGGGCGGCGCCCGGGCCTCACC 'Chaetomium_globosum' GAACGTTACCTA--TACCGTTGCTTCGGCGGGCGGCCCCGGGGTTT-ACC 'Humicola_nigrescens' GAACAT-ACCTTC-AAC-GTTGCTTCGGCGGGTTGGCCCCGGTCTCCGGG 'Humicola_grisea_var._grisea_FO-2942' GAACAT-ACCTTC-AAC-GTTGCTTCGGCGGGTTGGCCCCGGTCTCCGGG 'Humicola_grisea_var._grisea_DAOM232586' GAACAT-ACCTTC-AAC-GTTGCTTCGGCGGGTTGGCCCCGGTCTCCGGG 'Botryotrichum_piluliferum' GAACGTTACCTTCAAACCGTTGCTTCGGCGGGCGGCCC----------GG 'Retroconis_fusiformis' GAACGTTACCTTC-TACCGTTGCTTCGGCGGGCGGCTCCGGGTCTCCC-- 'Humicola_fuscoatra' GAACGTTACCTA--AACCGTTGCTTCGGCGGGCGGC-CCGGGTCCTTCCC 'Chaetomium_sphaerale' GAACGTTACCTA--AACCGTTGCTTCGGCGGGCGGC-CCGGGTCCTTCCC 'Zopfiella_karachiensis' ---------------------------------------AAAACCCGCCG 'Zopfiella_erostrata' ---------------------------------TCAGGGGCTGCCCGCCG 'Humicola_grisea_var._thermoidea' GCCCCTCGGCCGATCCCCCGCCCCCGCGGCGTGGGGGGAGGCTCCCGCCG 'Humicola_insolens_MTCC4617' GCCCCTCGGCCGATCCCCCGCCCCCGCGGCGTGGGGGGAGGCTCCCGCCG 'Humicola_insolens_IMI126330' GCCCCTCGGCCGATCCCCCGCCCCCGCGGCGTGGGGGGAGGCTCCCGCCG 'Staphylotrichum_boninense_FKI-4859' GCCCGC--GGCGCCCCCCGGCCCCC----TGC------GGGCGCCCGCCG 'Staphylotrichum_boninense_FKI-4751' GCCCGC--GGCGCCCCCCGGCCCCC----TGC------GGGCGCCCGCCG 'Staphylotrichum_boninense_FKI-5336' GCCCGC--GGCGCCCCCCGGCCCCC----TGC------GGGCGCCCGCCG 'Staphylotrichum_coccosporum_FKI-5577' GCCCGC--GGCGCCCCCCGGCCCCC----CGT------GGGCGCCCGCCG 'Staphylotrichum_coccosporum_NBRC33272' GCCCGC--GGCGCCCCCCGGCCCCC----CGT------GGGCGCCCGCCG 'Staphylotrichum_cocosporum_CBS364.58' GCCCGC--GGCGCCCCCCGGCCCCC----CGT------GGGCGCCCGCCG 'Staphylotrichum_coccosporum_NBRC31817' GCCCGC--GGCGCCCCCCGGCCCCC----CGT------GGGCGCCCGCCG 'Chaetomium_globosum' CCCCG---GGCGCCCCTGGGCCCC-----ACCGC----GGGCGCCCGCCG 'Humicola_nigrescens' GTCCCC--GGCCCTACCC--------------------GGGCGCCCGCCG 'Humicola_grisea_var._grisea_FO-2942' GTCCCC--GGCCCTACTC--------------------GGGCGCCCGCCG 'Humicola_grisea_var._grisea_DAOM232586' GTCCCC--GGCCCTACTC--------------------GGGCGCCCGCCG 'Botryotrichum_piluliferum' GTCCGCCCGGTGCCCCCTGGCCCCC---TAGCG-----GGGCGCCCGCCG 'Retroconis_fusiformis' --------GGGGCCCCTCGGCCCCC---TCGCG-----GGGCGCCCGCCG 'Humicola_fuscoatra' --------GGCGCCCCTCGGCCC-----TCGC------GGGCGCCCGCCG 'Chaetomium_sphaerale' --------GGCGCCCCCCGGCCC-----TCGC------GGGCGCCCGCCG 'Zopfiella_karachiensis' GAAGAAC----GCAAACACTCTGTAATG---ATTGTATCTCTGAGCTAAC 'Zopfiella_erostrata' GAGGACC---ACTAAACTC-TTGTATTT---TTGGCCTCTCTGAGTAAT- 'Humicola_grisea_var._thermoidea' GAGGAATACCCCCAAACCCTTTGCAGCA--CGTGGCCTCTCTGAGT-TTA 'Humicola_insolens_MTCC4617' GAGGAATAC-CCCAAACCCTTTGCAGCA--CATGGCCTCTCTGAGT-TTA 'Humicola_insolens_IMI126330' GAGGAATAC-CCCAAACCCTTTGCAGCA--CATGGCCTCTCTGAGT-TTA 'Staphylotrichum_boninense_FKI-4859' GAGG--TAT-ACCTAACTC-TTGAATTA--CATGGCCTCTCTGAGTCTTC 'Staphylotrichum_boninense_FKI-4751' GAGG--TAT-ACCTAACTC-TTGAATTA--CACGGCCTCTCTGAGTCTTC 'Staphylotrichum_boninense_FKI-5336' GAGG--TAT-ACCTAACTC-TTGAATTA--CATGGCCTCTCTGAGTCTTC 'Staphylotrichum_coccosporum_FKI-5577' GAGG--TAC-ACCAAACTC-TTGCATTA--TATGGCCTCTCTGAGTATTC 'Staphylotrichum_coccosporum_NBRC33272' GAGG--TAC-ACCAAACTC-TTGCATTG--TATGGCCTCTCTGAGTATTC 'Staphylotrichum_cocosporum_CBS364.58' GAGG--TAC-ACCAAACTC-TTGCATTA--TATGGCCTCTCTGAGTATTC 'Staphylotrichum_coccosporum_NBRC31817' GAGG--TAC-ACCAAACTC-TTGCATTA--TATGGCCTCTCTGAGTATTC 'Chaetomium_globosum' GAGG--TC--ACCAAACTCTTGATAATT--TATGGCCTCTCTGAGTCTTC 'Humicola_nigrescens' GAGG--TAT---CTAACTC-TTGAACTT-TTATGGCCTCTCTGAGTCTT- 'Humicola_grisea_var._grisea_FO-2942' GAGG--TAT---CTAACTC-TTGAACTT-TTATGGCCTCTCTGAGTCTT- 'Humicola_grisea_var._grisea_DAOM232586' GAGG--TAT---CTAACTC-TTGAACTT-TTATGGCCTCTCTGAGTCTT- 'Botryotrichum_piluliferum' GAGG--AAA-ACCCAACTC-TTGATTAT--TATGGCCTCTCTGAGTCTTC 'Retroconis_fusiformis' GAGG--CT--ACCAAACTC-TTG-ATTAATTATGGCCTCTCTGAGTCTTC 'Humicola_fuscoatra' GAGG--TAA-ACCAAACTA-TTGCATTG--TATGGCCTCTCTGAGTCTTC 'Chaetomium_sphaerale' GAGG--TAA-ACCAAACTA-TTGCATTA---ATGGCCTCTCTGAGTCTTC 'Zopfiella_karachiensis' TTT--TTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Zopfiella_erostrata' --TCTAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Humicola_grisea_var._thermoidea' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Humicola_insolens_MTCC4617' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Humicola_insolens_IMI126330' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Staphylotrichum_boninense_FKI-4859' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Staphylotrichum_boninense_FKI-4751' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Staphylotrichum_boninense_FKI-5336' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Staphylotrichum_coccosporum_FKI-5577' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Staphylotrichum_coccosporum_NBRC33272' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Staphylotrichum_cocosporum_CBS364.58' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Staphylotrichum_coccosporum_NBRC31817' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Chaetomium_globosum' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Humicola_nigrescens' TGTACTTAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Humicola_grisea_var._grisea_FO-2942' TGTACTTAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Humicola_grisea_var._grisea_DAOM232586' TGTACTTAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Botryotrichum_piluliferum' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Retroconis_fusiformis' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Humicola_fuscoatra' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Chaetomium_sphaerale' TGTACTGAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAT 'Zopfiella_karachiensis' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Zopfiella_erostrata' CGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCA 'Humicola_grisea_var._thermoidea' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Humicola_insolens_MTCC4617' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Humicola_insolens_IMI126330' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Staphylotrichum_boninense_FKI-4859' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Staphylotrichum_boninense_FKI-4751' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Staphylotrichum_boninense_FKI-5336' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Staphylotrichum_coccosporum_FKI-5577' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Staphylotrichum_coccosporum_NBRC33272' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Staphylotrichum_cocosporum_CBS364.58' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Staphylotrichum_coccosporum_NBRC31817' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Chaetomium_globosum' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Humicola_nigrescens' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Humicola_grisea_var._grisea_FO-2942' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Humicola_grisea_var._grisea_DAOM232586' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Botryotrichum_piluliferum' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Retroconis_fusiformis' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Humicola_fuscoatra' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Chaetomium_sphaerale' CGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCA 'Zopfiella_karachiensis' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCACTCTGGCG 'Zopfiella_erostrata' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCACTCTGGCG 'Humicola_grisea_var._thermoidea' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCGGTATTCCGGCG 'Humicola_insolens_MTCC4617' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCGGTATTCCGGCG 'Humicola_insolens_IMI126330' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCGGTAGTCCGGCG 'Staphylotrichum_boninense_FKI-4859' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Staphylotrichum_boninense_FKI-4751' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Staphylotrichum_boninense_FKI-5336' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Staphylotrichum_coccosporum_FKI-5577' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Staphylotrichum_coccosporum_NBRC33272' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Staphylotrichum_cocosporum_CBS364.58' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Staphylotrichum_coccosporum_NBRC31817' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Chaetomium_globosum' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCG 'Humicola_nigrescens' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Humicola_grisea_var._grisea_FO-2942' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Humicola_grisea_var._grisea_DAOM232586' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Botryotrichum_piluliferum' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Retroconis_fusiformis' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Humicola_fuscoatra' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Chaetomium_sphaerale' GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCG 'Zopfiella_karachiensis' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCCAGGCTTGCGT 'Zopfiella_erostrata' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCCAGGCTTGTGT 'Humicola_grisea_var._thermoidea' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCTGGGCTTGTGT 'Humicola_insolens_MTCC4617' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCTGGGCTTGTGT 'Humicola_insolens_IMI126330' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCTGGGCTTGTGT 'Staphylotrichum_boninense_FKI-4859' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCCGGGCTTGTGT 'Staphylotrichum_boninense_FKI-4751' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCCGGGCTTGTGT 'Staphylotrichum_boninense_FKI-5336' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCCGGGCTTGTGT 'Staphylotrichum_coccosporum_FKI-5577' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCAGGGCTTGTGT 'Staphylotrichum_coccosporum_NBRC33272' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCCGGGCTTGTGT 'Staphylotrichum_cocosporum_CBS364.58' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCAGGGCTTGCGT 'Staphylotrichum_coccosporum_NBRC31817' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCAGGGCTTGTGT 'Chaetomium_globosum' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCCGGGCTTGTGT 'Humicola_nigrescens' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCCAGGCTTGTGT 'Humicola_grisea_var._grisea_FO-2942' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCCCGGCTTGTGT 'Humicola_grisea_var._grisea_DAOM232586' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCCCGGCTTGTGT 'Botryotrichum_piluliferum' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCCGCGCTTGTGT 'Retroconis_fusiformis' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCCCGGCTTGTGT 'Humicola_fuscoatra' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCCGGGCTTGTGT 'Chaetomium_sphaerale' GGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCCCGGCTTGTGT 'Zopfiella_karachiensis' TGGGGGCCTGCGGCTGCCGCAGCCCCCTAAAAGCAGTGGCGGGCTCGCT- 'Zopfiella_erostrata' TGGAGCCCTGCGGCTGCCGCAGCCTCCTAAAAGCAGTGGCGGGCTCGCT- 'Humicola_grisea_var._thermoidea' TGGGGACCTGCGGCTGCCGCAGGCCCTGAAATGCAGTGGCGGGCTCGCAA 'Humicola_insolens_MTCC4617' TGGGGACCTGCGGCTGCCGCAGGCCCTGAAATGCAGTGGCGGGCTCGCAA 'Humicola_insolens_IMI126330' TGGGGACCTGCGGCTGCCGCAGGCCCTGAAATGCAGTGGCGGGCTCGCAA 'Staphylotrichum_boninense_FKI-4859' TGGGGACCTGCGGCTGCCGCAGACCCCGAAAACCAGTGGCGGGCTCGCT- 'Staphylotrichum_boninense_FKI-4751' TGGGGACCTGCGGCTGCCGCAGACCCCGAAAACCAGTGGCGGGCTCGCT- 'Staphylotrichum_boninense_FKI-5336' TGGGGACCTGCGGCTGCCGCAGACCCCGAAAACCAGTGGCGGGCTCGCT- 'Staphylotrichum_coccosporum_FKI-5577' TGGGGACCTGCGGCTGCCGCAGGCCCCGAAAAACAGTGGCGGGCTCGCT- 'Staphylotrichum_coccosporum_NBRC33272' TGGGGACCTGCGGCTGCCGCAGGCCCCGAAAACCAGTGGCGGGCTCGCT- 'Staphylotrichum_cocosporum_CBS364.58' TGGGGACCTGCGGCTGCCGCAGGCCCCGAAAAACAGTGGCGGGCTCGCT- 'Staphylotrichum_coccosporum_NBRC31817' TGGGGACCTGCGGCTGCCGCAGGCCCCGAAAAACAGTGGCGGGCTCGCT- 'Chaetomium_globosum' TGGGGACCTGCGGCTGCCGCAGGCCCTGAAAAGCAGTGGCGGGCTCGCT- 'Humicola_nigrescens' TGGGGACCTGCGGCTGCCGCAGGCCCTGAAAACCAGTGGCGGGCTCGCTA 'Humicola_grisea_var._grisea_FO-2942' TGGGGACCTGCGGCTGCCGCAGGCCCTGAAAACCAGTGGCGGGCTCGCTA 'Humicola_grisea_var._grisea_DAOM232586' TGGGGACCTGCGGCTGCCGCAGGCCCTGAAAACCAGTGGCGGGCTCGCTA 'Botryotrichum_piluliferum' TGGGGACCTGCGGCTGCCGCAGGCCCTGAAAACCAGTGGCGGGCTCGCT- 'Retroconis_fusiformis' TGGGGACCTGCGGCTGCCGCAGGCCCTGAAAACCAGTGGCGGGCTCGCT- 'Humicola_fuscoatra' TGGGGACCTGCGGCTGCCGCAGGCCCTGAAATGCAGTGGCGGGCTCGCT- 'Chaetomium_sphaerale' TGGGGACCTGCGGCTGCCGCAGGCCCTGAAATGCAGTGGCGGGCTCGCT- 'Zopfiella_karachiensis' GTCATTCCGAGCGCAGTAGTT--ACATC-TCGCTCTGGGCGTGGCGGCGG 'Zopfiella_erostrata' ATCACACCGAGTGCAGTAGATT-TC-TCTTCGCTCAGGACGTGTG-GCGG 'Humicola_grisea_var._thermoidea' GACACACCGAGCGTAGTAGCTT-ACAACCTCGCTTTGGGAGTGCT-GCGG 'Humicola_insolens_MTCC4617' GACACACCGAGCGTAGTAGCTT-ACAACCTCGCTTTGGGAGTGCT-GCGG 'Humicola_insolens_IMI126330' GACACACCGAGCGTAGTAGCTT-ACAACCTCGCTTTGGGAGTGCT-GCGG 'Staphylotrichum_boninense_FKI-4859' GTCACCCCGAGCGTAGTAGTTT-ACACC-TCGCCCAGGGCGCGAC-GCGG 'Staphylotrichum_boninense_FKI-4751' GTCACCCCGAGCGTAGTAGTTT-ACACC-TCGCCCAGGGCGCGAC-GCGG 'Staphylotrichum_boninense_FKI-5336' GTCACCCCGAGCGTAGTAGTTT-ACACC-TCGCCCAGGGCGCGAC-GCGG 'Staphylotrichum_coccosporum_FKI-5577' GTCACCCCGAGCGTAGTAGTTT-ACACC-TCGGCCAGGCCGAGCC-GCGG 'Staphylotrichum_coccosporum_NBRC33272' GTCACCCCGAGCGTAGTAGTTT-ACACC-TCGCCCAGGGCGTGCC-GCGG 'Staphylotrichum_cocosporum_CBS364.58' GTCACCCCGAGCGTATTAGTTT-ACACC-TCGCCCAGGGCGTGCC-GCGG 'Staphylotrichum_coccosporum_NBRC31817' GTCACCCCGAGCGTAGTAGTTT-ACACC-TCGCCCAGGGCGTGCC-GCGG 'Chaetomium_globosum' GTCGCACCGAGCGTAGTAGCAT-ACATC-TCGCTCTGGTCGCGCC-GCGG 'Humicola_nigrescens' GTCACTCCGAGCGTAGTAAT---ACATC-TCGCTCAGGGCGTGCT-GCGG 'Humicola_grisea_var._grisea_FO-2942' GTCACTCCGAGCGTAGTAAT---ACATC-TCGCTCAGGGCGTGCT-GCGG 'Humicola_grisea_var._grisea_DAOM232586' GTCACTCCGAGCGTAGTAAT---ACATC-TCGCTCAGGGCGTGCT-GCGG 'Botryotrichum_piluliferum' GTCACACCGGGCGTAGTAGATT-TTATC-TCGCTCAGGGCGTGCT-GCGG 'Retroconis_fusiformis' GTCACCCCGAGCGTAGTAGTTTATCATC-TCGTTCTGGGCGTGCT-GCGG 'Humicola_fuscoatra' GTCACTCCGAGCGTAGTAGTT--ACATC-TCGCTCTGGGCGTGCT-GCGG 'Chaetomium_sphaerale' GTCACTCCGAGCGTAGTAGTT--ACATC-TCGCTCTGGGCGTGCT-GCGG 'Zopfiella_karachiensis' G-CAC-CGGCCGTAAAA-------------C-ACTCTTTCTAAGGTTGAC 'Zopfiella_erostrata' G-TTC-CGGCCGTGAAAC--CCC-------CTACTCTTTA--AGGTTGAC 'Humicola_grisea_var._thermoidea' G-TGC-TGGCCGTAAAGCGACCT-TTGCGTCTTTAGCACT--AGGTTGAC 'Humicola_insolens_MTCC4617' G-TGC-TGGCCGTAAAGCGACCCTTTGCGTCTTTAGCACT--AGGTTGAC 'Humicola_insolens_IMI126330' G-TGC-TGGCCGTAAAGCGACCT-TTGCGTCTTTAGCACT--AGGTTGAC 'Staphylotrichum_boninense_FKI-4859' G-TTCCCGGCCGTTAAAC--CCC-------CACCATCTAA--AGGTTGAC 'Staphylotrichum_boninense_FKI-4751' G-TTCCCGGCCGTTAAAC--CCC-------CACCATCTCA--AGGTTGAC 'Staphylotrichum_boninense_FKI-5336' G-TTCCCGGCCGTTAAAC--CCC-------CACCATCTCA--AGGTTGAC 'Staphylotrichum_coccosporum_FKI-5577' G-TTCCCGGACGTTAAAC--CCC-------CCATACCACAC-AGGTTGAC 'Staphylotrichum_coccosporum_NBRC33272' GTTTCCCGGCCGTTAAACC-CCC-------CCATACCACA--AGGTTGAC 'Staphylotrichum_cocosporum_CBS364.58' G-TTCCCGGCCGTTAAAC--CCC-------CCATACCACA--AGGTTGAC 'Staphylotrichum_coccosporum_NBRC31817' G-TTCCCGGCCGTTAAAC--CCC-------CCATACCACA--AGGTTGAC 'Chaetomium_globosum' G-TTC-CGGCCGTTAAACCACCT--------TTTAACCCA--AGGTTGAC 'Humicola_nigrescens' G-TTC-CGGCCGTTAAAAAGCCT-------TATTTACCCA--AGGTTGAC 'Humicola_grisea_var._grisea_FO-2942' G-TTC-CGGCCGTTAAAAAGCCT-------TATTTACCCA--AGGTTGAC 'Humicola_grisea_var._grisea_DAOM232586' G-TTC-CGGCCGTTAAAAAGCCT-------TATTTACCCA--AGGTTGAC 'Botryotrichum_piluliferum' G-TTC-CGGCCGTTAAAAAGCCT-------TTTTTACCCA--AGGTTGAC 'Retroconis_fusiformis' G-TTC-CGGCCGTTAAACCACCT-------TCATAACCCA--AGGTTGAC 'Humicola_fuscoatra' G-TTC-CGGCCGTTAAAAAGCCT-------TATTTACCCA--AGGTTGAC 'Chaetomium_sphaerale' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAAT-AGGCGG 'Zopfiella_karachiensis' CTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAAT-AAGCGG 'Zopfiella_erostrata' CTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAAT-AAGCGG 'Humicola_grisea_var._thermoidea' CTCGGATCAGGTAGGAGGACCCGCTGAACTTAAGCATATCAAT-AAGCGG 'Humicola_insolens_MTCC4617' CTCGGATCAGGTAGGAGGACCCGCTGAACTTAAGCATATCAATAAAGCGG 'Humicola_insolens_IMI126330' CTCGGATCAGGTAGGAGGACCCGCT------------------------- 'Staphylotrichum_boninense_FKI-4859' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAAT-AAGCCG 'Staphylotrichum_boninense_FKI-4751' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAAT-A----- 'Staphylotrichum_boninense_FKI-5336' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAAT-AA---- 'Staphylotrichum_coccosporum_FKI-5577' CTCGGATC-TCTAGGAAGACCCGCTGAACTTAAGCATATC---------- 'Staphylotrichum_coccosporum_NBRC33272' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAAT-AAGCGG 'Staphylotrichum_cocosporum_CBS364.58' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAAT-AAGCGG 'Staphylotrichum_coccosporum_NBRC31817' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAAT-AAGCGG 'Chaetomium_globosum' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAA-------- 'Humicola_nigrescens' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAAT-AAGAGG 'Humicola_grisea_var._grisea_FO-2942' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAAT-AAGCGG 'Humicola_grisea_var._grisea_DAOM232586' CTCGGATCAGGTAG------------------------------------ 'Botryotrichum_piluliferum' CTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAAT-AAGCGG 'Retroconis_fusiformis' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAAT-AAGCGG 'Humicola_fuscoatra' CTCGGATCAGGTAGGAAGACCCGCTGAACTTAAGCATATCAAT-AAGCGG 'Chaetomium_sphaerale' AGGA---------------------------------------------- 'Zopfiella_karachiensis' AGGA 'Zopfiella_erostrata' AGGA 'Humicola_grisea_var._thermoidea' AGGA 'Humicola_insolens_MTCC4617' AGGA 'Humicola_insolens_IMI126330' ---- 'Staphylotrichum_boninense_FKI-4859' ---- 'Staphylotrichum_boninense_FKI-4751' ---- 'Staphylotrichum_boninense_FKI-5336' ---- 'Staphylotrichum_coccosporum_FKI-5577' ---- 'Staphylotrichum_coccosporum_NBRC33272' AGGA 'Staphylotrichum_cocosporum_CBS364.58' AGGA 'Staphylotrichum_coccosporum_NBRC31817' AGGA 'Chaetomium_globosum' ---- 'Humicola_nigrescens' AGGA 'Humicola_grisea_var._grisea_FO-2942' AGGA 'Humicola_grisea_var._grisea_DAOM232586' ---- 'Botryotrichum_piluliferum' AGGA 'Retroconis_fusiformis' AGGA 'Humicola_fuscoatra' AGGA 'Chaetomium_sphaerale' ---- ; END; BEGIN TREES; Title 'Trees from "Staphylotrichum_Fig2.NX"'; LINK Taxa = Taxa; TRANSLATE 1 'Zopfiella_karachiensis', 2 'Zopfiella_erostrata', 3 'Humicola_grisea_var._thermoidea', 4 'Humicola_insolens_MTCC4617', 5 'Humicola_insolens_IMI126330', 6 'Staphylotrichum_boninense_FKI-4859', 7 'Staphylotrichum_boninense_FKI-4751', 8 'Staphylotrichum_boninense_FKI-5336', 9 'Staphylotrichum_coccosporum_FKI-5577', 10 'Staphylotrichum_coccosporum_NBRC33272', 11 'Staphylotrichum_cocosporum_CBS364.58', 12 'Staphylotrichum_coccosporum_NBRC31817', 13 'Chaetomium_globosum', 14 'Humicola_nigrescens', 15 'Humicola_grisea_var._grisea_FO-2942', 16 'Humicola_grisea_var._grisea_DAOM232586', 17 'Botryotrichum_piluliferum', 18 'Retroconis_fusiformis', 19 'Humicola_fuscoatra', 20 'Chaetomium_sphaerale'; TREE 'PAUP 1+' = (((((1,2),((3,5),4)),((6,(7,8)),(((9,12),11),10))),(13,(19,20))),((14,(15,16)),17),18)[% ] [%unrooted = on ]; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 604; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 604; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 604; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1315896843153; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4514799544874508537; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5478165826081526420; mqVersion 274; checksumv 0 2 1175988301 null getNumChars 604 numChars 604 getNumTaxa 20 numTaxa 20 short true bits 15 states 15 sumSquaresStatesOnly 217326.0 sumSquares 217326.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4514799544874508537 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1307.1313649192378.5041026774674250512; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((1,2),((4,(3,5)),(((6,(7,8)),(10,(11,(9,12)))),((13,(19,20)),(18,(17,(14,(15,16))))))))<> ;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;